Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
21:16:25 (1340299): wrapper (7.7.26015): starting
21:16:25 (1340299): wrapper: running run_atlas (--nthreads 3)
[2026-03-08 21:16:25] Arguments: --nthreads 3
[2026-03-08 21:16:25] Threads: 3
[2026-03-08 21:16:25] Checking for CVMFS
[2026-03-08 21:16:26] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-08 21:16:26] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-08 21:16:26] Running cvmfs_config stat atlas.cern.ch
[2026-03-08 21:16:26] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-08 21:16:26] 2.9.2.0 12714 9232 87332 157052 3 9 21653881 36864001 0 130560 0 3736779 99.983 335923 12951 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-03-08 21:16:26] CVMFS is ok
[2026-03-08 21:16:26] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-08 21:16:26] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-08 21:16:26] Further information can be found at the LHC@home message board.
[2026-03-08 21:16:26] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-08 21:16:26] Checking for apptainer binary...
[2026-03-08 21:16:26] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-08 21:16:26] Running /usr/bin/apptainer --version
[2026-03-08 21:16:26] apptainer version 1.4.1-1.1
[2026-03-08 21:16:26] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-08 21:16:26] thA332
[2026-03-08 21:16:26] apptainer works
[2026-03-08 21:16:26] Set ATHENA_PROC_NUMBER=3
[2026-03-08 21:16:26] Set ATHENA_CORE_NUMBER=3
[2026-03-08 21:16:26] Starting ATLAS job with PandaID=7032959248
[2026-03-08 21:16:26] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-09 01:08:56]  *** The last 200 lines of the pilot log: ***
[2026-03-09 01:08:56] 2026-03-09 00:07:56,342 | INFO     | queue jobs had 0 job(s) [purged]
[2026-03-09 01:08:56] 2026-03-09 00:07:56,342 | INFO     | queue payloads had 0 job(s) [purged]
[2026-03-09 01:08:56] 2026-03-09 00:07:56,342 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-09 01:08:56] 2026-03-09 00:07:56,342 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-09 01:08:56] 2026-03-09 00:07:56,342 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-09 01:08:56] 2026-03-09 00:07:56,342 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-09 01:08:56] 2026-03-09 00:07:56,342 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-09 01:08:56] 2026-03-09 00:07:56,342 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-09 01:08:56] 2026-03-09 00:07:56,342 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-09 01:08:56] 2026-03-09 00:07:56,342 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-09 01:08:56] 2026-03-09 00:07:56,342 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-09 01:08:56] 2026-03-09 00:07:56,342 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-09 01:08:56] 2026-03-09 00:07:56,342 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-09 01:08:56] 2026-03-09 00:07:56,342 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-09 01:08:56] 2026-03-09 00:07:56,342 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-09 01:08:56] 2026-03-09 00:07:56,342 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-09 01:08:56] 2026-03-09 00:07:56,342 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-09 01:08:56] 2026-03-09 00:07:56,342 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-09 01:08:56] 2026-03-09 00:07:56,342 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-09 01:08:56] 2026-03-09 00:07:56,342 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-09 01:08:56] 2026-03-09 00:07:56,342 | INFO     | job 7032959248 has completed (purged errors)
[2026-03-09 01:08:56] 2026-03-09 00:07:56,342 | INFO     | overall cleanup function is called
[2026-03-09 01:08:56] 2026-03-09 00:07:57,349 | INFO     | --- collectZombieJob: --- 10, [1348765]
[2026-03-09 01:08:56] 2026-03-09 00:07:57,349 | INFO     | zombie collector waiting for pid 1348765
