Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
04:03:40 (979745): wrapper (7.7.26015): starting
04:03:40 (979745): wrapper: running run_atlas (--nthreads 3)
[2026-03-09 04:03:40] Arguments: --nthreads 3
[2026-03-09 04:03:40] Threads: 3
[2026-03-09 04:03:40] Checking for CVMFS
[2026-03-09 04:03:40] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-09 04:03:40] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-09 04:03:40] Running cvmfs_config stat atlas.cern.ch
[2026-03-09 04:03:41] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-09 04:03:41] 2.9.2.0 2854294 16490 89572 157061 2 50 28620420 36864000 0 130560 0 6479499 99.982 627503 14452 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-03-09 04:03:41] CVMFS is ok
[2026-03-09 04:03:41] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-09 04:03:41] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-09 04:03:41] Further information can be found at the LHC@home message board.
[2026-03-09 04:03:41] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-09 04:03:41] Checking for apptainer binary...
[2026-03-09 04:03:41] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-09 04:03:41] Running /usr/bin/apptainer --version
[2026-03-09 04:03:41] apptainer version 1.4.1-1.1
[2026-03-09 04:03:41] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-09 04:03:41] atlasA223b
[2026-03-09 04:03:41] apptainer works
[2026-03-09 04:03:41] Set ATHENA_PROC_NUMBER=3
[2026-03-09 04:03:41] Set ATHENA_CORE_NUMBER=3
[2026-03-09 04:03:41] Starting ATLAS job with PandaID=7032974277
[2026-03-09 04:03:41] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-09 05:32:25]  *** The last 200 lines of the pilot log: ***
[2026-03-09 05:32:25] 2026-03-09 04:31:53,478 | INFO     | job 7032974277 has completed (purged errors)
[2026-03-09 05:32:25] 2026-03-09 04:31:53,478 | INFO     | overall cleanup function is called
[2026-03-09 05:32:25] 2026-03-09 04:31:54,485 | INFO     | --- collectZombieJob: --- 10, [988227]
[2026-03-09 05:32:25] 2026-03-09 04:31:54,485 | INFO     | zombie collector waiting for pid 988227
[2026-03-09 05:32:25] 2026-03-09 04:31:54,485 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-09 05:32:25] 2026-03-09 04:31:54,485 | INFO     | collected zombie processes
[2026-03-09 05:32:25] 2026-03-09 04:31:54,485 | INFO     | will attempt to kill all subprocesses of pid=988227
[2026-03-09 05:32:25] 2026-03-09 04:31:54,527 | INFO     | process IDs to be killed: [988227] (in reverse order)
[2026-03-09 05:32:25] 2026-03-09 04:31:54,553 | WARNING  | found no corresponding commands to process id(s)
[2026-03-09 05:32:25] 2026-03-09 04:31:54,553 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-09 05:32:25] 2026-03-09 04:31:54,554 | INFO     | did not find any defunct processes belonging to 988227
[2026-03-09 05:32:25] 2026-03-09 04:31:54,555 | INFO     | did not find any defunct processes belonging to 988227
[2026-03-09 05:32:25] 2026-03-09 04:31:54,555 | INFO     | ready for new job
[2026-03-09 05:32:25] 2026-03-09 04:31:54,555 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-09 05:32:25] 2026-03-09 04:31:54,556 | INFO     | **************************************
[2026-03-09 05:32:25] 2026-03-09 04:31:54,556 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-03-09 05:32:25] 2026-03-09 04:31:54,556 | INFO     | **************************************
[2026-03-09 05:32:25] 2026-03-09 04:31:54,556 | INFO     | 
