Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
10:43:58 (3404361): wrapper (7.7.26015): starting
10:43:58 (3404361): wrapper: running run_atlas (--nthreads 4)
[2026-03-09 10:43:58] Arguments: --nthreads 4
[2026-03-09 10:43:58] Threads: 4
[2026-03-09 10:43:58] Checking for CVMFS
[2026-03-09 10:43:58] No cvmfs_config command found, will try listing directly
[2026-03-09 10:43:58] CVMFS is ok
[2026-03-09 10:43:58] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-09 10:43:58] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-09 10:43:58] Further information can be found at the LHC@home message board.
[2026-03-09 10:43:58] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-09 10:43:58] Checking for apptainer binary...
[2026-03-09 10:43:58] which: no apptainer in ((null))
[2026-03-09 10:43:58] apptainer is not installed, using version from CVMFS
[2026-03-09 10:43:58] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-09 10:43:58] WARNING: Environment variable TMPDIR already has value [/var/lib/boinc/var/slot216/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut24.grid.cesnet.cz
[2026-03-09 10:43:58] apptainer works
[2026-03-09 10:43:58] Set ATHENA_PROC_NUMBER=4
[2026-03-09 10:43:58] Set ATHENA_CORE_NUMBER=4
[2026-03-09 10:43:58] Starting ATLAS job with PandaID=7045950417
[2026-03-09 10:43:58] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc/var/slot216/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-09 12:45:59]  *** The last 200 lines of the pilot log: ***
[2026-03-09 12:45:59] 2026-03-09 11:45:01,307 | INFO     | mean y: 2325687.533898305
[2026-03-09 12:45:59] 2026-03-09 11:45:01,307 | INFO     | intersect: -46463354873.05677
[2026-03-09 12:45:59] 2026-03-09 11:45:01,307 | INFO     | chi2: 1.1162489001115055
[2026-03-09 12:45:59] 2026-03-09 11:45:01,307 | INFO     | sum of square deviations: 447383272.0
[2026-03-09 12:45:59] 2026-03-09 11:45:01,307 | INFO     | sum of deviations: 12673083121.0
[2026-03-09 12:45:59] 2026-03-09 11:45:01,307 | INFO     | mean x: 1773052938.0
[2026-03-09 12:45:59] 2026-03-09 11:45:01,307 | INFO     | mean y: 2324021.3628318585
[2026-03-09 12:45:59] 2026-03-09 11:45:01,307 | INFO     | intersect: -50223173147.44338
[2026-03-09 12:45:59] 2026-03-09 11:45:01,307 | INFO     | chi2: 1.1176174470625408
[2026-03-09 12:45:59] 2026-03-09 11:45:01,307 | INFO     | current chi2=1.1176174470625408 (change=-0.12260231126755684 %)
[2026-03-09 12:45:59] 2026-03-09 11:45:01,307 | INFO     | right removable region: 112
[2026-03-09 12:45:59] 2026-03-09 11:45:01,307 | INFO     | sum of square deviations: 447383272.0
[2026-03-09 12:45:59] 2026-03-09 11:45:01,308 | INFO     | sum of deviations: 1159158477.9999998
[2026-03-09 12:45:59] 2026-03-09 11:45:01,308 | INFO     | mean x: 1773053243.0
[2026-03-09 12:45:59] 2026-03-09 11:45:01,308 | INFO     | mean y: 2354914.5221238937
[2026-03-09 12:45:59] 2026-03-09 11:45:01,308 | INFO     | intersect: -4591580145.63552
[2026-03-09 12:45:59] 2026-03-09 11:45:01,308 | INFO     | chi2: 0.0007240853790814455
