Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
23:30:57 (2266147): wrapper (7.7.26015): starting
23:30:57 (2266147): wrapper: running run_atlas (--nthreads 3)
[2026-03-08 23:30:57] Arguments: --nthreads 3
[2026-03-08 23:30:57] Threads: 3
[2026-03-08 23:30:57] Checking for CVMFS
[2026-03-08 23:30:57] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-08 23:30:59] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-08 23:30:59] Running cvmfs_config stat atlas.cern.ch
[2026-03-08 23:30:59] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-08 23:30:59] 2.9.2.0 30300 16324 88272 157055 0 49 22635500 36864001 0 130560 0 6316007 99.982 607179 14360 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-03-08 23:30:59] CVMFS is ok
[2026-03-08 23:30:59] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-08 23:30:59] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-08 23:30:59] Further information can be found at the LHC@home message board.
[2026-03-08 23:30:59] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-08 23:30:59] Checking for apptainer binary...
[2026-03-08 23:30:59] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-08 23:30:59] Running /usr/bin/apptainer --version
[2026-03-08 23:30:59] apptainer version 1.4.1-1.1
[2026-03-08 23:30:59] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-08 23:30:59] legendA257
[2026-03-08 23:30:59] apptainer works
[2026-03-08 23:30:59] Set ATHENA_PROC_NUMBER=3
[2026-03-08 23:30:59] Set ATHENA_CORE_NUMBER=3
[2026-03-08 23:30:59] Starting ATLAS job with PandaID=7032737841
[2026-03-08 23:30:59] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-09 01:20:21]  *** The last 200 lines of the pilot log: ***
[2026-03-09 01:20:21] 2026-03-09 00:19:35,256 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-09 01:20:21] 2026-03-09 00:19:35,256 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-09 01:20:21] 2026-03-09 00:19:35,256 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-09 01:20:21] 2026-03-09 00:19:35,256 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-09 01:20:21] 2026-03-09 00:19:35,256 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-09 01:20:21] 2026-03-09 00:19:35,256 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-09 01:20:21] 2026-03-09 00:19:35,256 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-09 01:20:21] 2026-03-09 00:19:35,256 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-09 01:20:21] 2026-03-09 00:19:35,256 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-09 01:20:21] 2026-03-09 00:19:35,256 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-09 01:20:21] 2026-03-09 00:19:35,256 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-09 01:20:21] 2026-03-09 00:19:35,256 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-09 01:20:21] 2026-03-09 00:19:35,256 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-09 01:20:21] 2026-03-09 00:19:35,256 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-09 01:20:21] 2026-03-09 00:19:35,256 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-09 01:20:21] 2026-03-09 00:19:35,256 | INFO     | job 7032737841 has completed (purged errors)
[2026-03-09 01:20:21] 2026-03-09 00:19:35,256 | INFO     | overall cleanup function is called
[2026-03-09 01:20:21] 2026-03-09 00:19:36,263 | INFO     | --- collectZombieJob: --- 10, [2274605]
[2026-03-09 01:20:21] 2026-03-09 00:19:36,263 | INFO     | zombie collector waiting for pid 2274605
[2026-03-09 01:20:21] 2026-03-09 00:19:36,263 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-09 01:20:21] 2026-03-09 00:19:36,263 | INFO     | collected zombie processes
[2026-03-09 01:20:21] 2026-03-09 00:19:36,263 | INFO     | will attempt to kill all subprocesses of pid=2274605
[2026-03-09 01:20:21] 2026-03-09 00:19:36,304 | INFO     | process IDs to be killed: [2274605] (in reverse order)