[2026-03-09 05:32:25] 2026-03-09 04:31:54,556 | INFO     | architecture information:
[2026-03-09 05:32:25] 2026-03-09 04:31:54,556 | INFO     | executing command: cat /etc/os-release
[2026-03-09 05:32:25] 2026-03-09 04:31:54,566 | INFO     | cat /etc/os-release:
[2026-03-09 05:32:25] NAME="CentOS Linux"
[2026-03-09 05:32:25] VERSION="7 (Core)"
[2026-03-09 05:32:25] ID="centos"
[2026-03-09 05:32:25] ID_LIKE="rhel fedora"
[2026-03-09 05:32:25] VERSION_ID="7"
[2026-03-09 05:32:25] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-09 05:32:25] ANSI_COLOR="0;31"
[2026-03-09 05:32:25] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-09 05:32:25] HOME_URL="https://www.centos.org/"
[2026-03-09 05:32:25] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-09 05:32:25] 
[2026-03-09 05:32:25] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-09 05:32:25] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-09 05:32:25] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-09 05:32:25] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-09 05:32:25] 
[2026-03-09 05:32:25] 2026-03-09 04:31:54,566 | INFO     | **************************************
[2026-03-09 05:32:25] 2026-03-09 04:31:55,069 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-03-09 05:32:25] 2026-03-09 04:31:55,082 | INFO     | sufficient remaining disk space (375158472704 B)
[2026-03-09 05:32:25] 2026-03-09 04:31:55,082 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-09 05:32:25] 2026-03-09 04:31:55,082 | INFO     | current server update state: UPDATING_FINAL
[2026-03-09 05:32:25] 2026-03-09 04:31:55,082 | INFO     | update_server=False
[2026-03-09 05:32:25] 2026-03-09 04:31:55,082 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-09 05:32:25] 2026-03-09 04:31:55,083 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-09 05:32:25] 2026-03-09 04:31:55,083 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-09 05:32:25] 2026-03-09 04:31:55,083 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-09 05:32:25] 2026-03-09 04:31:55,083 | INFO     | aborting loop
[2026-03-09 05:32:25] 2026-03-09 04:31:55,823 | INFO     | all data control threads have been joined
[2026-03-09 05:32:25] 2026-03-09 04:31:55,886 | INFO     | all payload control threads have been joined
[2026-03-09 05:32:25] 2026-03-09 04:31:56,088 | INFO     | [job] queue monitor thread has finished
[2026-03-09 05:32:25] 2026-03-09 04:31:56,089 | INFO     | [job] retrieve thread has finished
[2026-03-09 05:32:25] 2026-03-09 04:31:56,089 | INFO     | [job] job monitor thread has finished
[2026-03-09 05:32:25] 2026-03-09 04:31:56,311 | INFO     | [payload] execute_payloads thread has finished
[2026-03-09 05:32:25] 2026-03-09 04:31:56,626 | INFO     | all job control threads have been joined
[2026-03-09 05:32:25] 2026-03-09 04:31:56,642 | INFO     | [job] validate thread has finished
[2026-03-09 05:32:25] 2026-03-09 04:31:56,730 | INFO     | [job] create_data_payload thread has finished
[2026-03-09 05:32:25] 2026-03-09 04:31:56,765 | INFO     | [payload] validate_pre thread has finished
[2026-03-09 05:32:25] 2026-03-09 04:31:56,829 | INFO     | [data] control thread has finished
[2026-03-09 05:32:25] 2026-03-09 04:31:56,834 | INFO     | [payload] failed_post thread has finished
[2026-03-09 05:32:25] 2026-03-09 04:31:56,859 | INFO     | [data] copytool_in thread has finished
[2026-03-09 05:32:25] 2026-03-09 04:31:56,892 | INFO     | [payload] control thread has finished
