Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
01:06:43 (13776): wrapper (7.7.26015): starting
01:06:43 (13776): wrapper: running run_atlas (--nthreads 8)
[2026-03-09 01:06:43] Arguments: --nthreads 8
[2026-03-09 01:06:43] Threads: 8
[2026-03-09 01:06:43] Checking for CVMFS
[2026-03-09 01:06:44] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-09 01:06:45] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-09 01:06:45] Running cvmfs_config stat atlas.cern.ch
[2026-03-09 01:06:46] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-09 01:06:46] 2.11.2.0 820 119632 136868 157058 0 93 13163196 25165825 1081 130560 161 59290431 99.853 36057506 1095 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2026-03-09 01:06:46] CVMFS is ok
[2026-03-09 01:06:46] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-09 01:06:46] Checking for apptainer binary...
[2026-03-09 01:06:46] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-09 01:06:46] Running /usr/bin/apptainer --version
[2026-03-09 01:06:46] apptainer version 1.3.2-1.el7
[2026-03-09 01:06:46] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-09 01:07:20] cg-vwn494.simple-grid.lan
[2026-03-09 01:07:20] apptainer works
[2026-03-09 01:07:20] Set ATHENA_PROC_NUMBER=8
[2026-03-09 01:07:20] Set ATHENA_CORE_NUMBER=8
[2026-03-09 01:07:20] Starting ATLAS job with PandaID=7045949658
[2026-03-09 01:07:20] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/5 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-09 03:56:36]  *** The last 200 lines of the pilot log: ***
[2026-03-09 03:56:36] 2026-03-09 02:55:50,903 | INFO     | total number of processed events: 400 (read)
[2026-03-09 03:56:36] 2026-03-09 02:55:50,905 | INFO     | using path: /var/lib/boinc/slots/5/PanDA_Pilot-7045949658/memory_monitor_summary.json (trf name=prmon)
[2026-03-09 03:56:36] 2026-03-09 02:55:50,906 | INFO     | extracted standard info from prmon json
[2026-03-09 03:56:36] 2026-03-09 02:55:50,906 | INFO     | extracted standard memory fields from prmon json
[2026-03-09 03:56:36] 2026-03-09 02:55:50,906 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-03-09 03:56:36] 2026-03-09 02:55:50,907 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-03-09 03:56:36] 2026-03-09 02:55:50,907 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-03-09 03:56:36] 2026-03-09 02:55:50,910 | INFO     | fitting pss+swap vs Time
[2026-03-09 03:56:36] 2026-03-09 02:55:50,910 | INFO     | sum of square deviations: 1154663510.0
[2026-03-09 03:56:36] 2026-03-09 02:55:50,911 | INFO     | sum of deviations: 51330117129.99999
[2026-03-09 03:56:36] 2026-03-09 02:55:50,911 | INFO     | mean x: 1773020236.0
[2026-03-09 03:56:36] 2026-03-09 02:55:50,912 | INFO     | mean y: 2450570.812903226
[2026-03-09 03:56:36] 2026-03-09 02:55:50,912 | INFO     | intersect: -78816474249.75256
[2026-03-09 03:56:36] 2026-03-09 02:55:50,912 | INFO     | chi2: 8.535368102325338
[2026-03-09 03:56:36] 2026-03-09 02:55:50,912 | INFO     | sum of square deviations: 1046484737.5
[2026-03-09 03:56:36] 2026-03-09 02:55:50,913 | INFO     | sum of deviations: 60192909304.99997
[2026-03-09 03:56:36] 2026-03-09 02:55:50,913 | INFO     | mean x: 1773020083.5
[2026-03-09 03:56:36] 2026-03-09 02:55:50,913 | INFO     | mean y: 2462685.9066666667