[2026-03-09 12:45:59] 2026-03-09 11:45:01,308 | INFO     | current chi2=0.0007240853790814455 (change=99.93513226494474 %)
[2026-03-09 12:45:59] 2026-03-09 11:45:01,308 | INFO     | sum of square deviations: 390582207.0
[2026-03-09 12:45:59] 2026-03-09 11:45:01,308 | INFO     | sum of deviations: 722608013.0
[2026-03-09 12:45:59] 2026-03-09 11:45:01,308 | INFO     | mean x: 1773053395.5
[2026-03-09 12:45:59] 2026-03-09 11:45:01,308 | INFO     | mean y: 2356074.9814814813
[2026-03-09 12:45:59] 2026-03-09 11:45:01,308 | INFO     | intersect: -3277933114.088409
[2026-03-09 12:45:59] 2026-03-09 11:45:01,309 | INFO     | chi2: 0.0003067832692882798
[2026-03-09 12:45:59] 2026-03-09 11:45:01,309 | INFO     | current chi2=0.0003067832692882798 (change=57.63161663649989 %)
[2026-03-09 12:45:59] 2026-03-09 11:45:01,309 | INFO     | sum of square deviations: 338804492.0
[2026-03-09 12:45:59] 2026-03-09 11:45:01,309 | INFO     | sum of deviations: 639897686.0000001
[2026-03-09 12:45:59] 2026-03-09 11:45:01,309 | INFO     | mean x: 1773053548.0
[2026-03-09 12:45:59] 2026-03-09 11:45:01,309 | INFO     | mean y: 2356311.708737864
[2026-03-09 12:45:59] 2026-03-09 11:45:01,309 | INFO     | intersect: -3346397584.149556
[2026-03-09 12:45:59] 2026-03-09 11:45:01,309 | INFO     | chi2: 0.0002745971433914774
[2026-03-09 12:45:59] 2026-03-09 11:45:01,309 | INFO     | current chi2=0.0002745971433914774 (change=10.491486700520671 %)
[2026-03-09 12:45:59] 2026-03-09 11:45:01,309 | INFO     | left removable region: 30
[2026-03-09 12:45:59] 2026-03-09 11:45:01,309 | INFO     | sum of square deviations: 170944600.5
[2026-03-09 12:45:59] 2026-03-09 11:45:01,309 | INFO     | sum of deviations: 593199380.0
[2026-03-09 12:45:59] 2026-03-09 11:45:01,309 | INFO     | mean x: 1773053822.5
[2026-03-09 12:45:59] 2026-03-09 11:45:01,309 | INFO     | mean y: 2355547.43902439
[2026-03-09 12:45:59] 2026-03-09 11:45:01,309 | INFO     | intersect: -6150365422.613668
[2026-03-09 12:45:59] 2026-03-09 11:45:01,310 | INFO     | chi2: 4.64305113153161e-05
[2026-03-09 12:45:59] 2026-03-09 11:45:01,310 | INFO     | current memory leak: 3.47 B/s (using 82 data points, chi2=0.00)
[2026-03-09 12:45:59] 2026-03-09 11:45:01,310 | INFO     | could have reported an average CPU frequency of 3574 MHz (7 samples)
[2026-03-09 12:45:59] 2026-03-09 11:45:01,310 | INFO     | ..............................
[2026-03-09 12:45:59] 2026-03-09 11:45:01,310 | INFO     | . Timing measurements:
[2026-03-09 12:45:59] 2026-03-09 11:45:01,310 | INFO     | . get job = 0 s
[2026-03-09 12:45:59] 2026-03-09 11:45:01,310 | INFO     | . initial setup = 16 s
[2026-03-09 12:45:59] 2026-03-09 11:45:01,310 | INFO     | . payload setup = 16 s
[2026-03-09 12:45:59] 2026-03-09 11:45:01,310 | INFO     | . stage-in = 0 s
[2026-03-09 12:45:59] 2026-03-09 11:45:01,310 | INFO     | . payload execution = 7187 s
[2026-03-09 12:45:59] 2026-03-09 11:45:01,310 | INFO     | . stage-out = 0 s
[2026-03-09 12:45:59] 2026-03-09 11:45:01,310 | INFO     | . log creation = 0 s
[2026-03-09 12:45:59] 2026-03-09 11:45:01,310 | INFO     | ..............................
