Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
15:33:04 (3040177): wrapper (7.7.26015): starting
15:33:04 (3040177): wrapper: running run_atlas (--nthreads 9)
[2026-03-08 15:33:04] Arguments: --nthreads 9
[2026-03-08 15:33:04] Threads: 9
[2026-03-08 15:33:04] Checking for CVMFS
[2026-03-08 15:33:04] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-08 15:33:05] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-08 15:33:05] Running cvmfs_config stat atlas.cern.ch
[2026-03-08 15:33:06] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-08 15:33:06] 2.13.3.0 11959 177356 428716 157051 1 402 17659789 32935937 32488 16776704 0 694927186 99.522 924752794 33062 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2026-03-08 15:33:06] CVMFS is ok
[2026-03-08 15:33:06] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-08 15:33:06] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-08 15:33:06] Further information can be found at the LHC@home message board.
[2026-03-08 15:33:06] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-08 15:33:06] Checking for apptainer binary...
[2026-03-08 15:33:06] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-08 15:33:06] Running /usr/bin/apptainer --version
[2026-03-08 15:33:06] apptainer version 1.4.5-2.el9
[2026-03-08 15:33:06] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-08 15:33:06] c6-8-25-4.aglt2.org
[2026-03-08 15:33:06] apptainer works
[2026-03-08 15:33:06] Set ATHENA_PROC_NUMBER=9
[2026-03-08 15:33:06] Set ATHENA_CORE_NUMBER=9
[2026-03-08 15:33:06] Starting ATLAS job with PandaID=7045950399
[2026-03-08 15:33:06] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-08 21:38:39]  *** The last 200 lines of the pilot log: ***
[2026-03-08 21:38:39] 2026-03-09 01:37:52,558 | INFO     | log transfer has been attempted: DONE
[2026-03-08 21:38:39] 2026-03-09 01:37:52,559 | INFO     | job 7045950399 has finished - writing final server update
[2026-03-08 21:38:39] 2026-03-09 01:37:52,559 | INFO     | total number of processed events: 400 (read)
[2026-03-08 21:38:39] 2026-03-09 01:37:52,671 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-7045950399/memory_monitor_summary.json (trf name=prmon)
[2026-03-08 21:38:39] 2026-03-09 01:37:52,686 | INFO     | extracted standard info from prmon json
[2026-03-08 21:38:39] 2026-03-09 01:37:52,686 | INFO     | extracted standard memory fields from prmon json
[2026-03-08 21:38:39] 2026-03-09 01:37:52,686 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-03-08 21:38:39] 2026-03-09 01:37:52,687 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-03-08 21:38:39] 2026-03-09 01:37:52,687 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-03-08 21:38:39] 2026-03-09 01:37:52,713 | INFO     | fitting pss+swap vs Time
[2026-03-08 21:38:39] 2026-03-09 01:37:52,718 | INFO     | sum of square deviations: 14227196743.530678
[2026-03-08 21:38:39] 2026-03-09 01:37:52,721 | INFO     | sum of deviations: 43483515887.02797
[2026-03-08 21:38:39] 2026-03-09 01:37:52,721 | INFO     | mean x: 1773009342.8882682
[2026-03-08 21:38:39] 2026-03-09 01:37:52,721 | INFO     | mean y: 2578903.625698324
[2026-03-08 21:38:39] 2026-03-09 01:37:52,721 | INFO     | intersect: -5416386006.969783
[2026-03-08 21:38:39] 2026-03-09 01:37:52,740 | INFO     | chi2: 2.0729970898007606
[2026-03-08 21:38:39] 2026-03-09 01:37:52,741 | INFO     | sum of square deviations: 13639361305.830038
[2026-03-08 21:38:39] 2026-03-09 01:37:52,744 | INFO     | sum of deviations: 67224398615.61477