[2026-03-09 03:56:36] 2026-03-09 02:55:50,914 | INFO     | intersect: -101980139886.02905
[2026-03-09 03:56:36] 2026-03-09 02:55:50,914 | INFO     | chi2: 7.877555114164277
[2026-03-09 03:56:36] 2026-03-09 02:55:50,914 | INFO     | current chi2=7.877555114164277 (change=7.706908246661895 %)
[2026-03-09 03:56:36] 2026-03-09 02:55:50,914 | INFO     | right removable region: 149
[2026-03-09 03:56:36] 2026-03-09 02:55:50,914 | INFO     | sum of square deviations: 1046484737.5
[2026-03-09 03:56:36] 2026-03-09 02:55:50,915 | INFO     | sum of deviations: -2197397388.000003
[2026-03-09 03:56:36] 2026-03-09 02:55:50,915 | INFO     | mean x: 1773020388.5
[2026-03-09 03:56:36] 2026-03-09 02:55:50,916 | INFO     | mean y: 2525950.9066666667
[2026-03-09 03:56:36] 2026-03-09 02:55:50,916 | INFO     | intersect: 3725495078.834966
[2026-03-09 03:56:36] 2026-03-09 02:55:50,916 | INFO     | chi2: 3.311629584558119
[2026-03-09 03:56:36] 2026-03-09 02:55:50,916 | INFO     | current chi2=3.311629584558119 (change=61.20109238574124 %)
[2026-03-09 03:56:36] 2026-03-09 02:55:50,916 | INFO     | sum of square deviations: 945282840.0
[2026-03-09 03:56:36] 2026-03-09 02:55:50,917 | INFO     | sum of deviations: -37526778184.99997
[2026-03-09 03:56:36] 2026-03-09 02:55:50,917 | INFO     | mean x: 1773020541.0
[2026-03-09 03:56:36] 2026-03-09 02:55:50,917 | INFO     | mean y: 2578895.3586206897
[2026-03-09 03:56:36] 2026-03-09 02:55:50,918 | INFO     | intersect: 70389711448.7811
[2026-03-09 03:56:36] 2026-03-09 02:55:50,918 | INFO     | chi2: 1.0079713286569651
[2026-03-09 03:56:36] 2026-03-09 02:55:50,918 | INFO     | current chi2=1.0079713286569651 (change=69.56267894944955 %)
[2026-03-09 03:56:36] 2026-03-09 02:55:50,918 | INFO     | sum of square deviations: 850825255.0
[2026-03-09 03:56:36] 2026-03-09 02:55:50,919 | INFO     | sum of deviations: -40582566444.5
[2026-03-09 03:56:36] 2026-03-09 02:55:50,919 | INFO     | mean x: 1773020693.5
[2026-03-09 03:56:36] 2026-03-09 02:55:50,919 | INFO     | mean y: 2583678.6214285716
[2026-03-09 03:56:36] 2026-03-09 02:55:50,919 | INFO     | intersect: 84571923479.7034
[2026-03-09 03:56:36] 2026-03-09 02:55:50,920 | INFO     | chi2: 0.9176584222165749
[2026-03-09 03:56:36] 2026-03-09 02:55:50,920 | INFO     | current chi2=0.9176584222165749 (change=8.959868586810343 %)
[2026-03-09 03:56:36] 2026-03-09 02:55:50,920 | INFO     | left removable region: 30
[2026-03-09 03:56:36] 2026-03-09 02:55:50,920 | INFO     | sum of square deviations: 522502820.0
[2026-03-09 03:56:36] 2026-03-09 02:55:50,921 | INFO     | sum of deviations: -19521801939.999996
[2026-03-09 03:56:36] 2026-03-09 02:55:50,921 | INFO     | mean x: 1773020968.0
[2026-03-09 03:56:36] 2026-03-09 02:55:50,921 | INFO     | mean y: 2582145.9831932774
[2026-03-09 03:56:36] 2026-03-09 02:55:50,921 | INFO     | intersect: 66246366577.162094
[2026-03-09 03:56:36] 2026-03-09 02:55:50,921 | INFO     | chi2: 0.1129416881847047
[2026-03-09 03:56:36] 2026-03-09 02:55:50,922 | INFO     | current memory leak: -37.36 B/s (using 119 data points, chi2=0.11)
[2026-03-09 03:56:36] 2026-03-09 02:55:50,922 | INFO     | could have reported an average CPU frequency of 2249 MHz (9 samples)
[2026-03-09 03:56:36] 2026-03-09 02:55:50,922 | INFO     | ..............................