[2026-03-09 01:08:56] 2026-03-09 00:07:57,349 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-09 01:08:56] 2026-03-09 00:07:57,349 | INFO     | collected zombie processes
[2026-03-09 01:08:56] 2026-03-09 00:07:57,349 | INFO     | will attempt to kill all subprocesses of pid=1348765
[2026-03-09 01:08:56] 2026-03-09 00:07:57,391 | INFO     | process IDs to be killed: [1348765] (in reverse order)
[2026-03-09 01:08:56] 2026-03-09 00:07:57,415 | WARNING  | found no corresponding commands to process id(s)
[2026-03-09 01:08:56] 2026-03-09 00:07:57,415 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-09 01:08:56] 2026-03-09 00:07:57,416 | INFO     | did not find any defunct processes belonging to 1348765
[2026-03-09 01:08:56] 2026-03-09 00:07:57,417 | INFO     | did not find any defunct processes belonging to 1348765
[2026-03-09 01:08:56] 2026-03-09 00:07:57,417 | INFO     | ready for new job
[2026-03-09 01:08:56] 2026-03-09 00:07:57,417 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-09 01:08:56] 2026-03-09 00:07:57,418 | INFO     | **************************************
[2026-03-09 01:08:56] 2026-03-09 00:07:57,418 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-03-09 01:08:56] 2026-03-09 00:07:57,418 | INFO     | **************************************
[2026-03-09 01:08:56] 2026-03-09 00:07:57,418 | INFO     | 
[2026-03-09 01:08:56] 2026-03-09 00:07:57,419 | INFO     | architecture information:
[2026-03-09 01:08:56] 2026-03-09 00:07:57,419 | INFO     | executing command: cat /etc/os-release
[2026-03-09 01:08:56] 2026-03-09 00:07:57,427 | INFO     | cat /etc/os-release:
[2026-03-09 01:08:56] NAME="CentOS Linux"
[2026-03-09 01:08:56] VERSION="7 (Core)"
[2026-03-09 01:08:56] ID="centos"
[2026-03-09 01:08:56] ID_LIKE="rhel fedora"
[2026-03-09 01:08:56] VERSION_ID="7"
[2026-03-09 01:08:56] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-09 01:08:56] ANSI_COLOR="0;31"
[2026-03-09 01:08:56] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-09 01:08:56] HOME_URL="https://www.centos.org/"
[2026-03-09 01:08:56] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-09 01:08:56] 
[2026-03-09 01:08:56] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-09 01:08:56] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-09 01:08:56] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-09 01:08:56] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-09 01:08:56] 
[2026-03-09 01:08:56] 2026-03-09 00:07:57,428 | INFO     | **************************************
[2026-03-09 01:08:56] 2026-03-09 00:07:57,931 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-03-09 01:08:56] 2026-03-09 00:07:57,944 | INFO     | sufficient remaining disk space (236852346880 B)
[2026-03-09 01:08:56] 2026-03-09 00:07:57,944 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-09 01:08:56] 2026-03-09 00:07:57,944 | INFO     | current server update state: UPDATING_FINAL
[2026-03-09 01:08:56] 2026-03-09 00:07:57,945 | INFO     | update_server=False
[2026-03-09 01:08:56] 2026-03-09 00:07:57,945 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-09 01:08:56] 2026-03-09 00:07:57,945 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-09 01:08:56] 2026-03-09 00:07:57,945 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-09 01:08:56] 2026-03-09 00:07:57,945 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-09 01:08:56] 2026-03-09 00:07:57,945 | INFO     | aborting loop
[2026-03-09 01:08:56] 2026-03-09 00:07:58,038 | INFO     | all job control threads have been joined
[2026-03-09 01:08:56] 2026-03-09 00:07:58,203 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-09 01:08:56] 2026-03-09 00:07:58,339 | INFO     | all data control threads have been joined
[2026-03-09 01:08:56] 2026-03-09 00:07:58,950 | INFO     | [job] retrieve thread has finished
[2026-03-09 01:08:56] 2026-03-09 00:07:58,950 | INFO     | [job] queue monitor thread has finished
