Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
11:04:39 (580073): wrapper (7.7.26015): starting
11:04:39 (580073): wrapper: running run_atlas (--nthreads 2)
[2026-03-09 11:04:39] Arguments: --nthreads 2
[2026-03-09 11:04:39] Threads: 2
[2026-03-09 11:04:39] Checking for CVMFS
[2026-03-09 11:04:39] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-09 11:04:40] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-09 11:04:40] Running cvmfs_config stat atlas.cern.ch
[2026-03-09 11:04:40] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-09 11:04:40] 2.9.2.0 3296841 16853 67256 157071 0 49 25723305 36864000 0 130560 0 4167597 99.972 621045 12085 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-03-09 11:04:40] CVMFS is ok
[2026-03-09 11:04:40] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-09 11:04:40] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-09 11:04:40] Further information can be found at the LHC@home message board.
[2026-03-09 11:04:40] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-09 11:04:40] Checking for apptainer binary...
[2026-03-09 11:04:40] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-09 11:04:40] Running /usr/bin/apptainer --version
[2026-03-09 11:04:40] apptainer version 1.4.1-1.1
[2026-03-09 11:04:40] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-09 11:04:40] thA354
[2026-03-09 11:04:40] apptainer works
[2026-03-09 11:04:40] Set ATHENA_PROC_NUMBER=2
[2026-03-09 11:04:40] Set ATHENA_CORE_NUMBER=2
[2026-03-09 11:04:40] Starting ATLAS job with PandaID=7039677794
[2026-03-09 11:04:40] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-09 13:02:18]  *** The last 200 lines of the pilot log: ***
[2026-03-09 13:02:18] 2026-03-09 12:01:37,192 | INFO     | extracted standard info from prmon json
[2026-03-09 13:02:18] 2026-03-09 12:01:37,192 | INFO     | extracted standard memory fields from prmon json
[2026-03-09 13:02:18] 2026-03-09 12:01:37,192 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-03-09 13:02:18] 2026-03-09 12:01:37,192 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-03-09 13:02:18] 2026-03-09 12:01:37,192 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-03-09 13:02:18] 2026-03-09 12:01:37,193 | INFO     | fitting pss+swap vs Time
[2026-03-09 13:02:18] 2026-03-09 12:01:37,193 | INFO     | sum of square deviations: 471562330.0
[2026-03-09 13:02:18] 2026-03-09 12:01:37,193 | INFO     | sum of deviations: 28570753.000001907
[2026-03-09 13:02:18] 2026-03-09 12:01:37,193 | INFO     | mean x: 1773054201.0
[2026-03-09 13:02:18] 2026-03-09 12:01:37,193 | INFO     | mean y: 2268662.295652174
[2026-03-09 13:02:18] 2026-03-09 12:01:37,193 | INFO     | intersect: -105156147.55374086
[2026-03-09 13:02:18] 2026-03-09 12:01:37,193 | INFO     | chi2: 2.3571821687999845
[2026-03-09 13:02:18] 2026-03-09 12:01:37,193 | INFO     | sum of square deviations: 412686807.5
[2026-03-09 13:02:18] 2026-03-09 12:01:37,194 | INFO     | sum of deviations: 7257037385.999997
[2026-03-09 13:02:18] 2026-03-09 12:01:37,194 | INFO     | mean x: 1773054048.5
[2026-03-09 13:02:18] 2026-03-09 12:01:37,194 | INFO     | mean y: 2286720.8545454545
[2026-03-09 13:02:18] 2026-03-09 12:01:37,194 | INFO     | intersect: -31176610407.72195