[2026-03-09 03:56:36] 2026-03-09 02:55:50,922 | INFO     | . Timing measurements:
[2026-03-09 03:56:36] 2026-03-09 02:55:50,922 | INFO     | . get job = 0 s
[2026-03-09 03:56:36] 2026-03-09 02:55:50,923 | INFO     | . initial setup = 126 s
[2026-03-09 03:56:36] 2026-03-09 02:55:50,923 | INFO     | . payload setup = 131 s
[2026-03-09 03:56:36] 2026-03-09 02:55:50,923 | INFO     | . stage-in = 0 s
[2026-03-09 03:56:36] 2026-03-09 02:55:50,923 | INFO     | . payload execution = 9546 s
[2026-03-09 03:56:36] 2026-03-09 02:55:50,923 | INFO     | . stage-out = 2 s
[2026-03-09 03:56:36] 2026-03-09 02:55:50,923 | INFO     | . log creation = 1 s
[2026-03-09 03:56:36] 2026-03-09 02:55:50,923 | INFO     | ..............................
[2026-03-09 03:56:36] 2026-03-09 02:55:51,033 | INFO     | 
[2026-03-09 03:56:36] 2026-03-09 02:55:51,033 | INFO     | job summary report
[2026-03-09 03:56:36] 2026-03-09 02:55:51,033 | INFO     | --------------------------------------------------
[2026-03-09 03:56:36] 2026-03-09 02:55:51,034 | INFO     | PanDA job id: 7045949658
[2026-03-09 03:56:36] 2026-03-09 02:55:51,034 | INFO     | task id: 48958635
[2026-03-09 03:56:36] 2026-03-09 02:55:51,034 | INFO     | errors: (none)
[2026-03-09 03:56:36] 2026-03-09 02:55:51,034 | INFO     | status: LOG_TRANSFER = DONE 
[2026-03-09 03:56:36] 2026-03-09 02:55:51,034 | INFO     | pilot state: finished 
[2026-03-09 03:56:36] 2026-03-09 02:55:51,034 | INFO     | transexitcode: 0
[2026-03-09 03:56:36] 2026-03-09 02:55:51,034 | INFO     | exeerrorcode: 0
[2026-03-09 03:56:36] 2026-03-09 02:55:51,034 | INFO     | exeerrordiag: 
[2026-03-09 03:56:36] 2026-03-09 02:55:51,034 | INFO     | exitcode: 0
[2026-03-09 03:56:36] 2026-03-09 02:55:51,034 | INFO     | exitmsg: OK
[2026-03-09 03:56:36] 2026-03-09 02:55:51,034 | INFO     | cpuconsumptiontime: 55526 s
[2026-03-09 03:56:36] 2026-03-09 02:55:51,035 | INFO     | nevents: 400
[2026-03-09 03:56:36] 2026-03-09 02:55:51,035 | INFO     | neventsw: 0
[2026-03-09 03:56:36] 2026-03-09 02:55:51,035 | INFO     | pid: 22268
[2026-03-09 03:56:36] 2026-03-09 02:55:51,035 | INFO     | pgrp: 22268
[2026-03-09 03:56:36] 2026-03-09 02:55:51,035 | INFO     | corecount: 8
[2026-03-09 03:56:36] 2026-03-09 02:55:51,035 | INFO     | event service: False
[2026-03-09 03:56:36] 2026-03-09 02:55:51,035 | INFO     | sizes: {0: 2279697, 1: 2280154, 2: 2280242, 12: 2280242, 9682: 2308812, 9686: 2317810, 9688: 2317994, 9689: 2318252}
[2026-03-09 03:56:36] 2026-03-09 02:55:51,035 | INFO     | --------------------------------------------------
[2026-03-09 03:56:36] 2026-03-09 02:55:51,035 | INFO     | 
[2026-03-09 03:56:36] 2026-03-09 02:55:51,035 | INFO     | executing command: ls -lF /var/lib/boinc/slots/5
[2026-03-09 03:56:36] 2026-03-09 02:55:51,354 | INFO     | PID=17791 has CPU usage=7.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-03-09 03:56:36] 2026-03-09 02:55:51,354 | INFO     | .. there are 2 such processes running
[2026-03-09 03:56:36] 2026-03-09 02:55:51,682 | INFO     | queue jobs had 0 job(s) [purged]
[2026-03-09 03:56:36] 2026-03-09 02:55:51,682 | INFO     | queue payloads had 0 job(s) [purged]