[2026-03-09 01:08:56] 2026-03-09 00:07:58,951 | INFO     | [job] job monitor thread has finished
[2026-03-09 01:08:56] 2026-03-09 00:07:59,044 | INFO     | [job] control thread has finished
[2026-03-09 01:08:56] 2026-03-09 00:07:59,147 | INFO     | all payload control threads have been joined
[2026-03-09 01:08:56] 2026-03-09 00:07:59,239 | INFO     | [payload] execute_payloads thread has finished
[2026-03-09 01:08:56] 2026-03-09 00:07:59,345 | INFO     | [data] control thread has finished
[2026-03-09 01:08:56] 2026-03-09 00:07:59,440 | INFO     | [payload] failed_post thread has finished
[2026-03-09 01:08:56] 2026-03-09 00:07:59,634 | INFO     | [job] validate thread has finished
[2026-03-09 01:08:56] 2026-03-09 00:07:59,646 | INFO     | [job] create_data_payload thread has finished
[2026-03-09 01:08:56] 2026-03-09 00:07:59,764 | INFO     | [payload] validate_pre thread has finished
[2026-03-09 01:08:56] 2026-03-09 00:07:59,876 | INFO     | [data] copytool_in thread has finished
[2026-03-09 01:08:56] 2026-03-09 00:07:59,957 | INFO     | [payload] validate_post thread has finished
[2026-03-09 01:08:56] 2026-03-09 00:08:00,153 | INFO     | [payload] control thread has finished
[2026-03-09 01:08:56] 2026-03-09 00:08:00,209 | INFO     | [data] copytool_out thread has finished
[2026-03-09 01:08:56] 2026-03-09 00:08:01,951 | INFO     | [data] queue_monitor thread has finished
[2026-03-09 01:08:56] 2026-03-09 00:08:08,335 | INFO     | job.realtimelogging is not enabled
[2026-03-09 01:08:56] 2026-03-09 00:08:09,341 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-09 01:08:56] 2026-03-09 00:08:28,302 | INFO     | PID=1344341 has CPU usage=1.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-03-09 01:08:56] 2026-03-09 00:08:28,302 | INFO     | found 0 job(s) in 20 queues
[2026-03-09 01:08:56] 2026-03-09 00:08:28,302 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-09 01:08:56] 2026-03-09 00:08:28,302 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-09 01:08:56] 2026-03-09 00:08:51,367 | INFO     | [monitor] cgroup control has ended
[2026-03-09 01:08:56] 2026-03-09 00:08:51,598 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139928757339968)>', '<ExcThread(monitor, started 139928264492800)>']
[2026-03-09 01:08:56] 2026-03-09 00:08:52,425 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-09 01:08:56] 2026-03-09 00:08:52,426 | INFO     | [monitor] control thread has ended
[2026-03-09 01:08:56] 2026-03-09 00:08:56,621 | INFO     | all workflow threads have been joined
[2026-03-09 01:08:56] 2026-03-09 00:08:56,622 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-09 01:08:56] 2026-03-09 00:08:56,622 | INFO     | traces error code: 0
[2026-03-09 01:08:56] 2026-03-09 00:08:56,622 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-09 01:08:56] 2026-03-09 00:08:56,670 [wrapper] ==== pilot stdout END ====
[2026-03-09 01:08:56] 2026-03-09 00:08:56,673 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-09 01:08:56] 2026-03-09 00:08:56,675 [wrapper] pilotpid: 1344341
[2026-03-09 01:08:56] 2026-03-09 00:08:56,677 [wrapper] Pilot exit status: 0
[2026-03-09 01:08:56] 2026-03-09 00:08:56,685 [wrapper] pandaids: 7032959248
[2026-03-09 01:08:56] 2026-03-09 00:08:56,701 [wrapper] cleanup supervisor_pilot 1356405 1344342
[2026-03-09 01:08:56] 2026-03-09 00:08:56,703 [wrapper] Test setup, not cleaning
[2026-03-09 01:08:56] 2026-03-09 00:08:56,706 [wrapper] apfmon messages muted
[2026-03-09 01:08:56] 2026-03-09 00:08:56,708 [wrapper] ==== wrapper stdout END ====
[2026-03-09 01:08:56] 2026-03-09 00:08:56,710 [wrapper] ==== wrapper stderr END ====
[2026-03-09 01:08:56]  *** Error codes and diagnostics ***
[2026-03-09 01:08:56]     "exeErrorCode": 0,
[2026-03-09 01:08:56]     "exeErrorDiag": "",
[2026-03-09 01:08:56]     "pilotErrorCode": 0,
[2026-03-09 01:08:56]     "pilotErrorDiag": "",
[2026-03-09 01:08:56]  *** Listing of results directory ***
[2026-03-09 01:08:56] total 595008