[2026-03-08 21:38:39] 2026-03-09 01:37:52,744 | INFO     | mean x: 1773009190.388102
[2026-03-08 21:38:39] 2026-03-09 01:37:52,744 | INFO     | mean y: 2584989.8130311617
[2026-03-08 21:38:39] 2026-03-09 01:37:52,744 | INFO     | intersect: -8736055617.416252
[2026-03-08 21:38:39] 2026-03-09 01:37:52,744 | INFO     | chi2: 1.2881253771148924
[2026-03-08 21:38:39] 2026-03-09 01:37:52,745 | INFO     | current chi2=1.2881253771148924 (change=37.861689075564676 %)
[2026-03-08 21:38:39] 2026-03-09 01:37:52,745 | INFO     | sum of square deviations: 13067901836.169493
[2026-03-08 21:38:39] 2026-03-09 01:37:52,754 | INFO     | sum of deviations: 65692248930.64079
[2026-03-08 21:38:39] 2026-03-09 01:37:52,754 | INFO     | mean x: 1773009037.8821838
[2026-03-08 21:38:39] 2026-03-09 01:37:52,754 | INFO     | mean y: 2584580.893678161
[2026-03-08 21:38:39] 2026-03-09 01:37:52,754 | INFO     | intersect: -8910319153.235786
[2026-03-08 21:38:39] 2026-03-09 01:37:52,755 | INFO     | chi2: 1.288355239787002
[2026-03-08 21:38:39] 2026-03-09 01:37:52,755 | INFO     | current chi2=1.288355239787002 (change=-0.01784474370223183 %)
[2026-03-08 21:38:39] 2026-03-09 01:37:52,755 | INFO     | right removable region: 347
[2026-03-08 21:38:39] 2026-03-09 01:37:52,755 | INFO     | sum of square deviations: 13639320070.26629
[2026-03-08 21:38:39] 2026-03-09 01:37:52,771 | INFO     | sum of deviations: -8405750086.048161
[2026-03-08 21:38:39] 2026-03-09 01:37:52,771 | INFO     | mean x: 1773009495.3937676
[2026-03-08 21:38:39] 2026-03-09 01:37:52,772 | INFO     | mean y: 2592281.705382436
[2026-03-08 21:38:39] 2026-03-09 01:37:52,772 | INFO     | intersect: 1095276861.4125435
[2026-03-08 21:38:39] 2026-03-09 01:37:52,772 | INFO     | chi2: 0.8417329728366343
[2026-03-08 21:38:39] 2026-03-09 01:37:52,772 | INFO     | current chi2=0.8417329728366343 (change=59.39536157682041 %)
[2026-03-08 21:38:39] 2026-03-09 01:37:52,790 | INFO     | sum of square deviations: 13067862309.479912
[2026-03-08 21:38:39] 2026-03-09 01:37:52,793 | INFO     | sum of deviations: -15259377181.29023
[2026-03-08 21:38:39] 2026-03-09 01:37:52,793 | INFO     | mean x: 1773009647.8994253
[2026-03-08 21:38:39] 2026-03-09 01:37:52,793 | INFO     | mean y: 2594095.0488505745
[2026-03-08 21:38:39] 2026-03-09 01:37:52,793 | INFO     | intersect: 2072942123.1067526
[2026-03-08 21:38:39] 2026-03-09 01:37:52,806 | INFO     | chi2: 0.8143818314518724
[2026-03-08 21:38:39] 2026-03-09 01:37:52,806 | INFO     | current chi2=0.8143818314518724 (change=3.249384575323069 %)
[2026-03-08 21:38:39] 2026-03-09 01:37:52,806 | INFO     | left removable region: 20
[2026-03-08 21:38:39] 2026-03-09 01:37:52,807 | INFO     | sum of square deviations: 10841910569.896051
[2026-03-08 21:38:39] 2026-03-09 01:37:52,809 | INFO     | sum of deviations: 11322938880.587158
[2026-03-08 21:38:39] 2026-03-09 01:37:52,809 | INFO     | mean x: 1773009617.3914373
[2026-03-08 21:38:39] 2026-03-09 01:37:52,810 | INFO     | mean y: 2599309.4954128442
[2026-03-08 21:38:39] 2026-03-09 01:37:52,810 | INFO     | intersect: -1849074286.499665
[2026-03-08 21:38:39] 2026-03-09 01:37:52,822 | INFO     | chi2: 0.016369893839008234
[2026-03-08 21:38:39] 2026-03-09 01:37:52,823 | INFO     | current memory leak: 1.04 B/s (using 327 data points, chi2=0.02)
[2026-03-08 21:38:39] 2026-03-09 01:37:52,823 | INFO     | could have reported an average CPU frequency of 2726 MHz (16 samples)
[2026-03-08 21:38:39] 2026-03-09 01:37:52,823 | INFO     | ..............................