[2026-03-09 05:32:25] 2026-03-09 04:31:57,089 | INFO     | [data] copytool_out thread has finished
[2026-03-09 05:32:25] 2026-03-09 04:31:57,368 | INFO     | [payload] validate_post thread has finished
[2026-03-09 05:32:25] 2026-03-09 04:31:57,459 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-09 05:32:25] 2026-03-09 04:31:57,631 | INFO     | [job] control thread has finished
[2026-03-09 05:32:25] 2026-03-09 04:31:57,876 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-09 05:32:25] 2026-03-09 04:31:58,926 | INFO     | [monitor] cgroup control has ended
[2026-03-09 05:32:25] 2026-03-09 04:32:01,883 | INFO     | [data] queue_monitor thread has finished
[2026-03-09 05:32:25] 2026-03-09 04:32:02,043 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139839337932608)>', '<ExcThread(monitor, started 139838984525568)>']
[2026-03-09 05:32:25] 2026-03-09 04:32:07,068 | INFO     | all workflow threads have been joined
[2026-03-09 05:32:25] 2026-03-09 04:32:07,069 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-09 05:32:25] 2026-03-09 04:32:07,069 | INFO     | traces error code: 0
[2026-03-09 05:32:25] 2026-03-09 04:32:07,069 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-09 05:32:25] 2026-03-09 04:32:24,921 | INFO     | PID=983790 has CPU usage=1.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-03-09 05:32:25] 2026-03-09 04:32:24,922 | INFO     | found 0 job(s) in 20 queues
[2026-03-09 05:32:25] 2026-03-09 04:32:24,922 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-09 05:32:25] 2026-03-09 04:32:24,922 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-09 05:32:25] 2026-03-09 04:32:24,922 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-09 05:32:25] 2026-03-09 04:32:24,922 | INFO     | [monitor] control thread has ended
[2026-03-09 05:32:25] 2026-03-09 04:32:24,969 [wrapper] ==== pilot stdout END ====
[2026-03-09 05:32:25] 2026-03-09 04:32:24,971 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-09 05:32:25] 2026-03-09 04:32:24,974 [wrapper] pilotpid: 983790
[2026-03-09 05:32:25] 2026-03-09 04:32:24,977 [wrapper] Pilot exit status: 0
[2026-03-09 05:32:25] 2026-03-09 04:32:24,984 [wrapper] pandaids: 7032974277
[2026-03-09 05:32:25] 2026-03-09 04:32:25,001 [wrapper] cleanup supervisor_pilot  993632 983791
[2026-03-09 05:32:25] 2026-03-09 04:32:25,004 [wrapper] Test setup, not cleaning
[2026-03-09 05:32:25] 2026-03-09 04:32:25,006 [wrapper] apfmon messages muted
[2026-03-09 05:32:25] 2026-03-09 04:32:25,009 [wrapper] ==== wrapper stdout END ====
[2026-03-09 05:32:25] 2026-03-09 04:32:25,011 [wrapper] ==== wrapper stderr END ====
[2026-03-09 05:32:25]  *** Error codes and diagnostics ***
[2026-03-09 05:32:25]     "exeErrorCode": 0,
[2026-03-09 05:32:25]     "exeErrorDiag": "",
[2026-03-09 05:32:25]     "pilotErrorCode": 0,
[2026-03-09 05:32:25]     "pilotErrorDiag": "",
[2026-03-09 05:32:25]  *** Listing of results directory ***
[2026-03-09 05:32:25] total 405760
[2026-03-09 05:32:25] -rw-r--r-- 1 boinc boinc    584627 Feb 28 11:26 pilot3.tar.gz
[2026-03-09 05:32:25] -rwx------ 1 boinc boinc     36322 Feb 28 11:27 runpilot2-wrapper.sh
[2026-03-09 05:32:25] -rw-r--r-- 1 boinc boinc      5111 Feb 28 11:28 queuedata.json
[2026-03-09 05:32:25] -rw-r--r-- 1 boinc boinc       100 Mar  9 04:03 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-09 05:32:25] -rwxr-xr-x 1 boinc boinc      7986 Mar  9 04:03 run_atlas