[2026-03-09 12:45:59] 2026-03-09 11:45:01,392 | INFO     | 
[2026-03-09 12:45:59] 2026-03-09 11:45:01,392 | INFO     | job summary report
[2026-03-09 12:45:59] 2026-03-09 11:45:01,392 | INFO     | --------------------------------------------------
[2026-03-09 12:45:59] 2026-03-09 11:45:01,392 | INFO     | PanDA job id: 7045950417
[2026-03-09 12:45:59] 2026-03-09 11:45:01,392 | INFO     | task id: 48998012
[2026-03-09 12:45:59] 2026-03-09 11:45:01,392 | INFO     | errors: (none)
[2026-03-09 12:45:59] 2026-03-09 11:45:01,392 | INFO     | status: LOG_TRANSFER = DONE 
[2026-03-09 12:45:59] 2026-03-09 11:45:01,392 | INFO     | pilot state: finished 
[2026-03-09 12:45:59] 2026-03-09 11:45:01,393 | INFO     | transexitcode: 0
[2026-03-09 12:45:59] 2026-03-09 11:45:01,393 | INFO     | exeerrorcode: 0
[2026-03-09 12:45:59] 2026-03-09 11:45:01,393 | INFO     | exeerrordiag: 
[2026-03-09 12:45:59] 2026-03-09 11:45:01,393 | INFO     | exitcode: 0
[2026-03-09 12:45:59] 2026-03-09 11:45:01,393 | INFO     | exitmsg: OK
[2026-03-09 12:45:59] 2026-03-09 11:45:01,393 | INFO     | cpuconsumptiontime: 27325 s
[2026-03-09 12:45:59] 2026-03-09 11:45:01,393 | INFO     | nevents: 400
[2026-03-09 12:45:59] 2026-03-09 11:45:01,393 | INFO     | neventsw: 0
[2026-03-09 12:45:59] 2026-03-09 11:45:01,393 | INFO     | pid: 3426890
[2026-03-09 12:45:59] 2026-03-09 11:45:01,393 | INFO     | pgrp: 3426890
[2026-03-09 12:45:59] 2026-03-09 11:45:01,393 | INFO     | corecount: 4
[2026-03-09 12:45:59] 2026-03-09 11:45:01,393 | INFO     | event service: False
[2026-03-09 12:45:59] 2026-03-09 11:45:01,396 | INFO     | sizes: {0: 2280275, 11: 2280275, 7207: 2307663, 7208: 2307662, 7209: 2316934}
[2026-03-09 12:45:59] 2026-03-09 11:45:01,396 | INFO     | --------------------------------------------------
[2026-03-09 12:45:59] 2026-03-09 11:45:01,397 | INFO     | 
[2026-03-09 12:45:59] 2026-03-09 11:45:01,397 | INFO     | executing command: ls -lF /var/lib/boinc/var/slot216/slots/0
[2026-03-09 12:45:59] 2026-03-09 11:45:01,418 | INFO     | queue jobs had 0 job(s) [purged]
[2026-03-09 12:45:59] 2026-03-09 11:45:01,418 | INFO     | queue payloads had 0 job(s) [purged]
[2026-03-09 12:45:59] 2026-03-09 11:45:01,418 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-09 12:45:59] 2026-03-09 11:45:01,418 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-09 12:45:59] 2026-03-09 11:45:01,418 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-09 12:45:59] 2026-03-09 11:45:01,418 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-09 12:45:59] 2026-03-09 11:45:01,418 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-09 12:45:59] 2026-03-09 11:45:01,418 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-09 12:45:59] 2026-03-09 11:45:01,419 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-09 12:45:59] 2026-03-09 11:45:01,419 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-09 12:45:59] 2026-03-09 11:45:01,419 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-09 12:45:59] 2026-03-09 11:45:01,419 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-09 12:45:59] 2026-03-09 11:45:01,419 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-09 12:45:59] 2026-03-09 11:45:01,419 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-09 12:45:59] 2026-03-09 11:45:01,419 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-09 12:45:59] 2026-03-09 11:45:01,419 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-09 12:45:59] 2026-03-09 11:45:01,419 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-09 12:45:59] 2026-03-09 11:45:01,419 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-09 12:45:59] 2026-03-09 11:45:01,419 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-09 12:45:59] 2026-03-09 11:45:01,419 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-09 12:45:59] 2026-03-09 11:45:01,419 | INFO     | job 7045950417 has completed (purged errors)