[2026-03-08 21:38:39] 2026-03-09 01:37:52,823 | INFO     | . Timing measurements:
[2026-03-08 21:38:39] 2026-03-09 01:37:52,824 | INFO     | . get job = 0 s
[2026-03-08 21:38:39] 2026-03-09 01:37:52,824 | INFO     | . initial setup = 13 s
[2026-03-08 21:38:39] 2026-03-09 01:37:52,824 | INFO     | . payload setup = 11 s
[2026-03-08 21:38:39] 2026-03-09 01:37:52,824 | INFO     | . stage-in = 0 s
[2026-03-08 21:38:39] 2026-03-09 01:37:52,824 | INFO     | . payload execution = 21814 s
[2026-03-08 21:38:39] 2026-03-09 01:37:52,824 | INFO     | . stage-out = 3 s
[2026-03-08 21:38:39] 2026-03-09 01:37:52,824 | INFO     | . log creation = 0 s
[2026-03-08 21:38:39] 2026-03-09 01:37:52,824 | INFO     | ..............................
[2026-03-08 21:38:39] 2026-03-09 01:37:53,055 | INFO     | 
[2026-03-08 21:38:39] 2026-03-09 01:37:53,055 | INFO     | job summary report
[2026-03-08 21:38:39] 2026-03-09 01:37:53,055 | INFO     | --------------------------------------------------
[2026-03-08 21:38:39] 2026-03-09 01:37:53,055 | INFO     | PanDA job id: 7045950399
[2026-03-08 21:38:39] 2026-03-09 01:37:53,056 | INFO     | task id: 48998012
[2026-03-08 21:38:39] 2026-03-09 01:37:53,056 | INFO     | errors: (none)
[2026-03-08 21:38:39] 2026-03-09 01:37:53,056 | INFO     | status: LOG_TRANSFER = DONE 
[2026-03-08 21:38:39] 2026-03-09 01:37:53,056 | INFO     | pilot state: finished 
[2026-03-08 21:38:39] 2026-03-09 01:37:53,056 | INFO     | transexitcode: 0
[2026-03-08 21:38:39] 2026-03-09 01:37:53,056 | INFO     | exeerrorcode: 0
[2026-03-08 21:38:39] 2026-03-09 01:37:53,056 | INFO     | exeerrordiag: 
[2026-03-08 21:38:39] 2026-03-09 01:37:53,056 | INFO     | exitcode: 0
[2026-03-08 21:38:39] 2026-03-09 01:37:53,056 | INFO     | exitmsg: OK
[2026-03-08 21:38:39] 2026-03-09 01:37:53,056 | INFO     | cpuconsumptiontime: 58589 s
[2026-03-08 21:38:39] 2026-03-09 01:37:53,056 | INFO     | nevents: 400
[2026-03-08 21:38:39] 2026-03-09 01:37:53,056 | INFO     | neventsw: 0
[2026-03-08 21:38:39] 2026-03-09 01:37:53,056 | INFO     | pid: 3049265
[2026-03-08 21:38:39] 2026-03-09 01:37:53,057 | INFO     | pgrp: 3049265
[2026-03-08 21:38:39] 2026-03-09 01:37:53,057 | INFO     | corecount: 9
[2026-03-08 21:38:39] 2026-03-09 01:37:53,057 | INFO     | event service: False
[2026-03-08 21:38:39] 2026-03-09 01:37:53,057 | INFO     | sizes: {0: 2279830, 1: 2280291, 21830: 2313963, 21831: 2313962, 21836: 2323016, 21837: 2323072, 21839: 2323394}
[2026-03-08 21:38:39] 2026-03-09 01:37:53,057 | INFO     | --------------------------------------------------
[2026-03-08 21:38:39] 2026-03-09 01:37:53,057 | INFO     | 
[2026-03-08 21:38:39] 2026-03-09 01:37:53,057 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2026-03-08 21:38:39] 2026-03-09 01:37:53,110 | INFO     | queue jobs had 0 job(s) [purged]
[2026-03-08 21:38:39] 2026-03-09 01:37:53,110 | INFO     | queue payloads had 0 job(s) [purged]