[2026-03-09 01:20:21] 2026-03-09 00:19:36,328 | WARNING  | found no corresponding commands to process id(s)
[2026-03-09 01:20:21] 2026-03-09 00:19:36,328 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-09 01:20:21] 2026-03-09 00:19:36,329 | INFO     | did not find any defunct processes belonging to 2274605
[2026-03-09 01:20:21] 2026-03-09 00:19:36,330 | INFO     | did not find any defunct processes belonging to 2274605
[2026-03-09 01:20:21] 2026-03-09 00:19:36,330 | INFO     | ready for new job
[2026-03-09 01:20:21] 2026-03-09 00:19:36,330 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-09 01:20:21] 2026-03-09 00:19:36,331 | INFO     | **************************************
[2026-03-09 01:20:21] 2026-03-09 00:19:36,331 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-03-09 01:20:21] 2026-03-09 00:19:36,331 | INFO     | **************************************
[2026-03-09 01:20:21] 2026-03-09 00:19:36,331 | INFO     | 
[2026-03-09 01:20:21] 2026-03-09 00:19:36,331 | INFO     | architecture information:
[2026-03-09 01:20:21] 2026-03-09 00:19:36,331 | INFO     | executing command: cat /etc/os-release
[2026-03-09 01:20:21] 2026-03-09 00:19:36,340 | INFO     | cat /etc/os-release:
[2026-03-09 01:20:21] NAME="CentOS Linux"
[2026-03-09 01:20:21] VERSION="7 (Core)"
[2026-03-09 01:20:21] ID="centos"
[2026-03-09 01:20:21] ID_LIKE="rhel fedora"
[2026-03-09 01:20:21] VERSION_ID="7"
[2026-03-09 01:20:21] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-09 01:20:21] ANSI_COLOR="0;31"
[2026-03-09 01:20:21] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-09 01:20:21] HOME_URL="https://www.centos.org/"
[2026-03-09 01:20:21] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-09 01:20:21] 
[2026-03-09 01:20:21] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-09 01:20:21] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-09 01:20:21] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-09 01:20:21] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-09 01:20:21] 
[2026-03-09 01:20:21] 2026-03-09 00:19:36,340 | INFO     | **************************************
[2026-03-09 01:20:21] 2026-03-09 00:19:36,843 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-03-09 01:20:21] 2026-03-09 00:19:36,857 | INFO     | sufficient remaining disk space (335957458944 B)
[2026-03-09 01:20:21] 2026-03-09 00:19:36,857 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-09 01:20:21] 2026-03-09 00:19:36,857 | INFO     | current server update state: UPDATING_FINAL
[2026-03-09 01:20:21] 2026-03-09 00:19:36,857 | INFO     | update_server=False
[2026-03-09 01:20:21] 2026-03-09 00:19:36,857 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-09 01:20:21] 2026-03-09 00:19:36,857 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-09 01:20:21] 2026-03-09 00:19:37,140 | INFO     | all payload control threads have been joined
[2026-03-09 01:20:21] 2026-03-09 00:19:37,255 | INFO     | all data control threads have been joined
[2026-03-09 01:20:21] 2026-03-09 00:19:37,326 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-03-09 01:20:21] 2026-03-09 00:19:37,327 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-03-09 01:20:21] 2026-03-09 00:19:37,327 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-09 01:20:21] 2026-03-09 00:19:37,327 | INFO     | will abort loop
[2026-03-09 01:20:21] 2026-03-09 00:19:37,416 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-09 01:20:21] 2026-03-09 00:19:37,661 | INFO     | all job control threads have been joined
[2026-03-09 01:20:21] 2026-03-09 00:19:37,863 | INFO     | [job] retrieve thread has finished
[2026-03-09 01:20:21] 2026-03-09 00:19:37,863 | INFO     | [job] queue monitor thread has finished
[2026-03-09 01:20:21] 2026-03-09 00:19:38,145 | INFO     | [payload] control thread has finished