[2026-03-09 12:45:59] 2026-03-09 11:45:01,419 | INFO     | overall cleanup function is called
[2026-03-09 12:45:59] 2026-03-09 11:45:01,807 | WARNING  | process 3426890 can no longer be monitored (due to stat problems) - aborting
[2026-03-09 12:45:59] 2026-03-09 11:45:02,112 | INFO     | using path: /var/lib/boinc/var/slot216/slots/0/memory_monitor_summary.json (trf name=prmon)
[2026-03-09 12:45:59] 2026-03-09 11:45:02,113 | INFO     | using path: /var/lib/boinc/var/slot216/slots/0/memory_monitor_summary.json (trf name=prmon)
[2026-03-09 12:45:59] 2026-03-09 11:45:02,113 | WARNING  | memory limits not set in config, using defaults: 'NoneType' object has no attribute 'get'
[2026-03-09 12:45:59] 2026-03-09 11:45:02,113 | WARNING  | maxPSS not found in memory monitor output
[2026-03-09 12:45:59] 2026-03-09 11:45:02,113 | INFO     | skipping file size check of payload stdout file (/var/lib/boinc/var/slot216/slots/0/PanDA_Pilot-7045950417/payload.stdout) since it has not been created yet
[2026-03-09 12:45:59] 2026-03-09 11:45:02,113 | INFO     | executing command: df -mP /var/lib/boinc/var/slot216/slots/0
[2026-03-09 12:45:59] 2026-03-09 11:45:02,131 | INFO     | sufficient remaining disk space (20548943872 B)
[2026-03-09 12:45:59] 2026-03-09 11:45:02,132 | WARNING  | skipping size check of workdir since it has not been created yet
[2026-03-09 12:45:59] 2026-03-09 11:45:02,132 | INFO     | output file size check: skipping output file /var/lib/boinc/var/slot216/slots/0/PanDA_Pilot-7045950417/HITS.48998012._000741.pool.root.1 since it does not exist
[2026-03-09 12:45:59] 2026-03-09 11:45:02,428 | INFO     | --- collectZombieJob: --- 10, [3426890]
[2026-03-09 12:45:59] 2026-03-09 11:45:02,428 | INFO     | zombie collector waiting for pid 3426890
[2026-03-09 12:45:59] 2026-03-09 11:45:02,428 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-09 12:45:59] 2026-03-09 11:45:02,428 | INFO     | collected zombie processes
[2026-03-09 12:45:59] 2026-03-09 11:45:02,428 | INFO     | will attempt to kill all subprocesses of pid=3426890
[2026-03-09 12:45:59] 2026-03-09 11:45:02,866 | INFO     | number of running child processes to parent process 3426890: 1
[2026-03-09 12:45:59] 2026-03-09 11:45:02,866 | INFO     | maximum number of monitored processes: 6
[2026-03-09 12:45:59] 2026-03-09 11:45:02,866 | INFO     | aborting job monitoring since job object (job id=7045950417) has expired
[2026-03-09 12:45:59] 2026-03-09 11:45:03,140 | INFO     | process IDs to be killed: [3426890] (in reverse order)
[2026-03-09 12:45:59] 2026-03-09 11:45:03,387 | WARNING  | found no corresponding commands to process id(s)
[2026-03-09 12:45:59] 2026-03-09 11:45:03,387 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-09 12:45:59] 2026-03-09 11:45:03,418 | INFO     | did not find any defunct processes belonging to 3426890
[2026-03-09 12:45:59] 2026-03-09 11:45:03,447 | INFO     | did not find any defunct processes belonging to 3426890
[2026-03-09 12:45:59] 2026-03-09 11:45:03,448 | INFO     | ready for new job
[2026-03-09 12:45:59] 2026-03-09 11:45:03,448 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-09 12:45:59] 2026-03-09 11:45:03,449 | INFO     | **************************************