[2026-03-09 13:02:18] 2026-03-09 12:01:37,194 | INFO     | chi2: 1.5112372806596646
[2026-03-09 13:02:18] 2026-03-09 12:01:37,194 | INFO     | current chi2=1.5112372806596646 (change=35.88797248415388 %)
[2026-03-09 13:02:18] 2026-03-09 12:01:37,194 | INFO     | sum of square deviations: 358927660.0
[2026-03-09 13:02:18] 2026-03-09 12:01:37,194 | INFO     | sum of deviations: 7045229708.999998
[2026-03-09 13:02:18] 2026-03-09 12:01:37,194 | INFO     | mean x: 1773053896.0
[2026-03-09 13:02:18] 2026-03-09 12:01:37,194 | INFO     | mean y: 2286119.6380952382
[2026-03-09 13:02:18] 2026-03-09 12:01:37,194 | INFO     | intersect: -34800191860.90371
[2026-03-09 13:02:18] 2026-03-09 12:01:37,194 | INFO     | chi2: 1.5145530077782043
[2026-03-09 13:02:18] 2026-03-09 12:01:37,194 | INFO     | current chi2=1.5145530077782043 (change=-0.21940479903277957 %)
[2026-03-09 13:02:18] 2026-03-09 12:01:37,194 | INFO     | right removable region: 104
[2026-03-09 13:02:18] 2026-03-09 12:01:37,194 | INFO     | sum of square deviations: 412686807.5
[2026-03-09 13:02:18] 2026-03-09 12:01:37,195 | INFO     | sum of deviations: -12958355416.0
[2026-03-09 13:02:18] 2026-03-09 12:01:37,195 | INFO     | mean x: 1773054353.5
[2026-03-09 13:02:18] 2026-03-09 12:01:37,195 | INFO     | mean y: 2301319.654545455
[2026-03-09 13:02:18] 2026-03-09 12:01:37,195 | INFO     | intersect: 55676163597.25862
[2026-03-09 13:02:18] 2026-03-09 12:01:37,195 | INFO     | chi2: 0.9634808786277536
[2026-03-09 13:02:18] 2026-03-09 12:01:37,195 | INFO     | current chi2=0.9634808786277536 (change=59.12573532158309 %)
[2026-03-09 13:02:18] 2026-03-09 12:01:37,195 | INFO     | sum of square deviations: 358927660.0
[2026-03-09 13:02:18] 2026-03-09 12:01:37,195 | INFO     | sum of deviations: -8174003843.0
[2026-03-09 13:02:18] 2026-03-09 12:01:37,195 | INFO     | mean x: 1773054506.0
[2026-03-09 13:02:18] 2026-03-09 12:01:37,195 | INFO     | mean y: 2287816.6761904764
[2026-03-09 13:02:18] 2026-03-09 12:01:37,195 | INFO     | intersect: 40380770617.06129
[2026-03-09 13:02:18] 2026-03-09 12:01:37,195 | INFO     | chi2: 0.9116735841396912
[2026-03-09 13:02:18] 2026-03-09 12:01:37,195 | INFO     | current chi2=0.9116735841396912 (change=5.377096280504221 %)
[2026-03-09 13:02:18] 2026-03-09 12:01:37,195 | INFO     | left removable region: 20
[2026-03-09 13:02:18] 2026-03-09 12:01:37,195 | INFO     | sum of square deviations: 183761585.0
[2026-03-09 13:02:18] 2026-03-09 12:01:37,196 | INFO     | sum of deviations: -319161211.0
[2026-03-09 13:02:18] 2026-03-09 12:01:37,196 | INFO     | mean x: 1773054475.5
[2026-03-09 13:02:18] 2026-03-09 12:01:37,196 | INFO     | mean y: 2306558.904761905
[2026-03-09 13:02:18] 2026-03-09 12:01:37,196 | INFO     | intersect: 3081787036.663755
[2026-03-09 13:02:18] 2026-03-09 12:01:37,196 | INFO     | chi2: 0.001317616470704747
[2026-03-09 13:02:18] 2026-03-09 12:01:37,196 | INFO     | current memory leak: -1.74 B/s (using 84 data points, chi2=0.00)
[2026-03-09 13:02:18] 2026-03-09 12:01:37,196 | INFO     | could have reported an average CPU frequency of 4544 MHz (7 samples)
[2026-03-09 13:02:18] 2026-03-09 12:01:37,196 | INFO     | ..............................