[2026-03-09 01:20:21] 2026-03-09 00:19:38,261 | INFO     | [data] control thread has finished
[2026-03-09 01:20:21] 2026-03-09 00:19:38,328 | INFO     | [job] job monitor thread has finished
[2026-03-09 01:20:21] 2026-03-09 00:19:38,597 | INFO     | [payload] execute_payloads thread has finished
[2026-03-09 01:20:21] 2026-03-09 00:19:38,667 | INFO     | [job] control thread has finished
[2026-03-09 01:20:21] 2026-03-09 00:19:38,763 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-09 01:20:21] 2026-03-09 00:19:38,876 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-09 01:20:21] 2026-03-09 00:19:38,952 | INFO     | [job] validate thread has finished
[2026-03-09 01:20:21] 2026-03-09 00:19:38,996 | INFO     | [job] create_data_payload thread has finished
[2026-03-09 01:20:21] 2026-03-09 00:19:39,081 | INFO     | [payload] validate_pre thread has finished
[2026-03-09 01:20:21] 2026-03-09 00:19:39,108 | INFO     | [data] copytool_in thread has finished
[2026-03-09 01:20:21] 2026-03-09 00:19:39,226 | INFO     | [payload] validate_post thread has finished
[2026-03-09 01:20:21] 2026-03-09 00:19:39,301 | INFO     | [payload] failed_post thread has finished
[2026-03-09 01:20:21] 2026-03-09 00:19:39,422 | INFO     | [data] copytool_out thread has finished
[2026-03-09 01:20:21] 2026-03-09 00:19:42,883 | INFO     | [data] queue_monitor thread has finished
[2026-03-09 01:20:21] 2026-03-09 00:20:07,948 | INFO     | PID=2270183 has CPU usage=1.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-03-09 01:20:21] 2026-03-09 00:20:07,949 | INFO     | found 0 job(s) in 20 queues
[2026-03-09 01:20:21] 2026-03-09 00:20:07,949 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-09 01:20:21] 2026-03-09 00:20:07,949 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-09 01:20:21] 2026-03-09 00:20:15,802 | INFO     | [monitor] cgroup control has ended
[2026-03-09 01:20:21] 2026-03-09 00:20:16,335 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140455660918592)>', '<ExcThread(monitor, started 140455378695936)>']
[2026-03-09 01:20:21] 2026-03-09 00:20:16,992 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-09 01:20:21] 2026-03-09 00:20:16,992 | INFO     | [monitor] control thread has ended
[2026-03-09 01:20:21] 2026-03-09 00:20:21,352 | INFO     | all workflow threads have been joined
[2026-03-09 01:20:21] 2026-03-09 00:20:21,352 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-09 01:20:21] 2026-03-09 00:20:21,352 | INFO     | traces error code: 0
[2026-03-09 01:20:21] 2026-03-09 00:20:21,352 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-09 01:20:21] 2026-03-09 00:20:21,403 [wrapper] ==== pilot stdout END ====
[2026-03-09 01:20:21] 2026-03-09 00:20:21,405 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-09 01:20:21] 2026-03-09 00:20:21,408 [wrapper] pilotpid: 2270183
[2026-03-09 01:20:21] 2026-03-09 00:20:21,410 [wrapper] Pilot exit status: 0
[2026-03-09 01:20:21] 2026-03-09 00:20:21,417 [wrapper] pandaids: 7032737841
[2026-03-09 01:20:21] 2026-03-09 00:20:21,433 [wrapper] cleanup supervisor_pilot 2281150 2270184
[2026-03-09 01:20:21] 2026-03-09 00:20:21,435 [wrapper] Test setup, not cleaning
[2026-03-09 01:20:21] 2026-03-09 00:20:21,438 [wrapper] apfmon messages muted
[2026-03-09 01:20:21] 2026-03-09 00:20:21,440 [wrapper] ==== wrapper stdout END ====
[2026-03-09 01:20:21] 2026-03-09 00:20:21,442 [wrapper] ==== wrapper stderr END ====
[2026-03-09 01:20:21]  *** Error codes and diagnostics ***
[2026-03-09 01:20:21]     "exeErrorCode": 0,
[2026-03-09 01:20:21]     "exeErrorDiag": "",
[2026-03-09 01:20:21]     "pilotErrorCode": 0,
[2026-03-09 01:20:21]     "pilotErrorDiag": "",
[2026-03-09 01:20:21]  *** Listing of results directory ***
[2026-03-09 01:20:21] total 477104
[2026-03-09 01:20:21] -rw-r--r-- 1 boinc boinc    584627 Feb 28 06:38 pilot3.tar.gz