[2026-03-09 05:32:25] -rw-r--r-- 1 boinc boinc       105 Mar  9 04:03 job.xml
[2026-03-09 05:32:25] -rw-r--r-- 2 boinc boinc 241952742 Mar  9 04:03 EVNT.48451814._000002.pool.root.1
[2026-03-09 05:32:25] -rw-r--r-- 2 boinc boinc    597992 Mar  9 04:03 input.tar.gz
[2026-03-09 05:32:25] -rw-r--r-- 2 boinc boinc     15845 Mar  9 04:03 start_atlas.sh
[2026-03-09 05:32:25] drwxrwx--x 2 boinc boinc      4096 Mar  9 04:03 shared
[2026-03-09 05:32:25] -rw-r--r-- 1 boinc boinc         0 Mar  9 04:03 boinc_setup_complete
[2026-03-09 05:32:25] -rw-r--r-- 1 boinc boinc      6449 Mar  9 04:03 init_data.xml
[2026-03-09 05:32:25] -rw-r--r-- 1 boinc boinc         0 Mar  9 04:03 boinc_lockfile
[2026-03-09 05:32:25] -rw-r--r-- 1 boinc boinc      2676 Mar  9 04:03 pandaJob.out
[2026-03-09 05:32:25] -rw------- 1 boinc boinc    999108 Mar  9 04:03 agis_schedconf.cvmfs.json
[2026-03-09 05:32:25] -rw------- 1 boinc boinc   1511578 Mar  9 04:03 agis_ddmendpoints.agis.ALL.json
[2026-03-09 05:32:25] -rw------- 1 boinc boinc       426 Mar  9 04:03 workernode_map.json
[2026-03-09 05:32:25] drwx------ 5 boinc boinc      4096 Mar  9 04:03 pilot3
[2026-03-09 05:32:25] -rw------- 1 boinc boinc 167586086 Mar  9 05:31 HITS.48843795._000036.pool.root.1
[2026-03-09 05:32:25] -rw-r--r-- 1 boinc boinc       529 Mar  9 05:31 boinc_task_state.xml
[2026-03-09 05:32:25] -rw------- 1 boinc boinc      1014 Mar  9 05:31 memory_monitor_summary.json
[2026-03-09 05:32:25] -rw------- 1 boinc boinc    253124 Mar  9 05:31 log.48843795._000036.job.log.tgz.1
[2026-03-09 05:32:25] -rw------- 1 boinc boinc      6289 Mar  9 05:31 heartbeat.json
[2026-03-09 05:32:25] -rw-r--r-- 1 boinc boinc        27 Mar  9 05:32 wrapper_checkpoint.txt
[2026-03-09 05:32:25] -rw-r--r-- 1 boinc boinc      8192 Mar  9 05:32 boinc_mmap_file
[2026-03-09 05:32:25] -rw------- 1 boinc boinc       746 Mar  9 05:32 pilotlog.txt
[2026-03-09 05:32:25] -rw------- 1 boinc boinc        95 Mar  9 05:32 pilot_heartbeat.json
[2026-03-09 05:32:25] -rw------- 1 boinc boinc    769900 Mar  9 05:32 log.48843795._000036.job.log.1
[2026-03-09 05:32:25] -rw------- 1 boinc boinc       357 Mar  9 05:32 output.list
[2026-03-09 05:32:25] -rw-r--r-- 1 boinc boinc       620 Mar  9 05:32 runtime_log
[2026-03-09 05:32:25] -rw------- 1 boinc boinc   1044480 Mar  9 05:32 result.tar.gz
[2026-03-09 05:32:25] -rw-r--r-- 1 boinc boinc      8916 Mar  9 05:32 runtime_log.err
[2026-03-09 05:32:25] -rw------- 1 boinc boinc       661 Mar  9 05:32 SdRLDmfiWG9n9Rq4apOajLDm4fhM0noT9bVooX4SDm0A5KDm5ZL6nn.diag
[2026-03-09 05:32:25] -rw-r--r-- 1 boinc boinc     10804 Mar  9 05:32 stderr.txt
[2026-03-09 05:32:25] HITS file was successfully produced:
[2026-03-09 05:32:25] -rw------- 1 boinc boinc 167586086 Mar  9 05:31 shared/HITS.pool.root.1
[2026-03-09 05:32:25]  *** Contents of shared directory: ***
[2026-03-09 05:32:25] total 401572
[2026-03-09 05:32:25] -rw-r--r-- 2 boinc boinc 241952742 Mar  9 04:03 ATLAS.root_0
[2026-03-09 05:32:25] -rw-r--r-- 2 boinc boinc    597992 Mar  9 04:03 input.tar.gz
[2026-03-09 05:32:25] -rw-r--r-- 2 boinc boinc     15845 Mar  9 04:03 start_atlas.sh
[2026-03-09 05:32:25] -rw------- 1 boinc boinc 167586086 Mar  9 05:31 HITS.pool.root.1
[2026-03-09 05:32:25] -rw------- 1 boinc boinc   1044480 Mar  9 05:32 result.tar.gz
05:32:26 (979745): run_atlas exited; CPU time 14993.525688
05:32:26 (979745): called boinc_finish(0)

</stderr_txt>
]]>

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