Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
02:59:41 (3678771): wrapper (7.7.26015): starting
02:59:41 (3678771): wrapper: running run_atlas (--nthreads 4)
[2026-03-09 02:59:41] Arguments: --nthreads 4
[2026-03-09 02:59:41] Threads: 4
[2026-03-09 02:59:41] Checking for CVMFS
[2026-03-09 02:59:41] No cvmfs_config command found, will try listing directly
[2026-03-09 02:59:41] CVMFS is ok
[2026-03-09 02:59:41] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-09 02:59:41] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-09 02:59:41] Further information can be found at the LHC@home message board.
[2026-03-09 02:59:41] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-09 02:59:41] Checking for apptainer binary...
[2026-03-09 02:59:41] which: no apptainer in ((null))
[2026-03-09 02:59:41] apptainer is not installed, using version from CVMFS
[2026-03-09 02:59:41] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-09 02:59:42] WARNING: Environment variable TMPDIR already has value [/var/lib/boinc/var/slot200/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut28.grid.cesnet.cz
[2026-03-09 02:59:42] apptainer works
[2026-03-09 02:59:42] Set ATHENA_PROC_NUMBER=4
[2026-03-09 02:59:42] Set ATHENA_CORE_NUMBER=4
[2026-03-09 02:59:42] Starting ATLAS job with PandaID=7032738306
[2026-03-09 02:59:42] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc/var/slot200/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-09 05:12:14]  *** The last 200 lines of the pilot log: ***
[2026-03-09 05:12:14] 2026-03-09 04:11:08,244 | INFO     | mean y: 2324559.6744186045
[2026-03-09 05:12:14] 2026-03-09 04:11:08,244 | INFO     | intersect: -39198431255.83311
[2026-03-09 05:12:14] 2026-03-09 04:11:08,245 | INFO     | chi2: 1.1100233070190721
[2026-03-09 05:12:14] 2026-03-09 04:11:08,245 | INFO     | sum of square deviations: 591173875.0
[2026-03-09 05:12:14] 2026-03-09 04:11:08,245 | INFO     | sum of deviations: 14071602488.0
[2026-03-09 05:12:14] 2026-03-09 04:11:08,245 | INFO     | mean x: 1773025366.5
[2026-03-09 05:12:14] 2026-03-09 04:11:08,245 | INFO     | mean y: 2323238.1129032257
[2026-03-09 05:12:14] 2026-03-09 04:11:08,245 | INFO     | intersect: -42200671876.52831
[2026-03-09 05:12:14] 2026-03-09 04:11:08,245 | INFO     | chi2: 1.1110831832377919
[2026-03-09 05:12:14] 2026-03-09 04:11:08,245 | INFO     | current chi2=1.1110831832377919 (change=-0.09548233915610149 %)
[2026-03-09 05:12:14] 2026-03-09 04:11:08,245 | INFO     | right removable region: 123
[2026-03-09 05:12:14] 2026-03-09 04:11:08,245 | INFO     | sum of square deviations: 591173875.0
[2026-03-09 05:12:14] 2026-03-09 04:11:08,246 | INFO     | sum of deviations: 1835717042.0
[2026-03-09 05:12:14] 2026-03-09 04:11:08,246 | INFO     | mean x: 1773025671.5
[2026-03-09 05:12:14] 2026-03-09 04:11:08,246 | INFO     | mean y: 2350317.306451613
[2026-03-09 05:12:14] 2026-03-09 04:11:08,246 | INFO     | intersect: -5503260770.592255
[2026-03-09 05:12:14] 2026-03-09 04:11:08,246 | INFO     | chi2: 0.0007371947349521342