[2026-03-09 12:45:59] 2026-03-09 11:45:03,449 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-03-09 12:45:59] 2026-03-09 11:45:03,449 | INFO     | **************************************
[2026-03-09 12:45:59] 2026-03-09 11:45:03,449 | INFO     | 
[2026-03-09 12:45:59] 2026-03-09 11:45:03,456 | INFO     | architecture information:
[2026-03-09 12:45:59] 2026-03-09 11:45:03,456 | INFO     | executing command: cat /etc/os-release
[2026-03-09 12:45:59] 2026-03-09 11:45:03,478 | INFO     | cat /etc/os-release:
[2026-03-09 12:45:59] NAME="CentOS Linux"
[2026-03-09 12:45:59] VERSION="7 (Core)"
[2026-03-09 12:45:59] ID="centos"
[2026-03-09 12:45:59] ID_LIKE="rhel fedora"
[2026-03-09 12:45:59] VERSION_ID="7"
[2026-03-09 12:45:59] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-09 12:45:59] ANSI_COLOR="0;31"
[2026-03-09 12:45:59] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-09 12:45:59] HOME_URL="https://www.centos.org/"
[2026-03-09 12:45:59] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-09 12:45:59] 
[2026-03-09 12:45:59] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-09 12:45:59] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-09 12:45:59] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-09 12:45:59] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-09 12:45:59] 
[2026-03-09 12:45:59] 2026-03-09 11:45:03,478 | INFO     | **************************************
[2026-03-09 12:45:59] 2026-03-09 11:45:03,981 | INFO     | executing command: df -mP /var/lib/boinc/var/slot216/slots/0
[2026-03-09 12:45:59] 2026-03-09 11:45:03,999 | INFO     | sufficient remaining disk space (20544749568 B)
[2026-03-09 12:45:59] 2026-03-09 11:45:03,999 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-09 12:45:59] 2026-03-09 11:45:03,999 | INFO     | current server update state: UPDATING_FINAL
[2026-03-09 12:45:59] 2026-03-09 11:45:03,999 | INFO     | update_server=False
[2026-03-09 12:45:59] 2026-03-09 11:45:03,999 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-09 12:45:59] 2026-03-09 11:45:03,999 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-09 12:45:59] 2026-03-09 11:45:03,999 | INFO     | aborting loop
[2026-03-09 12:45:59] 2026-03-09 11:45:04,233 | INFO     | all payload control threads have been joined
[2026-03-09 12:45:59] 2026-03-09 11:45:04,234 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-09 12:45:59] 2026-03-09 11:45:04,515 | INFO     | all data control threads have been joined
[2026-03-09 12:45:59] 2026-03-09 11:45:05,004 | INFO     | [job] retrieve thread has finished
[2026-03-09 12:45:59] 2026-03-09 11:45:05,004 | INFO     | [job] job monitor thread has finished
[2026-03-09 12:45:59] 2026-03-09 11:45:05,238 | INFO     | [payload] control thread has finished
[2026-03-09 12:45:59] 2026-03-09 11:45:05,393 | INFO     | [data] copytool_in thread has finished
[2026-03-09 12:45:59] 2026-03-09 11:45:05,520 | INFO     | [data] control thread has finished
[2026-03-09 12:45:59] 2026-03-09 11:45:05,571 | INFO     | [payload] failed_post thread has finished
[2026-03-09 12:45:59] 2026-03-09 11:45:05,624 | INFO     | [payload] validate_post thread has finished
[2026-03-09 12:45:59] 2026-03-09 11:45:05,684 | INFO     | all job control threads have been joined
[2026-03-09 12:45:59] 2026-03-09 11:45:05,963 | INFO     | job.realtimelogging is not enabled
[2026-03-09 12:45:59] 2026-03-09 11:45:06,054 | INFO     | [job] validate thread has finished
[2026-03-09 12:45:59] 2026-03-09 11:45:06,166 | INFO     | [job] create_data_payload thread has finished
[2026-03-09 12:45:59] 2026-03-09 11:45:06,239 | INFO     | [data] copytool_out thread has finished