[2026-03-08 21:38:39] 2026-03-09 01:37:53,111 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-08 21:38:39] 2026-03-09 01:37:53,111 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-08 21:38:39] 2026-03-09 01:37:53,111 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-08 21:38:39] 2026-03-09 01:37:53,111 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-08 21:38:39] 2026-03-09 01:37:53,111 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-08 21:38:39] 2026-03-09 01:37:53,111 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-08 21:38:39] 2026-03-09 01:37:53,111 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-08 21:38:39] 2026-03-09 01:37:53,111 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-08 21:38:39] 2026-03-09 01:37:53,111 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-08 21:38:39] 2026-03-09 01:37:53,111 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-08 21:38:39] 2026-03-09 01:37:53,111 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-08 21:38:39] 2026-03-09 01:37:53,111 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-08 21:38:39] 2026-03-09 01:37:53,112 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-08 21:38:39] 2026-03-09 01:37:53,112 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-08 21:38:39] 2026-03-09 01:37:53,112 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-08 21:38:39] 2026-03-09 01:37:53,112 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-08 21:38:39] 2026-03-09 01:37:53,112 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-08 21:38:39] 2026-03-09 01:37:53,112 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-08 21:38:39] 2026-03-09 01:37:53,112 | INFO     | job 7045950399 has completed (purged errors)
[2026-03-08 21:38:39] 2026-03-09 01:37:53,112 | INFO     | overall cleanup function is called
[2026-03-08 21:38:39] 2026-03-09 01:37:54,126 | INFO     | --- collectZombieJob: --- 10, [3049265]
[2026-03-08 21:38:39] 2026-03-09 01:37:54,129 | INFO     | zombie collector waiting for pid 3049265
[2026-03-08 21:38:39] 2026-03-09 01:37:54,129 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-08 21:38:39] 2026-03-09 01:37:54,129 | INFO     | collected zombie processes
[2026-03-08 21:38:39] 2026-03-09 01:37:54,129 | INFO     | will attempt to kill all subprocesses of pid=3049265
[2026-03-08 21:38:39] 2026-03-09 01:37:55,514 | INFO     | process IDs to be killed: [3049265] (in reverse order)
[2026-03-08 21:38:39] 2026-03-09 01:37:56,470 | WARNING  | found no corresponding commands to process id(s)
[2026-03-08 21:38:39] 2026-03-09 01:37:56,470 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-08 21:38:39] 2026-03-09 01:37:56,549 | INFO     | did not find any defunct processes belonging to 3049265
[2026-03-08 21:38:39] 2026-03-09 01:37:56,591 | INFO     | did not find any defunct processes belonging to 3049265
[2026-03-08 21:38:39] 2026-03-09 01:37:56,592 | INFO     | ready for new job
[2026-03-08 21:38:39] 2026-03-09 01:37:56,592 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-08 21:38:39] 2026-03-09 01:37:56,599 | INFO     | **************************************
[2026-03-08 21:38:39] 2026-03-09 01:37:56,599 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-03-08 21:38:39] 2026-03-09 01:37:56,599 | INFO     | **************************************
[2026-03-08 21:38:39] 2026-03-09 01:37:56,599 | INFO     | 
[2026-03-08 21:38:39] 2026-03-09 01:37:56,609 | INFO     | architecture information:
[2026-03-08 21:38:39] 2026-03-09 01:37:56,613 | INFO     | executing command: cat /etc/os-release
[2026-03-08 21:38:39] 2026-03-09 01:37:56,669 | INFO     | cat /etc/os-release:
[2026-03-08 21:38:39] NAME="CentOS Linux"
[2026-03-08 21:38:39] VERSION="7 (Core)"
[2026-03-08 21:38:39] ID="centos"
[2026-03-08 21:38:39] ID_LIKE="rhel fedora"
[2026-03-08 21:38:39] VERSION_ID="7"
[2026-03-08 21:38:39] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-08 21:38:39] ANSI_COLOR="0;31"