[2026-03-09 03:56:36] 2026-03-09 02:55:51,682 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-09 03:56:36] 2026-03-09 02:55:51,683 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-09 03:56:36] 2026-03-09 02:55:51,683 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-09 03:56:36] 2026-03-09 02:55:51,683 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-09 03:56:36] 2026-03-09 02:55:51,683 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-09 03:56:36] 2026-03-09 02:55:51,683 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-09 03:56:36] 2026-03-09 02:55:51,683 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-09 03:56:36] 2026-03-09 02:55:51,683 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-09 03:56:36] 2026-03-09 02:55:51,683 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-09 03:56:36] 2026-03-09 02:55:51,683 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-09 03:56:36] 2026-03-09 02:55:51,683 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-09 03:56:36] 2026-03-09 02:55:51,684 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-09 03:56:36] 2026-03-09 02:55:51,684 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-09 03:56:36] 2026-03-09 02:55:51,684 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-09 03:56:36] 2026-03-09 02:55:51,684 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-09 03:56:36] 2026-03-09 02:55:51,684 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-09 03:56:36] 2026-03-09 02:55:51,684 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-09 03:56:36] 2026-03-09 02:55:51,684 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-09 03:56:36] 2026-03-09 02:55:51,684 | INFO     | job 7045949658 has completed (purged errors)
[2026-03-09 03:56:36] 2026-03-09 02:55:51,684 | INFO     | overall cleanup function is called
[2026-03-09 03:56:36] 2026-03-09 02:55:52,693 | INFO     | --- collectZombieJob: --- 10, [22268]
[2026-03-09 03:56:36] 2026-03-09 02:55:52,693 | INFO     | zombie collector waiting for pid 22268
[2026-03-09 03:56:36] 2026-03-09 02:55:52,694 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-09 03:56:36] 2026-03-09 02:55:52,694 | INFO     | collected zombie processes
[2026-03-09 03:56:36] 2026-03-09 02:55:52,694 | INFO     | will attempt to kill all subprocesses of pid=22268
[2026-03-09 03:56:36] 2026-03-09 02:55:52,762 | INFO     | process IDs to be killed: [22268] (in reverse order)
[2026-03-09 03:56:36] 2026-03-09 02:55:53,836 | WARNING  | found no corresponding commands to process id(s)
[2026-03-09 03:56:36] 2026-03-09 02:55:53,836 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-09 03:56:36] 2026-03-09 02:55:53,838 | INFO     | did not find any defunct processes belonging to 22268
[2026-03-09 03:56:36] 2026-03-09 02:55:53,840 | INFO     | did not find any defunct processes belonging to 22268
[2026-03-09 03:56:36] 2026-03-09 02:55:53,840 | INFO     | ready for new job
[2026-03-09 03:56:36] 2026-03-09 02:55:53,840 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-09 03:56:36] 2026-03-09 02:55:53,842 | INFO     | **************************************
[2026-03-09 03:56:36] 2026-03-09 02:55:53,842 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-03-09 03:56:36] 2026-03-09 02:55:53,842 | INFO     | **************************************