[2026-03-09 13:02:18] 2026-03-09 12:01:37,196 | INFO     | . Timing measurements:
[2026-03-09 13:02:18] 2026-03-09 12:01:37,196 | INFO     | . get job = 0 s
[2026-03-09 13:02:18] 2026-03-09 12:01:37,196 | INFO     | . initial setup = 7 s
[2026-03-09 13:02:18] 2026-03-09 12:01:37,196 | INFO     | . payload setup = 7 s
[2026-03-09 13:02:18] 2026-03-09 12:01:37,196 | INFO     | . stage-in = 0 s
[2026-03-09 13:02:18] 2026-03-09 12:01:37,196 | INFO     | . payload execution = 6971 s
[2026-03-09 13:02:18] 2026-03-09 12:01:37,196 | INFO     | . stage-out = 0 s
[2026-03-09 13:02:18] 2026-03-09 12:01:37,196 | INFO     | . log creation = 0 s
[2026-03-09 13:02:18] 2026-03-09 12:01:37,196 | INFO     | ..............................
[2026-03-09 13:02:18] 2026-03-09 12:01:37,223 | INFO     | 
[2026-03-09 13:02:18] 2026-03-09 12:01:37,223 | INFO     | job summary report
[2026-03-09 13:02:18] 2026-03-09 12:01:37,223 | INFO     | --------------------------------------------------
[2026-03-09 13:02:18] 2026-03-09 12:01:37,223 | INFO     | PanDA job id: 7039677794
[2026-03-09 13:02:18] 2026-03-09 12:01:37,223 | INFO     | task id: 48955006
[2026-03-09 13:02:18] 2026-03-09 12:01:37,223 | INFO     | errors: (none)
[2026-03-09 13:02:18] 2026-03-09 12:01:37,223 | INFO     | status: LOG_TRANSFER = DONE 
[2026-03-09 13:02:18] 2026-03-09 12:01:37,223 | INFO     | pilot state: finished 
[2026-03-09 13:02:18] 2026-03-09 12:01:37,223 | INFO     | transexitcode: 0
[2026-03-09 13:02:18] 2026-03-09 12:01:37,223 | INFO     | exeerrorcode: 0
[2026-03-09 13:02:18] 2026-03-09 12:01:37,224 | INFO     | exeerrordiag: 
[2026-03-09 13:02:18] 2026-03-09 12:01:37,224 | INFO     | exitcode: 0
[2026-03-09 13:02:18] 2026-03-09 12:01:37,224 | INFO     | exitmsg: OK
[2026-03-09 13:02:18] 2026-03-09 12:01:37,224 | INFO     | cpuconsumptiontime: 13550 s
[2026-03-09 13:02:18] 2026-03-09 12:01:37,224 | INFO     | nevents: 400
[2026-03-09 13:02:18] 2026-03-09 12:01:37,224 | INFO     | neventsw: 0
[2026-03-09 13:02:18] 2026-03-09 12:01:37,224 | INFO     | pid: 588509
[2026-03-09 13:02:18] 2026-03-09 12:01:37,224 | INFO     | pgrp: 588509
[2026-03-09 13:02:18] 2026-03-09 12:01:37,224 | INFO     | corecount: 2
[2026-03-09 13:02:18] 2026-03-09 12:01:37,224 | INFO     | event service: False
[2026-03-09 13:02:18] 2026-03-09 12:01:37,224 | INFO     | sizes: {0: 2280231, 11: 2280231, 6982: 2307577, 6983: 2307576, 6984: 2316830}
[2026-03-09 13:02:18] 2026-03-09 12:01:37,224 | INFO     | --------------------------------------------------
[2026-03-09 13:02:18] 2026-03-09 12:01:37,224 | INFO     | 
[2026-03-09 13:02:18] 2026-03-09 12:01:37,224 | INFO     | executing command: ls -lF /local/data/boinc/slots/0
[2026-03-09 13:02:18] 2026-03-09 12:01:37,234 | INFO     | queue jobs had 0 job(s) [purged]
[2026-03-09 13:02:18] 2026-03-09 12:01:37,234 | INFO     | queue payloads had 0 job(s) [purged]
[2026-03-09 13:02:18] 2026-03-09 12:01:37,234 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-09 13:02:18] 2026-03-09 12:01:37,234 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-09 13:02:18] 2026-03-09 12:01:37,234 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-09 13:02:18] 2026-03-09 12:01:37,234 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-09 13:02:18] 2026-03-09 12:01:37,234 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-09 13:02:18] 2026-03-09 12:01:37,234 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-09 13:02:18] 2026-03-09 