[2026-03-09 05:12:14] 2026-03-09 04:11:08,246 | INFO     | current chi2=0.0007371947349521342 (change=99.93358745439933 %)
[2026-03-09 05:12:14] 2026-03-09 04:11:08,246 | INFO     | sum of square deviations: 522502820.0
[2026-03-09 05:12:14] 2026-03-09 04:11:08,247 | INFO     | sum of deviations: 1247404981.999999
[2026-03-09 05:12:14] 2026-03-09 04:11:08,247 | INFO     | mean x: 1773025824.0
[2026-03-09 05:12:14] 2026-03-09 04:11:08,247 | INFO     | mean y: 2351612.8655462186
[2026-03-09 05:12:14] 2026-03-09 04:11:08,247 | INFO     | intersect: -4230508309.445023
[2026-03-09 05:12:14] 2026-03-09 04:11:08,247 | INFO     | chi2: 0.0001874355102709889
[2026-03-09 05:12:14] 2026-03-09 04:11:08,247 | INFO     | current chi2=0.0001874355102709889 (change=74.57449146280744 %)
[2026-03-09 05:12:14] 2026-03-09 04:11:08,247 | INFO     | sum of square deviations: 459366752.5
[2026-03-09 05:12:14] 2026-03-09 04:11:08,247 | INFO     | sum of deviations: 1097529476.4999998
[2026-03-09 05:12:14] 2026-03-09 04:11:08,247 | INFO     | mean x: 1773025976.5
[2026-03-09 05:12:14] 2026-03-09 04:11:08,247 | INFO     | mean y: 2351973.00877193
[2026-03-09 05:12:14] 2026-03-09 04:11:08,247 | INFO     | intersect: -4233801952.4082527
[2026-03-09 05:12:14] 2026-03-09 04:11:08,247 | INFO     | chi2: 0.00018286877754875242
[2026-03-09 05:12:14] 2026-03-09 04:11:08,247 | INFO     | current chi2=0.00018286877754875242 (change=2.436428783230051 %)
[2026-03-09 05:12:14] 2026-03-09 04:11:08,247 | INFO     | left removable region: 30
[2026-03-09 05:12:14] 2026-03-09 04:11:08,247 | INFO     | sum of square deviations: 249388862.0
[2026-03-09 05:12:14] 2026-03-09 04:11:08,248 | INFO     | sum of deviations: 433487594.0
[2026-03-09 05:12:14] 2026-03-09 04:11:08,248 | INFO     | mean x: 1773026251.0
[2026-03-09 05:12:14] 2026-03-09 04:11:08,248 | INFO     | mean y: 2353463.2688172045
[2026-03-09 05:12:14] 2026-03-09 04:11:08,248 | INFO     | intersect: -3079519870.933374
[2026-03-09 05:12:14] 2026-03-09 04:11:08,248 | INFO     | chi2: 9.172683355358404e-05
[2026-03-09 05:12:14] 2026-03-09 04:11:08,248 | INFO     | current memory leak: 1.74 B/s (using 93 data points, chi2=0.00)
[2026-03-09 05:12:14] 2026-03-09 04:11:08,248 | INFO     | could have reported an average CPU frequency of 3578 MHz (8 samples)
[2026-03-09 05:12:14] 2026-03-09 04:11:08,248 | INFO     | ..............................
[2026-03-09 05:12:14] 2026-03-09 04:11:08,248 | INFO     | . Timing measurements:
[2026-03-09 05:12:14] 2026-03-09 04:11:08,248 | INFO     | . get job = 0 s
[2026-03-09 05:12:14] 2026-03-09 04:11:08,248 | INFO     | . initial setup = 4 s
[2026-03-09 05:12:14] 2026-03-09 04:11:08,248 | INFO     | . payload setup = 5 s
[2026-03-09 05:12:14] 2026-03-09 04:11:08,248 | INFO     | . stage-in = 0 s
[2026-03-09 05:12:14] 2026-03-09 04:11:08,248 | INFO     | . payload execution = 7851 s
[2026-03-09 05:12:14] 2026-03-09 04:11:08,248 | INFO     | . stage-out = 0 s
[2026-03-09 05:12:14] 2026-03-09 04:11:08,248 | INFO     | . log creation = 0 s
[2026-03-09 05:12:14] 2026-03-09 04:11:08,248 | INFO     | ..............................