[2026-03-09 12:45:59] 2026-03-09 11:45:06,284 | INFO     | [payload] execute_payloads thread has finished
[2026-03-09 12:45:59] 2026-03-09 11:45:06,365 | INFO     | [payload] validate_pre thread has finished
[2026-03-09 12:45:59] 2026-03-09 11:45:06,374 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-09 12:45:59] 2026-03-09 11:45:06,692 | INFO     | [job] control thread has finished
[2026-03-09 12:45:59] 2026-03-09 11:45:06,967 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-09 12:45:59] 2026-03-09 11:45:07,286 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-09 12:45:59] 2026-03-09 11:45:07,379 | INFO     | [job] queue monitor thread has finished
[2026-03-09 12:45:59] 2026-03-09 11:45:11,291 | INFO     | [data] queue_monitor thread has finished
[2026-03-09 12:45:59] 2026-03-09 11:45:33,420 | INFO     | PID=3413285 has CPU usage=9.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-03-09 12:45:59] 2026-03-09 11:45:33,421 | INFO     | .. there are 53 such processes running
[2026-03-09 12:45:59] 2026-03-09 11:45:33,421 | INFO     | found 0 job(s) in 20 queues
[2026-03-09 12:45:59] 2026-03-09 11:45:33,421 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-09 12:45:59] 2026-03-09 11:45:33,421 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-09 12:45:59] 2026-03-09 11:45:52,628 | INFO     | [monitor] cgroup control has ended
[2026-03-09 12:45:59] 2026-03-09 11:45:54,013 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23078792816448)>', '<ExcThread(monitor, started 23078540396288)>']
[2026-03-09 12:45:59] 2026-03-09 11:45:54,525 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-09 12:45:59] 2026-03-09 11:45:54,525 | INFO     | [monitor] control thread has ended
[2026-03-09 12:45:59] 2026-03-09 11:45:59,038 | INFO     | all workflow threads have been joined
[2026-03-09 12:45:59] 2026-03-09 11:45:59,038 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-09 12:45:59] 2026-03-09 11:45:59,038 | INFO     | traces error code: 0
[2026-03-09 12:45:59] 2026-03-09 11:45:59,038 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-09 12:45:59] 2026-03-09 11:45:59,188 [wrapper] ==== pilot stdout END ====
[2026-03-09 12:45:59] 2026-03-09 11:45:59,191 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-09 12:45:59] 2026-03-09 11:45:59,192 [wrapper] pilotpid: 3413285
[2026-03-09 12:45:59] 2026-03-09 11:45:59,195 [wrapper] Pilot exit status: 0
[2026-03-09 12:45:59] 2026-03-09 11:45:59,202 [wrapper] pandaids: 7045950417
[2026-03-09 12:45:59] 2026-03-09 11:45:59,322 [wrapper] cleanup supervisor_pilot  328292 3413286
[2026-03-09 12:45:59] 2026-03-09 11:45:59,324 [wrapper] Test setup, not cleaning
[2026-03-09 12:45:59] 2026-03-09 11:45:59,326 [wrapper] apfmon messages muted
[2026-03-09 12:45:59] 2026-03-09 11:45:59,328 [wrapper] ==== wrapper stdout END ====
[2026-03-09 12:45:59] 2026-03-09 11:45:59,329 [wrapper] ==== wrapper stderr END ====
[2026-03-09 12:45:59]  *** Error codes and diagnostics ***
[2026-03-09 12:45:59]     "exeErrorCode": 0,
[2026-03-09 12:45:59]     "exeErrorDiag": "",
[2026-03-09 12:45:59]     "pilotErrorCode": 0,
[2026-03-09 12:45:59]     "pilotErrorDiag": "",
[2026-03-09 12:45:59]  *** Listing of results directory ***
[2026-03-09 12:45:59] total 598788
[2026-03-09 12:45:59] -rw-r--r--. 1 boinc boinc    584627 Mar  8 08:59 pilot3.tar.gz
[2026-03-09 12:45:59] -rw-r--r--. 1 boinc boinc      5111 Mar  8 09:56 queuedata.json
[2026-03-09 12:45:59] -rwx------. 1 boinc boinc     36322 Mar  8 09:56 runpilot2-wrapper.sh