[2026-03-09 03:56:36] 2026-03-09 02:55:53,842 | INFO     | 
[2026-03-09 03:56:36] 2026-03-09 02:55:53,843 | INFO     | pilot is running in a VM
[2026-03-09 03:56:36] 2026-03-09 02:55:53,843 | INFO     | architecture information:
[2026-03-09 03:56:36] 2026-03-09 02:55:53,854 | INFO     | executing command: cat /etc/os-release
[2026-03-09 03:56:36] 2026-03-09 02:55:54,134 | INFO     | cat /etc/os-release:
[2026-03-09 03:56:36] NAME="CentOS Linux"
[2026-03-09 03:56:36] VERSION="7 (Core)"
[2026-03-09 03:56:36] ID="centos"
[2026-03-09 03:56:36] ID_LIKE="rhel fedora"
[2026-03-09 03:56:36] VERSION_ID="7"
[2026-03-09 03:56:36] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-09 03:56:36] ANSI_COLOR="0;31"
[2026-03-09 03:56:36] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-09 03:56:36] HOME_URL="https://www.centos.org/"
[2026-03-09 03:56:36] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-09 03:56:36] 
[2026-03-09 03:56:36] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-09 03:56:36] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-09 03:56:36] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-09 03:56:36] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-09 03:56:36] 
[2026-03-09 03:56:36] 2026-03-09 02:55:54,134 | INFO     | **************************************
[2026-03-09 03:56:36] 2026-03-09 02:55:54,637 | INFO     | executing command: df -mP /var/lib/boinc/slots/5
[2026-03-09 03:56:36] 2026-03-09 02:55:54,855 | INFO     | sufficient remaining disk space (497474863104 B)
[2026-03-09 03:56:36] 2026-03-09 02:55:54,855 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-09 03:56:36] 2026-03-09 02:55:54,856 | INFO     | current server update state: UPDATING_FINAL
[2026-03-09 03:56:36] 2026-03-09 02:55:54,856 | INFO     | update_server=False
[2026-03-09 03:56:36] 2026-03-09 02:55:54,856 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-09 03:56:36] 2026-03-09 02:55:54,856 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-09 03:56:36] 2026-03-09 02:55:55,041 | INFO     | all data control threads have been joined
[2026-03-09 03:56:36] 2026-03-09 02:55:55,401 | INFO     | all payload control threads have been joined
[2026-03-09 03:56:36] 2026-03-09 02:55:55,630 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-09 03:56:36] 2026-03-09 02:55:55,631 | INFO     | aborting loop
[2026-03-09 03:56:36] 2026-03-09 02:55:55,861 | INFO     | [job] retrieve thread has finished
[2026-03-09 03:56:36] 2026-03-09 02:55:55,879 | INFO     | [payload] execute_payloads thread has finished
[2026-03-09 03:56:36] 2026-03-09 02:55:56,046 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-09 03:56:36] 2026-03-09 02:55:56,047 | INFO     | [data] control thread has finished
[2026-03-09 03:56:36] 2026-03-09 02:55:56,310 | INFO     | [payload] validate_pre thread has finished
[2026-03-09 03:56:36] 2026-03-09 02:55:56,337 | INFO     | [data] copytool_in thread has finished
[2026-03-09 03:56:36] 2026-03-09 02:55:56,407 | INFO     | [payload] control thread has finished
[2026-03-09 03:56:36] 2026-03-09 02:55:56,448 | INFO     | all job control threads have been joined