[2026-03-09 05:12:14] 2026-03-09 04:11:08,299 | INFO     | 
[2026-03-09 05:12:14] 2026-03-09 04:11:08,299 | INFO     | job summary report
[2026-03-09 05:12:14] 2026-03-09 04:11:08,299 | INFO     | --------------------------------------------------
[2026-03-09 05:12:14] 2026-03-09 04:11:08,299 | INFO     | PanDA job id: 7032738306
[2026-03-09 05:12:14] 2026-03-09 04:11:08,299 | INFO     | task id: 48843073
[2026-03-09 05:12:14] 2026-03-09 04:11:08,299 | INFO     | errors: (none)
[2026-03-09 05:12:14] 2026-03-09 04:11:08,299 | INFO     | status: LOG_TRANSFER = DONE 
[2026-03-09 05:12:14] 2026-03-09 04:11:08,299 | INFO     | pilot state: finished 
[2026-03-09 05:12:14] 2026-03-09 04:11:08,299 | INFO     | transexitcode: 0
[2026-03-09 05:12:14] 2026-03-09 04:11:08,299 | INFO     | exeerrorcode: 0
[2026-03-09 05:12:14] 2026-03-09 04:11:08,299 | INFO     | exeerrordiag: 
[2026-03-09 05:12:14] 2026-03-09 04:11:08,299 | INFO     | exitcode: 0
[2026-03-09 05:12:14] 2026-03-09 04:11:08,299 | INFO     | exitmsg: OK
[2026-03-09 05:12:14] 2026-03-09 04:11:08,299 | INFO     | cpuconsumptiontime: 30367 s
[2026-03-09 05:12:14] 2026-03-09 04:11:08,299 | INFO     | nevents: 400
[2026-03-09 05:12:14] 2026-03-09 04:11:08,299 | INFO     | neventsw: 0
[2026-03-09 05:12:14] 2026-03-09 04:11:08,299 | INFO     | pid: 3701162
[2026-03-09 05:12:14] 2026-03-09 04:11:08,299 | INFO     | pgrp: 3701162
[2026-03-09 05:12:14] 2026-03-09 04:11:08,299 | INFO     | corecount: 4
[2026-03-09 05:12:14] 2026-03-09 04:11:08,299 | INFO     | event service: False
[2026-03-09 05:12:14] 2026-03-09 04:11:08,299 | INFO     | sizes: {0: 2279890, 1: 2280351, 11: 2280351, 7860: 2308037, 7862: 2317059, 7863: 2317437}
[2026-03-09 05:12:14] 2026-03-09 04:11:08,299 | INFO     | --------------------------------------------------
[2026-03-09 05:12:14] 2026-03-09 04:11:08,299 | INFO     | 
[2026-03-09 05:12:14] 2026-03-09 04:11:08,299 | INFO     | executing command: ls -lF /var/lib/boinc/var/slot200/slots/0
[2026-03-09 05:12:14] 2026-03-09 04:11:08,318 | INFO     | queue jobs had 0 job(s) [purged]
[2026-03-09 05:12:14] 2026-03-09 04:11:08,319 | INFO     | queue payloads had 0 job(s) [purged]
[2026-03-09 05:12:14] 2026-03-09 04:11:08,319 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-09 05:12:14] 2026-03-09 04:11:08,319 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-09 05:12:14] 2026-03-09 04:11:08,319 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-09 05:12:14] 2026-03-09 04:11:08,319 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-09 05:12:14] 2026-03-09 04:11:08,319 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-09 05:12:14] 2026-03-09 04:11:08,319 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-09 05:12:14] 2026-03-09 04:11:08,319 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-09 05:12:14] 2026-03-09 04:11:08,319 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-09 05:12:14] 2026-03-09 04:11:08,319 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-09 05:12:14] 2026-03-09 04:11:08,319 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-09 05:12:14] 2026-03-09 04:11:08,319 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-09 05:12:14] 2026-03-09 04:11:08,319 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-09 05:12:14] 2026-03-09 04:11:08,319 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-09 05:12:14] 2026-03-09 04:11:08,319 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-09 05:12:14] 2026-03-09 04:11:08,319 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-09 05:12:14] 2026-03-09 04:11:08,319 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-09 05:12:14] 2026-03-09 04:11:08,319 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-09 05:12:14] 2026-03-09 04:11:08,319 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-09 05:12:14] 2026-03-09 04:11:08,319 | INFO     | job 7032738306 has completed (purged errors)