[2026-03-08 21:38:39] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-08 21:38:39] HOME_URL="https://www.centos.org/"
[2026-03-08 21:38:39] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-08 21:38:39] 
[2026-03-08 21:38:39] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-08 21:38:39] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-08 21:38:39] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-08 21:38:39] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-08 21:38:39] 
[2026-03-08 21:38:39] 2026-03-09 01:37:56,669 | INFO     | **************************************
[2026-03-08 21:38:39] 2026-03-09 01:37:57,173 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2026-03-08 21:38:39] 2026-03-09 01:37:57,306 | INFO     | sufficient remaining disk space (72967258112 B)
[2026-03-08 21:38:39] 2026-03-09 01:37:57,306 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-08 21:38:39] 2026-03-09 01:37:57,307 | INFO     | current server update state: UPDATING_FINAL
[2026-03-08 21:38:39] 2026-03-09 01:37:57,307 | INFO     | update_server=False
[2026-03-08 21:38:39] 2026-03-09 01:37:57,307 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-08 21:38:39] 2026-03-09 01:37:57,308 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-08 21:38:39] 2026-03-09 01:37:57,434 | INFO     | all data control threads have been joined
[2026-03-08 21:38:39] 2026-03-09 01:37:57,967 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-08 21:38:39] 2026-03-09 01:37:58,070 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-08 21:38:39] 2026-03-09 01:37:58,116 | INFO     | all payload control threads have been joined
[2026-03-08 21:38:39] 2026-03-09 01:37:58,154 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-08 21:38:39] 2026-03-09 01:37:58,154 | INFO     | aborting loop
[2026-03-08 21:38:39] 2026-03-09 01:37:58,313 | INFO     | [job] retrieve thread has finished
[2026-03-08 21:38:39] 2026-03-09 01:37:58,424 | INFO     | [payload] failed_post thread has finished
[2026-03-08 21:38:39] 2026-03-09 01:37:58,440 | INFO     | [data] control thread has finished
[2026-03-08 21:38:39] 2026-03-09 01:37:58,490 | INFO     | [data] copytool_in thread has finished
[2026-03-08 21:38:39] 2026-03-09 01:37:58,583 | INFO     | all job control threads have been joined
[2026-03-08 21:38:39] 2026-03-09 01:37:59,069 | INFO     | [payload] execute_payloads thread has finished
[2026-03-08 21:38:39] 2026-03-09 01:37:59,076 | INFO     | [job] queue monitor thread has finished
[2026-03-08 21:38:39] 2026-03-09 01:37:59,122 | INFO     | [payload] control thread has finished
[2026-03-08 21:38:39] 2026-03-09 01:37:59,145 | INFO     | [payload] validate_post thread has finished
[2026-03-08 21:38:39] 2026-03-09 01:37:59,160 | INFO     | [job] job monitor thread has finished
[2026-03-08 21:38:39] 2026-03-09 01:37:59,437 | INFO     | [job] validate thread has finished
[2026-03-08 21:38:39] 2026-03-09 01:37:59,579 | INFO     | [payload] validate_pre thread has finished
[2026-03-08 21:38:39] 2026-03-09 01:37:59,601 | INFO     | [job] create_data_payload thread has finished
[2026-03-08 21:38:39] 2026-03-09 01:37:59,601 | INFO     | [job] control thread has finished
[2026-03-08 21:38:39] 2026-03-09 01:37:59,975 | INFO     | [data] copytool_out thread has finished
[2026-03-08 21:38:39] 2026-03-09 01:38:01,317 | INFO     | [data] queue_monitor thread has finished