12:01:37,234 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-09 13:02:18] 2026-03-09 12:01:37,235 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-09 13:02:18] 2026-03-09 12:01:37,235 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-09 13:02:18] 2026-03-09 12:01:37,235 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-09 13:02:18] 2026-03-09 12:01:37,235 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-09 13:02:18] 2026-03-09 12:01:37,235 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-09 13:02:18] 2026-03-09 12:01:37,235 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-09 13:02:18] 2026-03-09 12:01:37,235 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-09 13:02:18] 2026-03-09 12:01:37,235 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-09 13:02:18] 2026-03-09 12:01:37,235 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-09 13:02:18] 2026-03-09 12:01:37,235 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-09 13:02:18] 2026-03-09 12:01:37,235 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-09 13:02:18] 2026-03-09 12:01:37,235 | INFO     | job 7039677794 has completed (purged errors)
[2026-03-09 13:02:18] 2026-03-09 12:01:37,235 | INFO     | overall cleanup function is called
[2026-03-09 13:02:18] 2026-03-09 12:01:38,240 | INFO     | --- collectZombieJob: --- 10, [588509]
[2026-03-09 13:02:18] 2026-03-09 12:01:38,240 | INFO     | zombie collector waiting for pid 588509
[2026-03-09 13:02:18] 2026-03-09 12:01:38,241 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-09 13:02:18] 2026-03-09 12:01:38,241 | INFO     | collected zombie processes
[2026-03-09 13:02:18] 2026-03-09 12:01:38,241 | INFO     | will attempt to kill all subprocesses of pid=588509
[2026-03-09 13:02:18] 2026-03-09 12:01:38,277 | INFO     | process IDs to be killed: [588509] (in reverse order)
[2026-03-09 13:02:18] 2026-03-09 12:01:38,300 | WARNING  | found no corresponding commands to process id(s)
[2026-03-09 13:02:18] 2026-03-09 12:01:38,300 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-09 13:02:18] 2026-03-09 12:01:38,301 | INFO     | did not find any defunct processes belonging to 588509
[2026-03-09 13:02:18] 2026-03-09 12:01:38,301 | INFO     | did not find any defunct processes belonging to 588509
[2026-03-09 13:02:18] 2026-03-09 12:01:38,301 | INFO     | ready for new job
[2026-03-09 13:02:18] 2026-03-09 12:01:38,301 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-09 13:02:18] 2026-03-09 12:01:38,302 | INFO     | **************************************
[2026-03-09 13:02:18] 2026-03-09 12:01:38,302 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-03-09 13:02:18] 2026-03-09 12:01:38,302 | INFO     | **************************************
[2026-03-09 13:02:18] 2026-03-09 12:01:38,302 | INFO     | 
[2026-03-09 13:02:18] 2026-03-09 12:01:38,302 | INFO     | architecture information:
[2026-03-09 13:02:18] 2026-03-09 12:01:38,302 | INFO     | executing command: cat /etc/os-release
[2026-03-09 13:02:18] 2026-03-09 12:01:38,311 | INFO     | cat /etc/os-release:
[2026-03-09 13:02:18] NAME="CentOS Linux"
[2026-03-09 13:02:18] VERSION="7 (Core)"
[2026-03-09 13:02:18] ID="centos"
[2026-03-09 13:02:18] ID_LIKE="rhel fedora"
[2026-03-09 13:02:18] VERSION_ID="7"
[2026-03-09 13:02:18] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-09 13:02:18] ANSI_COLOR="0;31"
[2026-03-09 13:02:18] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-09 13:02:18] HOME_URL="https://www.centos.org/"