[2026-03-09 03:56:36] 2026-03-09 02:55:56,635 | INFO     | [job] job monitor thread has finished
[2026-03-09 03:56:36] 2026-03-09 02:55:56,772 | INFO     | [payload] validate_post thread has finished
[2026-03-09 03:56:36] 2026-03-09 02:55:56,852 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-09 03:56:36] 2026-03-09 02:55:56,863 | INFO     | [data] copytool_out thread has finished
[2026-03-09 03:56:36] 2026-03-09 02:55:56,909 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-09 03:56:36] 2026-03-09 02:55:57,052 | INFO     | [job] queue monitor thread has finished
[2026-03-09 03:56:36] 2026-03-09 02:55:57,146 | INFO     | [payload] failed_post thread has finished
[2026-03-09 03:56:36] 2026-03-09 02:55:57,273 | INFO     | [job] validate thread has finished
[2026-03-09 03:56:36] 2026-03-09 02:55:57,341 | INFO     | [job] create_data_payload thread has finished
[2026-03-09 03:56:36] 2026-03-09 02:55:57,454 | INFO     | [job] control thread has finished
[2026-03-09 03:56:36] 2026-03-09 02:56:00,918 | INFO     | [data] queue_monitor thread has finished
[2026-03-09 03:56:36] 2026-03-09 02:56:23,496 | INFO     | PID=17791 has CPU usage=0.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-03-09 03:56:36] 2026-03-09 02:56:23,497 | INFO     | .. there are 2 such processes running
[2026-03-09 03:56:36] 2026-03-09 02:56:23,497 | INFO     | found 0 job(s) in 20 queues
[2026-03-09 03:56:36] 2026-03-09 02:56:23,497 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-09 03:56:36] 2026-03-09 02:56:23,497 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-09 03:56:36] 2026-03-09 02:56:25,801 | INFO     | [monitor] cgroup control has ended
[2026-03-09 03:56:36] 2026-03-09 02:56:26,642 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139862502131520)>', '<ExcThread(monitor, started 139862204192512)>']
[2026-03-09 03:56:36] 2026-03-09 02:56:27,521 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-09 03:56:36] 2026-03-09 02:56:27,521 | INFO     | [monitor] control thread has ended
[2026-03-09 03:56:36] 2026-03-09 02:56:31,668 | INFO     | all workflow threads have been joined
[2026-03-09 03:56:36] 2026-03-09 02:56:31,668 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-09 03:56:36] 2026-03-09 02:56:31,669 | INFO     | traces error code: 0
[2026-03-09 03:56:36] 2026-03-09 02:56:31,669 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-09 03:56:36] 2026-03-09 02:56:32,099 [wrapper] ==== pilot stdout END ====
[2026-03-09 03:56:36] 2026-03-09 02:56:32,200 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-09 03:56:36] 2026-03-09 02:56:32,293 [wrapper] pilotpid: 17791
[2026-03-09 03:56:36] 2026-03-09 02:56:32,349 [wrapper] Pilot exit status: 0
[2026-03-09 03:56:36] 2026-03-09 02:56:32,754 [wrapper] pandaids: 7045949658
[2026-03-09 03:56:36] 2026-03-09 02:56:33,742 [wrapper] cleanup supervisor_pilot 11684 17792
[2026-03-09 03:56:36] 2026-03-09 02:56:33,839 [wrapper] Test setup, not cleaning
[2026-03-09 03:56:36] 2026-03-09 02:56:33,922 [wrapper] apfmon messages muted
[2026-03-09 03:56:36] 2026-03-09 02:56:33,982 [wrapper] ==== wrapper stdout END ====
[2026-03-09 03:56:36] 2026-03-09 02:56:34,074 [wrapper] ==== wrapper stderr END ====