[2026-03-09 05:12:14] 2026-03-09 04:11:08,319 | INFO     | overall cleanup function is called
[2026-03-09 05:12:14] 2026-03-09 04:11:09,326 | INFO     | --- collectZombieJob: --- 10, [3701162]
[2026-03-09 05:12:14] 2026-03-09 04:11:09,327 | INFO     | zombie collector waiting for pid 3701162
[2026-03-09 05:12:14] 2026-03-09 04:11:09,327 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-09 05:12:14] 2026-03-09 04:11:09,327 | INFO     | collected zombie processes
[2026-03-09 05:12:14] 2026-03-09 04:11:09,327 | INFO     | will attempt to kill all subprocesses of pid=3701162
[2026-03-09 05:12:14] 2026-03-09 04:11:09,806 | INFO     | process IDs to be killed: [3701162] (in reverse order)
[2026-03-09 05:12:14] 2026-03-09 04:11:10,023 | WARNING  | found no corresponding commands to process id(s)
[2026-03-09 05:12:14] 2026-03-09 04:11:10,024 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-09 05:12:14] 2026-03-09 04:11:10,054 | INFO     | did not find any defunct processes belonging to 3701162
[2026-03-09 05:12:14] 2026-03-09 04:11:10,082 | INFO     | did not find any defunct processes belonging to 3701162
[2026-03-09 05:12:14] 2026-03-09 04:11:10,083 | INFO     | ready for new job
[2026-03-09 05:12:14] 2026-03-09 04:11:10,083 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-09 05:12:14] 2026-03-09 04:11:10,084 | INFO     | **************************************
[2026-03-09 05:12:14] 2026-03-09 04:11:10,084 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-03-09 05:12:14] 2026-03-09 04:11:10,084 | INFO     | **************************************
[2026-03-09 05:12:14] 2026-03-09 04:11:10,084 | INFO     | 
[2026-03-09 05:12:14] 2026-03-09 04:11:10,090 | INFO     | architecture information:
[2026-03-09 05:12:14] 2026-03-09 04:11:10,090 | INFO     | executing command: cat /etc/os-release
[2026-03-09 05:12:14] 2026-03-09 04:11:10,101 | INFO     | cat /etc/os-release:
[2026-03-09 05:12:14] NAME="CentOS Linux"
[2026-03-09 05:12:14] VERSION="7 (Core)"
[2026-03-09 05:12:14] ID="centos"
[2026-03-09 05:12:14] ID_LIKE="rhel fedora"
[2026-03-09 05:12:14] VERSION_ID="7"
[2026-03-09 05:12:14] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-09 05:12:14] ANSI_COLOR="0;31"
[2026-03-09 05:12:14] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-09 05:12:14] HOME_URL="https://www.centos.org/"
[2026-03-09 05:12:14] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-09 05:12:14] 
[2026-03-09 05:12:14] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-09 05:12:14] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-09 05:12:14] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-09 05:12:14] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-09 05:12:14] 
[2026-03-09 05:12:14] 2026-03-09 04:11:10,101 | INFO     | **************************************
[2026-03-09 05:12:14] 2026-03-09 04:11:10,603 | INFO     | executing command: df -mP /var/lib/boinc/var/slot200/slots/0
[2026-03-09 05:12:14] 2026-03-09 04:11:10,614 | INFO     | sufficient remaining disk space (20874002432 B)
[2026-03-09 05:12:14] 2026-03-09 04:11:10,615 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-09 05:12:14] 2026-03-09 04:11:10,615 | INFO     | current server update state: UPDATING_FINAL