[2026-03-08 21:38:39] 2026-03-09 01:38:07,957 | INFO     | job.realtimelogging is not enabled
[2026-03-08 21:38:39] 2026-03-09 01:38:08,963 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-08 21:38:39] 2026-03-09 01:38:27,507 | INFO     | PID=3044069 has CPU usage=8.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-03-08 21:38:39] 2026-03-09 01:38:27,508 | INFO     | .. there are 38 such processes running
[2026-03-08 21:38:39] 2026-03-09 01:38:27,508 | INFO     | found 0 job(s) in 20 queues
[2026-03-08 21:38:39] 2026-03-09 01:38:27,509 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-08 21:38:39] 2026-03-09 01:38:27,509 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-08 21:38:39] 2026-03-09 01:38:31,438 | INFO     | [monitor] cgroup control has ended
[2026-03-08 21:38:39] 2026-03-09 01:38:32,663 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140354541401920)>', '<ExcThread(monitor, started 140353751475968)>']
[2026-03-08 21:38:39] 2026-03-09 01:38:33,545 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-08 21:38:39] 2026-03-09 01:38:33,545 | INFO     | [monitor] control thread has ended
[2026-03-08 21:38:39] 2026-03-09 01:38:37,689 | INFO     | all workflow threads have been joined
[2026-03-08 21:38:39] 2026-03-09 01:38:37,689 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-08 21:38:39] 2026-03-09 01:38:37,689 | INFO     | traces error code: 0
[2026-03-08 21:38:39] 2026-03-09 01:38:37,689 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-08 21:38:39] 2026-03-09 01:38:38,611 [wrapper] ==== pilot stdout END ====
[2026-03-08 21:38:39] 2026-03-09 01:38:38,631 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-08 21:38:39] 2026-03-09 01:38:38,665 [wrapper] pilotpid: 3044069
[2026-03-08 21:38:39] 2026-03-09 01:38:38,701 [wrapper] Pilot exit status: 0
[2026-03-08 21:38:39] 2026-03-09 01:38:38,850 [wrapper] pandaids: 7045950399
[2026-03-08 21:38:39] 2026-03-09 01:38:39,056 [wrapper] cleanup supervisor_pilot  245469 3044070
[2026-03-08 21:38:39] 2026-03-09 01:38:39,097 [wrapper] Test setup, not cleaning
[2026-03-08 21:38:39] 2026-03-09 01:38:39,116 [wrapper] apfmon messages muted
[2026-03-08 21:38:39] 2026-03-09 01:38:39,119 [wrapper] ==== wrapper stdout END ====
[2026-03-08 21:38:39] 2026-03-09 01:38:39,122 [wrapper] ==== wrapper stderr END ====
[2026-03-08 21:38:39]  *** Error codes and diagnostics ***
[2026-03-08 21:38:39]     "exeErrorCode": 0,
[2026-03-08 21:38:39]     "exeErrorDiag": "",
[2026-03-08 21:38:39]     "pilotErrorCode": 0,
[2026-03-08 21:38:39]     "pilotErrorDiag": "",
[2026-03-08 21:38:39]  *** Listing of results directory ***
[2026-03-08 21:38:39] total 600396
[2026-03-08 21:38:39] -rw-r--r--. 1 boincer umatlas    584627 Mar  8 05:02 pilot3.tar.gz
[2026-03-08 21:38:39] -rw-r--r--. 1 boincer umatlas      5111 Mar  8 05:05 queuedata.json
[2026-03-08 21:38:39] -rwx------. 1 boincer umatlas     36322 Mar  8 05:05 runpilot2-wrapper.sh
[2026-03-08 21:38:39] -rw-r--r--. 1 boincer umatlas       100 Mar  8 15:33 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-08 21:38:39] -rwxr-xr-x. 1 boincer umatlas      7986 Mar  8 15:33 run_atlas
[2026-03-08 21:38:39] -rw-r--r--. 1 boincer umatlas       105 Mar  8 15:33 job.xml
[2026-03-08 21:38:39] -rw-r--r--. 2 boincer umatlas 342067082 Mar  8 15:33 EVNT.48998009._000039.pool.root.1