[2026-03-09 13:02:18] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-09 13:02:18] 
[2026-03-09 13:02:18] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-09 13:02:18] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-09 13:02:18] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-09 13:02:18] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-09 13:02:18] 
[2026-03-09 13:02:18] 2026-03-09 12:01:38,311 | INFO     | **************************************
[2026-03-09 13:02:18] 2026-03-09 12:01:38,544 | WARNING  | process 588509 can no longer be monitored (due to stat problems) - aborting
[2026-03-09 13:02:18] 2026-03-09 12:01:38,569 | INFO     | using path: /local/data/boinc/slots/0/memory_monitor_summary.json (trf name=prmon)
[2026-03-09 13:02:18] 2026-03-09 12:01:38,599 | INFO     | number of running child processes to parent process 588509: 1
[2026-03-09 13:02:18] 2026-03-09 12:01:38,599 | INFO     | maximum number of monitored processes: 6
[2026-03-09 13:02:18] 2026-03-09 12:01:38,599 | INFO     | aborting job monitoring since job object (job id=7039677794) has expired
[2026-03-09 13:02:18] 2026-03-09 12:01:38,813 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-03-09 13:02:18] 2026-03-09 12:01:38,825 | INFO     | sufficient remaining disk space (495431188480 B)
[2026-03-09 13:02:18] 2026-03-09 12:01:38,825 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-09 13:02:18] 2026-03-09 12:01:38,825 | INFO     | current server update state: UPDATING_FINAL
[2026-03-09 13:02:18] 2026-03-09 12:01:38,825 | INFO     | update_server=False
[2026-03-09 13:02:18] 2026-03-09 12:01:38,825 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-09 13:02:18] 2026-03-09 12:01:38,825 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-09 13:02:18] 2026-03-09 12:01:38,825 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-09 13:02:18] 2026-03-09 12:01:38,826 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-09 13:02:18] 2026-03-09 12:01:38,826 | INFO     | will abort loop
[2026-03-09 13:02:18] 2026-03-09 12:01:38,898 | INFO     | all data control threads have been joined
[2026-03-09 13:02:18] 2026-03-09 12:01:38,955 | INFO     | all payload control threads have been joined
[2026-03-09 13:02:18] 2026-03-09 12:01:39,831 | INFO     | [job] retrieve thread has finished
[2026-03-09 13:02:18] 2026-03-09 12:01:39,832 | INFO     | [job] queue monitor thread has finished
[2026-03-09 13:02:18] 2026-03-09 12:01:39,832 | INFO     | [job] job monitor thread has finished
[2026-03-09 13:02:18] 2026-03-09 12:01:39,904 | INFO     | [data] control thread has finished
[2026-03-09 13:02:18] 2026-03-09 12:01:39,961 | INFO     | [payload] control thread has finished
[2026-03-09 13:02:18] 2026-03-09 12:01:40,018 | INFO     | all job control threads have been joined
[2026-03-09 13:02:18] 2026-03-09 12:01:40,169 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-09 13:02:18] 2026-03-09 12:01:40,551 | INFO     | [payload] validate_pre thread has finished
[2026-03-09 13:02:18] 2026-03-09 12:01:40,552 | INFO     | [job] validate thread has finished
[2026-03-09 13:02:18] 2026-03-09 12:01:40,656 | INFO     | [payload] failed_post thread has finished
[2026-03-09 13:02:18] 2026-03-09 12:01:40,699 | INFO     | [payload] execute_payloads thread has finished
[2026-03-09 13:02:18] 2026-03-09 12:01:40,714 | INFO     | [job] create_data_payload thread has finished