[2026-03-09 05:12:14] 2026-03-09 04:11:10,615 | INFO     | update_server=False
[2026-03-09 05:12:14] 2026-03-09 04:11:10,615 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-09 05:12:14] 2026-03-09 04:11:10,615 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-09 05:12:14] 2026-03-09 04:11:10,615 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-09 05:12:14] 2026-03-09 04:11:11,057 | INFO     | all job control threads have been joined
[2026-03-09 05:12:14] 2026-03-09 04:11:11,249 | INFO     | all payload control threads have been joined
[2026-03-09 05:12:14] 2026-03-09 04:11:11,249 | INFO     | all data control threads have been joined
[2026-03-09 05:12:14] 2026-03-09 04:11:11,493 | WARNING  | process 3701162 can no longer be monitored (due to stat problems) - aborting
[2026-03-09 05:12:14] 2026-03-09 04:11:11,619 | INFO     | [job] retrieve thread has finished
[2026-03-09 05:12:14] 2026-03-09 04:11:11,851 | INFO     | using path: /var/lib/boinc/var/slot200/slots/0/memory_monitor_summary.json (trf name=prmon)
[2026-03-09 05:12:14] 2026-03-09 04:11:11,851 | INFO     | using path: /var/lib/boinc/var/slot200/slots/0/memory_monitor_summary.json (trf name=prmon)
[2026-03-09 05:12:14] 2026-03-09 04:11:11,851 | WARNING  | memory limits not set in config, using defaults: 'NoneType' object has no attribute 'get'
[2026-03-09 05:12:14] 2026-03-09 04:11:11,852 | WARNING  | maxPSS not found in memory monitor output
[2026-03-09 05:12:14] 2026-03-09 04:11:11,852 | INFO     | skipping file size check of payload stdout file (/var/lib/boinc/var/slot200/slots/0/PanDA_Pilot-7032738306/payload.stdout) since it has not been created yet
[2026-03-09 05:12:14] 2026-03-09 04:11:11,852 | INFO     | executing command: df -mP /var/lib/boinc/var/slot200/slots/0
[2026-03-09 05:12:14] 2026-03-09 04:11:11,867 | INFO     | sufficient remaining disk space (20874002432 B)
[2026-03-09 05:12:14] 2026-03-09 04:11:11,868 | WARNING  | skipping size check of workdir since it has not been created yet
[2026-03-09 05:12:14] 2026-03-09 04:11:11,868 | INFO     | output file size check: skipping output file /var/lib/boinc/var/slot200/slots/0/PanDA_Pilot-7032738306/HITS.48843073._000035.pool.root.1 since it does not exist
[2026-03-09 05:12:14] 2026-03-09 04:11:12,062 | INFO     | [job] control thread has finished
[2026-03-09 05:12:14] 2026-03-09 04:11:12,131 | INFO     | [payload] execute_payloads thread has finished
[2026-03-09 05:12:14] 2026-03-09 04:11:12,245 | INFO     | [payload] validate_pre thread has finished
[2026-03-09 05:12:14] 2026-03-09 04:11:12,255 | INFO     | [payload] control thread has finished
[2026-03-09 05:12:14] 2026-03-09 04:11:12,256 | INFO     | [data] control thread has finished
[2026-03-09 05:12:14] 2026-03-09 04:11:12,325 | INFO     | number of running child processes to parent process 3701162: 1
[2026-03-09 05:12:14] 2026-03-09 04:11:12,325 | INFO     | maximum number of monitored processes: 6
[2026-03-09 05:12:14] 2026-03-09 04:11:12,325 | INFO     | aborting job monitoring since job object (job id=7032738306) has expired
[2026-03-09 05:12:14] 2026-03-09 04:11:12,325 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-09 05:12:14] 2026-03-09 04:11:12,325 | INFO     | will abort loop
[2026-03-09 05:12:14] 2026-03-09 04:11:12,402 | INFO     | [job] create_data_payload thread has finished
[2026-03-09 05:12:14] 2026-03-09 04:11:12,410 | INFO     | [job] validate thread has finished
[2026-03-09 05:12:14] 2026-03-09 04:11:12,584 | INFO     | [payload] validate_post thread has finished
[2026-03-09 05:12:14] 2026-03-09 04:11:12,621 | INFO     | [data] copytool_out thread has finished