[2026-03-09 12:45:59] -rw-r--r--. 1 boinc boinc       100 Mar  9 10:43 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-09 12:45:59] -rwxr-xr-x. 1 boinc boinc      7986 Mar  9 10:43 run_atlas
[2026-03-09 12:45:59] -rw-r--r--. 1 boinc boinc       105 Mar  9 10:43 job.xml
[2026-03-09 12:45:59] -rw-r--r--. 1 boinc boinc      6709 Mar  9 10:43 init_data.xml
[2026-03-09 12:45:59] -rw-r--r--. 2 boinc boinc 341410284 Mar  9 10:43 EVNT.48998009._000040.pool.root.1
[2026-03-09 12:45:59] -rw-r--r--. 2 boinc boinc     15845 Mar  9 10:43 start_atlas.sh
[2026-03-09 12:45:59] drwxrwx--x. 2 boinc boinc      4096 Mar  9 10:43 shared
[2026-03-09 12:45:59] -rw-r--r--. 2 boinc boinc    597966 Mar  9 10:43 input.tar.gz
[2026-03-09 12:45:59] -rw-r--r--. 1 boinc boinc         0 Mar  9 10:43 boinc_lockfile
[2026-03-09 12:45:59] -rw-r--r--. 1 boinc boinc      2585 Mar  9 10:43 pandaJob.out
[2026-03-09 12:45:59] -rw-------. 1 boinc boinc    987066 Mar  9 10:44 agis_schedconf.cvmfs.json
[2026-03-09 12:45:59] -rw-------. 1 boinc boinc   1511578 Mar  9 10:44 agis_ddmendpoints.agis.ALL.json
[2026-03-09 12:45:59] -rw-------. 1 boinc boinc       445 Mar  9 10:44 workernode_map.json
[2026-03-09 12:45:59] drwx------. 5 boinc boinc      4096 Mar  9 10:44 pilot3
[2026-03-09 12:45:59] -rw-------. 1 boinc boinc 265161168 Mar  9 12:44 HITS.48998012._000741.pool.root.1
[2026-03-09 12:45:59] -rw-------. 1 boinc boinc        95 Mar  9 12:44 pilot_heartbeat.json
[2026-03-09 12:45:59] -rw-r--r--. 1 boinc boinc       529 Mar  9 12:44 boinc_task_state.xml
[2026-03-09 12:45:59] -rw-------. 1 boinc boinc      1031 Mar  9 12:44 memory_monitor_summary.json
[2026-03-09 12:45:59] -rw-------. 1 boinc boinc    306107 Mar  9 12:45 log.48998012._000741.job.log.tgz.1
[2026-03-09 12:45:59] -rw-------. 1 boinc boinc      6352 Mar  9 12:45 heartbeat.json
[2026-03-09 12:45:59] -rw-r--r--. 1 boinc boinc      8192 Mar  9 12:45 boinc_mmap_file
[2026-03-09 12:45:59] -rw-r--r--. 1 boinc boinc        27 Mar  9 12:45 wrapper_checkpoint.txt
[2026-03-09 12:45:59] -rw-------. 1 boinc boinc      4902 Mar  9 12:45 pilotlog.txt
[2026-03-09 12:45:59] -rw-------. 1 boinc boinc   1031139 Mar  9 12:45 log.48998012._000741.job.log.1
[2026-03-09 12:45:59] -rw-------. 1 boinc boinc       357 Mar  9 12:45 output.list
[2026-03-09 12:45:59] -rw-r--r--. 1 boinc boinc       620 Mar  9 12:45 runtime_log
[2026-03-09 12:45:59] -rw-------. 1 boinc boinc   1351680 Mar  9 12:45 result.tar.gz
[2026-03-09 12:45:59] -rw-r--r--. 1 boinc boinc      9221 Mar  9 12:45 runtime_log.err
[2026-03-09 12:45:59] -rw-------. 1 boinc boinc       663 Mar  9 12:45 FcONDm36OJ9n9Rq4apOajLDm4fhM0noT9bVooX4SDmYHWLDmi6xTYo.diag
[2026-03-09 12:45:59] -rw-r--r--. 1 boinc boinc     21260 Mar  9 12:45 stderr.txt
[2026-03-09 12:45:59] HITS file was successfully produced:
[2026-03-09 12:45:59] -rw-------. 1 boinc boinc 265161168 Mar  9 12:44 shared/HITS.pool.root.1
[2026-03-09 12:45:59]  *** Contents of shared directory: ***
[2026-03-09 12:45:59] total 594288
[2026-03-09 12:45:59] -rw-r--r--. 2 boinc boinc 341410284 Mar  9 10:43 ATLAS.root_0
[2026-03-09 12:45:59] -rw-r--r--. 2 boinc boinc     15845 Mar  9 10:43 start_atlas.sh
[2026-03-09 12:45:59] -rw-r--r--. 2 boinc boinc    597966 Mar  9 10:43 input.tar.gz
[2026-03-09 12:45:59] -rw-------. 1 boinc boinc 265161168 Mar  9 12:44 HITS.pool.root.1
[2026-03-09 12:45:59] -rw-------. 1 boinc boinc   1351680 Mar  9 12:45 result.tar.gz
12:46:00 (3404361): run_atlas exited; CPU time 27638.345613
12:46:00 (3404361): called boinc_finish(0)

</stderr_txt>
]]>

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