[2026-03-09 13:02:18] 2026-03-09 12:01:40,956 | INFO     | [data] copytool_in thread has finished
[2026-03-09 13:02:18] 2026-03-09 12:01:41,023 | INFO     | [job] control thread has finished
[2026-03-09 13:02:18] 2026-03-09 12:01:41,302 | INFO     | [payload] validate_post thread has finished
[2026-03-09 13:02:18] 2026-03-09 12:01:41,768 | INFO     | job.realtimelogging is not enabled
[2026-03-09 13:02:18] 2026-03-09 12:01:42,174 | INFO     | [data] copytool_out thread has finished
[2026-03-09 13:02:18] 2026-03-09 12:01:42,774 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-09 13:02:18] 2026-03-09 12:01:42,832 | INFO     | [data] queue_monitor thread has finished
[2026-03-09 13:02:18] 2026-03-09 12:02:08,514 | INFO     | PID=584095 has CPU usage=1.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-03-09 13:02:18] 2026-03-09 12:02:08,514 | INFO     | found 0 job(s) in 20 queues
[2026-03-09 13:02:18] 2026-03-09 12:02:08,514 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-09 13:02:18] 2026-03-09 12:02:08,514 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-09 13:02:18] 2026-03-09 12:02:12,402 | INFO     | [monitor] cgroup control has ended
[2026-03-09 13:02:18] 2026-03-09 12:02:13,457 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139903033526080)>', '<ExcThread(monitor, started 139902175930112)>']
[2026-03-09 13:02:18] 2026-03-09 12:02:13,541 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-09 13:02:18] 2026-03-09 12:02:13,542 | INFO     | [monitor] control thread has ended
[2026-03-09 13:02:18] 2026-03-09 12:02:18,477 | INFO     | all workflow threads have been joined
[2026-03-09 13:02:18] 2026-03-09 12:02:18,477 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-09 13:02:18] 2026-03-09 12:02:18,478 | INFO     | traces error code: 0
[2026-03-09 13:02:18] 2026-03-09 12:02:18,478 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-09 13:02:18] 2026-03-09 12:02:18,519 [wrapper] ==== pilot stdout END ====
[2026-03-09 13:02:18] 2026-03-09 12:02:18,522 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-09 13:02:18] 2026-03-09 12:02:18,524 [wrapper] pilotpid: 584095
[2026-03-09 13:02:18] 2026-03-09 12:02:18,526 [wrapper] Pilot exit status: 0
[2026-03-09 13:02:18] 2026-03-09 12:02:18,531 [wrapper] pandaids: 7039677794
[2026-03-09 13:02:18] 2026-03-09 12:02:18,543 [wrapper] cleanup supervisor_pilot  593612 584096
[2026-03-09 13:02:18] 2026-03-09 12:02:18,545 [wrapper] Test setup, not cleaning
[2026-03-09 13:02:18] 2026-03-09 12:02:18,547 [wrapper] apfmon messages muted
[2026-03-09 13:02:18] 2026-03-09 12:02:18,549 [wrapper] ==== wrapper stdout END ====
[2026-03-09 13:02:18] 2026-03-09 12:02:18,551 [wrapper] ==== wrapper stderr END ====
[2026-03-09 13:02:18]  *** Error codes and diagnostics ***
[2026-03-09 13:02:18]     "exeErrorCode": 0,
[2026-03-09 13:02:18]     "exeErrorDiag": "",
[2026-03-09 13:02:18]     "pilotErrorCode": 0,
[2026-03-09 13:02:18]     "pilotErrorDiag": "",
[2026-03-09 13:02:18]  *** Listing of results directory ***
[2026-03-09 13:02:18] total 619676
[2026-03-09 13:02:18] -rwx------ 1 boinc boinc     36322 Mar  8 10:48 runpilot2-wrapper.sh
[2026-03-09 13:02:18] -rw-r--r-- 1 boinc boinc      5111 Mar  8 10:49 queuedata.json
[2026-03-09 13:02:18] -rw-r--r-- 1 boinc boinc    584627 Mar  8 10:49 pilot3.tar.gz
[2026-03-09 13:02:18] -rw-r--r-- 1 boinc boinc       100 Mar  9 11:04 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-09 13:02:18] -rwxr-xr-x 1 boinc boinc      7986 Mar  9 11:04 run_atlas