[2026-03-09 01:20:21] -rwx------ 1 boinc boinc     36322 Feb 28 06:40 runpilot2-wrapper.sh
[2026-03-09 01:20:21] -rw-r--r-- 1 boinc boinc      5111 Feb 28 06:41 queuedata.json
[2026-03-09 01:20:21] -rw-r--r-- 1 boinc boinc       100 Mar  8 23:30 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-09 01:20:21] -rwxr-xr-x 1 boinc boinc      7986 Mar  8 23:30 run_atlas
[2026-03-09 01:20:21] -rw-r--r-- 1 boinc boinc       105 Mar  8 23:30 job.xml
[2026-03-09 01:20:21] -rw-r--r-- 2 boinc boinc 270945847 Mar  8 23:30 EVNT.48451564._000003.pool.root.1
[2026-03-09 01:20:21] -rw-r--r-- 2 boinc boinc    597981 Mar  8 23:30 input.tar.gz
[2026-03-09 01:20:21] -rw-r--r-- 2 boinc boinc     15845 Mar  8 23:30 start_atlas.sh
[2026-03-09 01:20:21] drwxrwx--x 2 boinc boinc      4096 Mar  8 23:30 shared
[2026-03-09 01:20:21] -rw-r--r-- 1 boinc boinc         0 Mar  8 23:30 boinc_setup_complete
[2026-03-09 01:20:21] -rw-r--r-- 1 boinc boinc      6443 Mar  8 23:30 init_data.xml
[2026-03-09 01:20:21] -rw-r--r-- 1 boinc boinc         0 Mar  8 23:30 boinc_lockfile
[2026-03-09 01:20:21] -rw-r--r-- 1 boinc boinc      2621 Mar  8 23:30 pandaJob.out
[2026-03-09 01:20:21] -rw------- 1 boinc boinc    999108 Mar  8 23:31 agis_schedconf.cvmfs.json
[2026-03-09 01:20:21] -rw------- 1 boinc boinc   1511578 Mar  8 23:31 agis_ddmendpoints.agis.ALL.json
[2026-03-09 01:20:21] -rw------- 1 boinc boinc       421 Mar  8 23:31 workernode_map.json
[2026-03-09 01:20:21] drwx------ 5 boinc boinc      4096 Mar  8 23:31 pilot3
[2026-03-09 01:20:21] -rw------- 1 boinc boinc 211287777 Mar  9 01:19 HITS.48843692._000051.pool.root.1
[2026-03-09 01:20:21] -rw-r--r-- 1 boinc boinc       529 Mar  9 01:19 boinc_task_state.xml
[2026-03-09 01:20:21] -rw------- 1 boinc boinc      1018 Mar  9 01:19 memory_monitor_summary.json
[2026-03-09 01:20:21] -rw------- 1 boinc boinc    262666 Mar  9 01:19 log.48843692._000051.job.log.tgz.1
[2026-03-09 01:20:21] -rw------- 1 boinc boinc      6300 Mar  9 01:19 heartbeat.json
[2026-03-09 01:20:21] -rw------- 1 boinc boinc        95 Mar  9 01:20 pilot_heartbeat.json
[2026-03-09 01:20:21] -rw-r--r-- 1 boinc boinc        27 Mar  9 01:20 wrapper_checkpoint.txt
[2026-03-09 01:20:21] -rw-r--r-- 1 boinc boinc      8192 Mar  9 01:20 boinc_mmap_file
[2026-03-09 01:20:21] -rw------- 1 boinc boinc      4934 Mar  9 01:20 pilotlog.txt
[2026-03-09 01:20:21] -rw------- 1 boinc boinc    940624 Mar  9 01:20 log.48843692._000051.job.log.1
[2026-03-09 01:20:21] -rw------- 1 boinc boinc       357 Mar  9 01:20 output.list
[2026-03-09 01:20:21] -rw-r--r-- 1 boinc boinc       620 Mar  9 01:20 runtime_log
[2026-03-09 01:20:21] -rw------- 1 boinc boinc   1218560 Mar  9 01:20 result.tar.gz
[2026-03-09 01:20:21] -rw-r--r-- 1 boinc boinc      8916 Mar  9 01:20 runtime_log.err
[2026-03-09 01:20:21] -rw------- 1 boinc boinc       661 Mar  9 01:20 KSqLDmIFSG9nsSi4ap6QjLDmwznN0nGgGQJmIVkRDmWV6KDmYA336n.diag
[2026-03-09 01:20:21] -rw-r--r-- 1 boinc boinc     12579 Mar  9 01:20 stderr.txt
[2026-03-09 01:20:21] HITS file was successfully produced:
[2026-03-09 01:20:21] -rw------- 1 boinc boinc 211287777 Mar  9 01:19 shared/HITS.pool.root.1
[2026-03-09 01:20:21]  *** Contents of shared directory: ***
[2026-03-09 01:20:21] total 472728
[2026-03-09 01:20:21] -rw-r--r-- 2 boinc boinc 270945847 Mar  8 23:30 ATLAS.root_0
[2026-03-09 01:20:21] -rw-r--r-- 2 boinc boinc    597981 Mar  8 23:30 input.tar.gz
[2026-03-09 01:20:21] -rw-r--r-- 2 boinc boinc     15845 Mar  8 23:30 start_atlas.sh
[2026-03-09 01:20:21] -rw------- 1 boinc boinc 211287777 Mar  9 01:19 HITS.pool.root.1
[2026-03-09 01:20:21] -rw------- 1 boinc boinc   1218560 Mar  9 01:20 result.tar.gz
01:20:23 (2266147): run_atlas exited; CPU time 18839.865284
01:20:23 (2266147): called boinc_finish(0)

</stderr_txt>
]]>

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