[2026-03-09 05:12:14] 2026-03-09 04:11:12,691 | INFO     | [data] copytool_in thread has finished
[2026-03-09 05:12:14] 2026-03-09 04:11:12,889 | INFO     | [payload] failed_post thread has finished
[2026-03-09 05:12:14] 2026-03-09 04:11:13,308 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-09 05:12:14] 2026-03-09 04:11:13,331 | INFO     | [job] job monitor thread has finished
[2026-03-09 05:12:14] 2026-03-09 04:11:14,313 | INFO     | [job] queue monitor thread has finished
[2026-03-09 05:12:14] 2026-03-09 04:11:14,621 | INFO     | [data] queue_monitor thread has finished
[2026-03-09 05:12:14] 2026-03-09 04:11:21,369 | INFO     | job.realtimelogging is not enabled
[2026-03-09 05:12:14] 2026-03-09 04:11:22,374 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-09 05:12:14] 2026-03-09 04:11:41,359 | INFO     | PID=3686654 has CPU usage=8.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-03-09 05:12:14] 2026-03-09 04:11:41,359 | INFO     | .. there are 45 such processes running
[2026-03-09 05:12:14] 2026-03-09 04:11:41,360 | INFO     | found 0 job(s) in 20 queues
[2026-03-09 05:12:14] 2026-03-09 04:11:41,360 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-09 05:12:14] 2026-03-09 04:11:41,360 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-09 05:12:14] 2026-03-09 04:12:07,054 | INFO     | [monitor] cgroup control has ended
[2026-03-09 05:12:14] 2026-03-09 04:12:08,903 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23077013292864)>', '<ExcThread(monitor, started 23076770420480)>']
[2026-03-09 05:12:14] 2026-03-09 04:12:09,500 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-09 05:12:14] 2026-03-09 04:12:09,500 | INFO     | [monitor] control thread has ended
[2026-03-09 05:12:14] 2026-03-09 04:12:13,929 | INFO     | all workflow threads have been joined
[2026-03-09 05:12:14] 2026-03-09 04:12:13,932 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-09 05:12:14] 2026-03-09 04:12:13,932 | INFO     | traces error code: 0
[2026-03-09 05:12:14] 2026-03-09 04:12:13,932 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-09 05:12:14] 2026-03-09 04:12:14,070 [wrapper] ==== pilot stdout END ====
[2026-03-09 05:12:14] 2026-03-09 04:12:14,072 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-09 05:12:14] 2026-03-09 04:12:14,074 [wrapper] pilotpid: 3686654
[2026-03-09 05:12:14] 2026-03-09 04:12:14,076 [wrapper] Pilot exit status: 0
[2026-03-09 05:12:14] 2026-03-09 04:12:14,084 [wrapper] pandaids: 7032738306
[2026-03-09 05:12:14] 2026-03-09 04:12:14,214 [wrapper] cleanup supervisor_pilot  533278 3686655
[2026-03-09 05:12:14] 2026-03-09 04:12:14,216 [wrapper] Test setup, not cleaning
[2026-03-09 05:12:14] 2026-03-09 04:12:14,218 [wrapper] apfmon messages muted
[2026-03-09 05:12:14] 2026-03-09 04:12:14,220 [wrapper] ==== wrapper stdout END ====
[2026-03-09 05:12:14] 2026-03-09 04:12:14,223 [wrapper] ==== wrapper stderr END ====
[2026-03-09 05:12:14]  *** Error codes and diagnostics ***
[2026-03-09 05:12:14]     "exeErrorCode": 0,
[2026-03-09 05:12:14]     "exeErrorDiag": "",
[2026-03-09 05:12:14]     "pilotErrorCode": 0,
[2026-03-09 05:12:14]     "pilotErrorDiag": "",
[2026-03-09 05:12:14]  *** Listing of results directory ***
[2026-03-09 05:12:14] total 529956
[2026-03-09 05:12:14] -rw-r--r--. 1 boinc boinc    584627 Feb 28 06:38 pilot3.tar.gz
[2026-03-09 05:12:14] -rw-r--r--. 1 boinc boinc      5111 Feb 28 06:40 queuedata.json
[2026-03-09 05:12:14] -rwx------. 1 boinc boinc     36322 Feb 28 06:40 runpilot2-wrapper.sh