[2026-03-09 13:02:18] -rw-r--r-- 1 boinc boinc       105 Mar  9 11:04 job.xml
[2026-03-09 13:02:18] -rw-r--r-- 2 boinc boinc 442162362 Mar  9 11:04 EVNT.46701403._000493.pool.root.1
[2026-03-09 13:02:18] -rw-r--r-- 2 boinc boinc    597951 Mar  9 11:04 input.tar.gz
[2026-03-09 13:02:18] -rw-r--r-- 2 boinc boinc     15845 Mar  9 11:04 start_atlas.sh
[2026-03-09 13:02:18] drwxrwx--x 2 boinc boinc      4096 Mar  9 11:04 shared
[2026-03-09 13:02:18] -rw-r--r-- 1 boinc boinc         0 Mar  9 11:04 boinc_setup_complete
[2026-03-09 13:02:18] -rw-r--r-- 1 boinc boinc      6205 Mar  9 11:04 init_data.xml
[2026-03-09 13:02:18] -rw-r--r-- 1 boinc boinc         0 Mar  9 11:04 boinc_lockfile
[2026-03-09 13:02:18] -rw-r--r-- 1 boinc boinc      2563 Mar  9 11:04 pandaJob.out
[2026-03-09 13:02:18] -rw------- 1 boinc boinc    987066 Mar  9 11:04 agis_schedconf.cvmfs.json
[2026-03-09 13:02:18] -rw------- 1 boinc boinc   1511578 Mar  9 11:04 agis_ddmendpoints.agis.ALL.json
[2026-03-09 13:02:18] -rw------- 1 boinc boinc       419 Mar  9 11:05 workernode_map.json
[2026-03-09 13:02:18] drwx------ 5 boinc boinc      4096 Mar  9 11:05 pilot3
[2026-03-09 13:02:18] -rw------- 1 boinc boinc 185903737 Mar  9 13:01 HITS.48955006._024640.pool.root.1
[2026-03-09 13:02:18] -rw------- 1 boinc boinc        95 Mar  9 13:01 pilot_heartbeat.json
[2026-03-09 13:02:18] -rw-r--r-- 1 boinc boinc       530 Mar  9 13:01 boinc_task_state.xml
[2026-03-09 13:02:18] -rw------- 1 boinc boinc      1014 Mar  9 13:01 memory_monitor_summary.json
[2026-03-09 13:02:18] -rw------- 1 boinc boinc    280721 Mar  9 13:01 log.48955006._024640.job.log.tgz.1
[2026-03-09 13:02:18] -rw------- 1 boinc boinc      6291 Mar  9 13:01 heartbeat.json
[2026-03-09 13:02:18] -rw-r--r-- 1 boinc boinc      8192 Mar  9 13:02 boinc_mmap_file
[2026-03-09 13:02:18] -rw-r--r-- 1 boinc boinc        27 Mar  9 13:02 wrapper_checkpoint.txt
[2026-03-09 13:02:18] -rw------- 1 boinc boinc      5341 Mar  9 13:02 pilotlog.txt
[2026-03-09 13:02:18] -rw------- 1 boinc boinc   1004980 Mar  9 13:02 log.48955006._024640.job.log.1
[2026-03-09 13:02:18] -rw------- 1 boinc boinc       357 Mar  9 13:02 output.list
[2026-03-09 13:02:18] -rw-r--r-- 1 boinc boinc       620 Mar  9 13:02 runtime_log
[2026-03-09 13:02:18] -rw------- 1 boinc boinc   1300480 Mar  9 13:02 result.tar.gz
[2026-03-09 13:02:18] -rw-r--r-- 1 boinc boinc      8896 Mar  9 13:02 runtime_log.err
[2026-03-09 13:02:18] -rw------- 1 boinc boinc       657 Mar  9 13:02 6dgLDmuvPJ9n9Rq4apOajLDm4fhM0noT9bVooX4SDmGQWLDmyhmh6m.diag
[2026-03-09 13:02:18] -rw-r--r-- 1 boinc boinc     21005 Mar  9 13:02 stderr.txt
[2026-03-09 13:02:18] HITS file was successfully produced:
[2026-03-09 13:02:18] -rw------- 1 boinc boinc 185903737 Mar  9 13:01 shared/HITS.pool.root.1
[2026-03-09 13:02:18]  *** Contents of shared directory: ***
[2026-03-09 13:02:18] total 615224
[2026-03-09 13:02:18] -rw-r--r-- 2 boinc boinc 442162362 Mar  9 11:04 ATLAS.root_0
[2026-03-09 13:02:18] -rw-r--r-- 2 boinc boinc    597951 Mar  9 11:04 input.tar.gz
[2026-03-09 13:02:18] -rw-r--r-- 2 boinc boinc     15845 Mar  9 11:04 start_atlas.sh
[2026-03-09 13:02:18] -rw------- 1 boinc boinc 185903737 Mar  9 13:01 HITS.pool.root.1
[2026-03-09 13:02:18] -rw------- 1 boinc boinc   1300480 Mar  9 13:02 result.tar.gz
13:02:19 (580073): run_atlas exited; CPU time 13585.122143
13:02:19 (580073): called boinc_finish(0)

</stderr_txt>
]]>

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