[2026-03-08 21:38:39] -rw-r--r--. 2 boincer umatlas    597965 Mar  8 15:33 input.tar.gz
[2026-03-08 21:38:39] -rw-r--r--. 2 boincer umatlas     15845 Mar  8 15:33 start_atlas.sh
[2026-03-08 21:38:39] drwxrwx--x. 2 boincer umatlas      4096 Mar  8 15:33 shared
[2026-03-08 21:38:39] -rw-r--r--. 1 boincer umatlas         0 Mar  8 15:33 boinc_lockfile
[2026-03-08 21:38:39] -rw-r--r--. 1 boincer umatlas      2585 Mar  8 15:33 pandaJob.out
[2026-03-08 21:38:39] -rw-------. 1 boincer umatlas        57 Mar  8 15:33 setup.sh.local
[2026-03-08 21:38:39] -rw-------. 1 boincer umatlas    999108 Mar  8 15:33 agis_schedconf.cvmfs.json
[2026-03-08 21:38:39] -rw-------. 1 boincer umatlas       443 Mar  8 15:33 workernode_map.json
[2026-03-08 21:38:39] drwx------. 5 boincer umatlas      4096 Mar  8 15:33 pilot3
[2026-03-08 21:38:39] -rw-r--r--. 1 boincer umatlas      6876 Mar  8 21:36 init_data.xml
[2026-03-08 21:38:39] -rw-------. 1 boincer umatlas 262284789 Mar  8 21:36 HITS.48998012._000723.pool.root.1
[2026-03-08 21:38:39] -rw-r--r--. 1 boincer umatlas       530 Mar  8 21:36 boinc_task_state.xml
[2026-03-08 21:38:39] -rw-------. 1 boincer umatlas      1044 Mar  8 21:37 memory_monitor_summary.json
[2026-03-08 21:38:39] -rw-------. 1 boincer umatlas   1511578 Mar  8 21:37 agis_ddmendpoints.agis.ALL.json
[2026-03-08 21:38:39] -rw-------. 1 boincer umatlas    574379 Mar  8 21:37 log.48998012._000723.job.log.tgz.1
[2026-03-08 21:38:39] -rw-------. 1 boincer umatlas      6388 Mar  8 21:37 heartbeat.json
[2026-03-08 21:38:39] -rw-------. 1 boincer umatlas        95 Mar  8 21:38 pilot_heartbeat.json
[2026-03-08 21:38:39] -rw-r--r--. 1 boincer umatlas        28 Mar  8 21:38 wrapper_checkpoint.txt
[2026-03-08 21:38:39] -rw-r--r--. 1 boincer umatlas      8192 Mar  8 21:38 boinc_mmap_file
[2026-03-08 21:38:39] -rw-------. 1 boincer umatlas      4892 Mar  8 21:38 pilotlog.txt
[2026-03-08 21:38:39] -rw-------. 1 boincer umatlas   2688971 Mar  8 21:38 log.48998012._000723.job.log.1
[2026-03-08 21:38:39] -rw-------. 1 boincer umatlas       357 Mar  8 21:38 output.list
[2026-03-08 21:38:39] -rw-r--r--. 1 boincer umatlas       620 Mar  8 21:38 runtime_log
[2026-03-08 21:38:39] -rw-------. 1 boincer umatlas   3276800 Mar  8 21:38 result.tar.gz
[2026-03-08 21:38:39] -rw-r--r--. 1 boincer umatlas      9347 Mar  8 21:38 runtime_log.err
[2026-03-08 21:38:39] -rw-------. 1 boincer umatlas       657 Mar  8 21:38 qg8MDmyFPJ9nsSi4ap6QjLDmwznN0nGgGQJmIVkRDm8lYLDmv6Pz7m.diag
[2026-03-08 21:38:39] -rw-r--r--. 1 boincer umatlas     21118 Mar  8 21:38 stderr.txt
[2026-03-08 21:38:39] HITS file was successfully produced:
[2026-03-08 21:38:39] -rw-------. 1 boincer umatlas 262284789 Mar  8 21:36 shared/HITS.pool.root.1
[2026-03-08 21:38:39]  *** Contents of shared directory: ***
[2026-03-08 21:38:39] total 593996
[2026-03-08 21:38:39] -rw-r--r--. 2 boincer umatlas 342067082 Mar  8 15:33 ATLAS.root_0
[2026-03-08 21:38:39] -rw-r--r--. 2 boincer umatlas    597965 Mar  8 15:33 input.tar.gz
[2026-03-08 21:38:39] -rw-r--r--. 2 boincer umatlas     15845 Mar  8 15:33 start_atlas.sh
[2026-03-08 21:38:39] -rw-------. 1 boincer umatlas 262284789 Mar  8 21:36 HITS.pool.root.1
[2026-03-08 21:38:39] -rw-------. 1 boincer umatlas   3276800 Mar  8 21:38 result.tar.gz
21:38:41 (3040177): run_atlas exited; CPU time 59742.263255
21:38:41 (3040177): called boinc_finish(0)

</stderr_txt>
]]>

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