[2026-03-09 05:12:14] -rw-r--r--. 1 boinc boinc       100 Mar  9 02:59 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-09 05:12:14] -rwxr-xr-x. 1 boinc boinc      7986 Mar  9 02:59 run_atlas
[2026-03-09 05:12:14] -rw-r--r--. 1 boinc boinc       105 Mar  9 02:59 job.xml
[2026-03-09 05:12:14] -rw-r--r--. 1 boinc boinc      6707 Mar  9 02:59 init_data.xml
[2026-03-09 05:12:14] -rw-r--r--. 2 boinc boinc 289504179 Mar  9 02:59 EVNT.48450091._000005.pool.root.1
[2026-03-09 05:12:14] -rw-r--r--. 2 boinc boinc     15845 Mar  9 02:59 start_atlas.sh
[2026-03-09 05:12:14] drwxrwx--x. 2 boinc boinc      4096 Mar  9 02:59 shared
[2026-03-09 05:12:14] -rw-r--r--. 2 boinc boinc    597976 Mar  9 02:59 input.tar.gz
[2026-03-09 05:12:14] -rw-r--r--. 1 boinc boinc         0 Mar  9 02:59 boinc_lockfile
[2026-03-09 05:12:14] -rw-r--r--. 1 boinc boinc      2624 Mar  9 02:59 pandaJob.out
[2026-03-09 05:12:14] -rw-------. 1 boinc boinc    999108 Mar  9 02:59 agis_schedconf.cvmfs.json
[2026-03-09 05:12:14] -rw-------. 1 boinc boinc   1511578 Mar  9 02:59 agis_ddmendpoints.agis.ALL.json
[2026-03-09 05:12:14] -rw-------. 1 boinc boinc       444 Mar  9 02:59 workernode_map.json
[2026-03-09 05:12:14] drwx------. 5 boinc boinc      4096 Mar  9 02:59 pilot3
[2026-03-09 05:12:14] -rw-------. 1 boinc boinc 246373697 Mar  9 05:10 HITS.48843073._000035.pool.root.1
[2026-03-09 05:12:14] -rw-r--r--. 1 boinc boinc       529 Mar  9 05:10 boinc_task_state.xml
[2026-03-09 05:12:14] -rw-------. 1 boinc boinc      1033 Mar  9 05:11 memory_monitor_summary.json
[2026-03-09 05:12:14] -rw-------. 1 boinc boinc    307969 Mar  9 05:11 log.48843073._000035.job.log.tgz.1
[2026-03-09 05:12:14] -rw-------. 1 boinc boinc      6345 Mar  9 05:11 heartbeat.json
[2026-03-09 05:12:14] -rw-------. 1 boinc boinc        95 Mar  9 05:11 pilot_heartbeat.json
[2026-03-09 05:12:14] -rw-r--r--. 1 boinc boinc      8192 Mar  9 05:11 boinc_mmap_file
[2026-03-09 05:12:14] -rw-r--r--. 1 boinc boinc        27 Mar  9 05:11 wrapper_checkpoint.txt
[2026-03-09 05:12:14] -rw-------. 1 boinc boinc      6447 Mar  9 05:12 pilotlog.txt
[2026-03-09 05:12:14] -rw-------. 1 boinc boinc   1125097 Mar  9 05:12 log.48843073._000035.job.log.1
[2026-03-09 05:12:14] -rw-------. 1 boinc boinc       357 Mar  9 05:12 output.list
[2026-03-09 05:12:14] -rw-r--r--. 1 boinc boinc       620 Mar  9 05:12 runtime_log
[2026-03-09 05:12:14] -rw-------. 1 boinc boinc   1454080 Mar  9 05:12 result.tar.gz
[2026-03-09 05:12:14] -rw-r--r--. 1 boinc boinc      9221 Mar  9 05:12 runtime_log.err
[2026-03-09 05:12:14] -rw-------. 1 boinc boinc       663 Mar  9 05:12 ol1NDmoESG9n9Rq4apOajLDm4fhM0noT9bVooX4SDmBh4KDmJ64CBn.diag
[2026-03-09 05:12:14] -rw-r--r--. 1 boinc boinc     21278 Mar  9 05:12 stderr.txt
[2026-03-09 05:12:14] HITS file was successfully produced:
[2026-03-09 05:12:14] -rw-------. 1 boinc boinc 246373697 Mar  9 05:10 shared/HITS.pool.root.1
[2026-03-09 05:12:14]  *** Contents of shared directory: ***
[2026-03-09 05:12:14] total 525348
[2026-03-09 05:12:14] -rw-r--r--. 2 boinc boinc 289504179 Mar  9 02:59 ATLAS.root_0
[2026-03-09 05:12:14] -rw-r--r--. 2 boinc boinc     15845 Mar  9 02:59 start_atlas.sh
[2026-03-09 05:12:14] -rw-r--r--. 2 boinc boinc    597976 Mar  9 02:59 input.tar.gz
[2026-03-09 05:12:14] -rw-------. 1 boinc boinc 246373697 Mar  9 05:10 HITS.pool.root.1
[2026-03-09 05:12:14] -rw-------. 1 boinc boinc   1454080 Mar  9 05:12 result.tar.gz
05:12:16 (3678771): run_atlas exited; CPU time 30743.524559
05:12:16 (3678771): called boinc_finish(0)

</stderr_txt>
]]>

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