[2026-03-09 01:08:56] -rw-r--r-- 1 boinc boinc    584627 Feb 28 11:26 pilot3.tar.gz
[2026-03-09 01:08:56] -rw-r--r-- 1 boinc boinc      5111 Feb 28 11:26 queuedata.json
[2026-03-09 01:08:56] -rwx------ 1 boinc boinc     36322 Feb 28 11:27 runpilot2-wrapper.sh
[2026-03-09 01:08:56] -rw-r--r-- 1 boinc boinc       100 Mar  8 21:16 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-09 01:08:56] -rwxr-xr-x 1 boinc boinc      7986 Mar  8 21:16 run_atlas
[2026-03-09 01:08:56] -rw-r--r-- 1 boinc boinc       105 Mar  8 21:16 job.xml
[2026-03-09 01:08:56] -rw-r--r-- 2 boinc boinc 287710405 Mar  8 21:16 EVNT.48448705._000003.pool.root.1
[2026-03-09 01:08:56] -rw-r--r-- 2 boinc boinc    597972 Mar  8 21:16 input.tar.gz
[2026-03-09 01:08:56] -rw-r--r-- 2 boinc boinc     15845 Mar  8 21:16 start_atlas.sh
[2026-03-09 01:08:56] drwxrwx--x 2 boinc boinc      4096 Mar  8 21:16 shared
[2026-03-09 01:08:56] -rw-r--r-- 1 boinc boinc         0 Mar  8 21:16 boinc_setup_complete
[2026-03-09 01:08:56] -rw-r--r-- 1 boinc boinc      6438 Mar  8 21:16 init_data.xml
[2026-03-09 01:08:56] -rw-r--r-- 1 boinc boinc         0 Mar  8 21:16 boinc_lockfile
[2026-03-09 01:08:56] -rw-r--r-- 1 boinc boinc      2613 Mar  8 21:16 pandaJob.out
[2026-03-09 01:08:56] -rw------- 1 boinc boinc    999108 Mar  8 21:16 agis_schedconf.cvmfs.json
[2026-03-09 01:08:56] -rw------- 1 boinc boinc       427 Mar  8 21:16 workernode_map.json
[2026-03-09 01:08:56] drwx------ 5 boinc boinc      4096 Mar  8 21:16 pilot3
[2026-03-09 01:08:56] -rw------- 1 boinc boinc 312998623 Mar  9 01:07 HITS.48842584._000058.pool.root.1
[2026-03-09 01:08:56] -rw-r--r-- 1 boinc boinc       531 Mar  9 01:07 boinc_task_state.xml
[2026-03-09 01:08:56] -rw------- 1 boinc boinc        95 Mar  9 01:07 pilot_heartbeat.json
[2026-03-09 01:08:56] -rw------- 1 boinc boinc      1023 Mar  9 01:07 memory_monitor_summary.json
[2026-03-09 01:08:56] -rw------- 1 boinc boinc   1511578 Mar  9 01:07 agis_ddmendpoints.agis.ALL.json
[2026-03-09 01:08:56] -rw------- 1 boinc boinc    374680 Mar  9 01:07 log.48842584._000058.job.log.tgz.1
[2026-03-09 01:08:56] -rw------- 1 boinc boinc      6311 Mar  9 01:07 heartbeat.json
[2026-03-09 01:08:56] -rw-r--r-- 1 boinc boinc      8192 Mar  9 01:08 boinc_mmap_file
[2026-03-09 01:08:56] -rw-r--r-- 1 boinc boinc        28 Mar  9 01:08 wrapper_checkpoint.txt
[2026-03-09 01:08:56] -rw------- 1 boinc boinc      4820 Mar  9 01:08 pilotlog.txt
[2026-03-09 01:08:56] -rw------- 1 boinc boinc   1956089 Mar  9 01:08 log.48842584._000058.job.log.1
[2026-03-09 01:08:56] -rw------- 1 boinc boinc       357 Mar  9 01:08 output.list
[2026-03-09 01:08:56] -rw-r--r-- 1 boinc boinc       620 Mar  9 01:08 runtime_log
[2026-03-09 01:08:56] -rw------- 1 boinc boinc   2344960 Mar  9 01:08 result.tar.gz
[2026-03-09 01:08:56] -rw-r--r-- 1 boinc boinc      8897 Mar  9 01:08 runtime_log.err
[2026-03-09 01:08:56] -rw------- 1 boinc boinc       660 Mar  9 01:08 rsHNDmViWG9n9Rq4apOajLDm4fhM0noT9bVooX4SDmQ84KDmleD8Dm.diag
[2026-03-09 01:08:56] -rw-r--r-- 1 boinc boinc     12919 Mar  9 01:08 stderr.txt
[2026-03-09 01:08:56] HITS file was successfully produced:
[2026-03-09 01:08:56] -rw------- 1 boinc boinc 312998623 Mar  9 01:07 shared/HITS.pool.root.1
[2026-03-09 01:08:56]  *** Contents of shared directory: ***
[2026-03-09 01:08:56] total 589532
[2026-03-09 01:08:56] -rw-r--r-- 2 boinc boinc 287710405 Mar  8 21:16 ATLAS.root_0
[2026-03-09 01:08:56] -rw-r--r-- 2 boinc boinc    597972 Mar  8 21:16 input.tar.gz
[2026-03-09 01:08:56] -rw-r--r-- 2 boinc boinc     15845 Mar  8 21:16 start_atlas.sh
[2026-03-09 01:08:56] -rw------- 1 boinc boinc 312998623 Mar  9 01:07 HITS.pool.root.1
[2026-03-09 01:08:56] -rw------- 1 boinc boinc   2344960 Mar  9 01:08 result.tar.gz
01:08:57 (1340299): run_atlas exited; CPU time 40870.620995
01:08:57 (1340299): called boinc_finish(0)

</stderr_txt>
]]>

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