[2026-03-09 03:56:36]  *** Error codes and diagnostics ***
[2026-03-09 03:56:36]     "exeErrorCode": 0,
[2026-03-09 03:56:36]     "exeErrorDiag": "",
[2026-03-09 03:56:36]     "pilotErrorCode": 0,
[2026-03-09 03:56:36]     "pilotErrorDiag": "",
[2026-03-09 03:56:36]  *** Listing of results directory ***
[2026-03-09 03:56:36] total 443964
[2026-03-09 03:56:36] -rwx------. 1 boinc boinc     36322 Mar  8 10:02 runpilot2-wrapper.sh
[2026-03-09 03:56:36] -rw-r--r--. 1 boinc boinc    584627 Mar  8 10:02 pilot3.tar.gz
[2026-03-09 03:56:36] -rw-r--r--. 1 boinc boinc      5111 Mar  8 10:02 queuedata.json
[2026-03-09 03:56:36] -rw-r--r--. 1 boinc boinc       100 Mar  9 01:06 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-09 03:56:36] -rwxr-xr-x. 1 boinc boinc      7986 Mar  9 01:06 run_atlas
[2026-03-09 03:56:36] -rw-r--r--. 1 boinc boinc       105 Mar  9 01:06 job.xml
[2026-03-09 03:56:36] -rw-r--r--. 1 boinc boinc      6390 Mar  9 01:06 init_data.xml
[2026-03-09 03:56:36] -rw-r--r--. 2 boinc boinc 265729861 Mar  9 01:06 EVNT.48958633._000071.pool.root.1
[2026-03-09 03:56:36] -rw-r--r--. 2 boinc boinc     15845 Mar  9 01:06 start_atlas.sh
[2026-03-09 03:56:36] drwxrwx--x. 2 boinc boinc        68 Mar  9 01:06 shared
[2026-03-09 03:56:36] -rw-r--r--. 2 boinc boinc    597936 Mar  9 01:06 input.tar.gz
[2026-03-09 03:56:36] -rw-r--r--. 1 boinc boinc         0 Mar  9 01:06 boinc_lockfile
[2026-03-09 03:56:36] -rw-r--r--. 1 boinc boinc      2526 Mar  9 01:07 pandaJob.out
[2026-03-09 03:56:36] -rw-------. 1 boinc boinc   1511578 Mar  9 01:12 agis_ddmendpoints.agis.ALL.json
[2026-03-09 03:56:36] -rw-------. 1 boinc boinc       415 Mar  9 01:14 workernode_map.json
[2026-03-09 03:56:36] -rw-------. 1 boinc boinc    999108 Mar  9 01:14 agis_schedconf.cvmfs.json
[2026-03-09 03:56:36] drwx------. 5 boinc boinc      4096 Mar  9 01:14 pilot3
[2026-03-09 03:56:36] -rw-------. 1 boinc boinc 181387032 Mar  9 03:54 HITS.48958635._001812.pool.root.1
[2026-03-09 03:56:36] -rw-r--r--. 1 boinc boinc       530 Mar  9 03:54 boinc_task_state.xml
[2026-03-09 03:56:36] -rw-------. 1 boinc boinc        95 Mar  9 03:55 pilot_heartbeat.json
[2026-03-09 03:56:36] -rw-------. 1 boinc boinc      1021 Mar  9 03:55 memory_monitor_summary.json
[2026-03-09 03:56:36] -rw-------. 1 boinc boinc    401608 Mar  9 03:55 log.48958635._001812.job.log.tgz.1
[2026-03-09 03:56:36] -rw-------. 1 boinc boinc      6326 Mar  9 03:55 heartbeat.json
[2026-03-09 03:56:36] -rw-r--r--. 1 boinc boinc      8192 Mar  9 03:56 boinc_mmap_file
[2026-03-09 03:56:36] -rw-r--r--. 1 boinc boinc        28 Mar  9 03:56 wrapper_checkpoint.txt
[2026-03-09 03:56:36] -rw-------. 1 boinc boinc      4880 Mar  9 03:56 pilotlog.txt
[2026-03-09 03:56:36] -rw-------. 1 boinc boinc   1389184 Mar  9 03:56 log.48958635._001812.job.log.1
[2026-03-09 03:56:36] -rw-------. 1 boinc boinc       357 Mar  9 03:56 output.list
[2026-03-09 03:56:36] -rw-r--r--. 1 boinc boinc       620 Mar  9 03:56 runtime_log
[2026-03-09 03:56:36] -rw-------. 1 boinc boinc   1812480 Mar  9 03:56 result.tar.gz
[2026-03-09 03:56:36] -rw-r--r--. 1 boinc boinc      8816 Mar  9 03:56 runtime_log.err
[2026-03-09 03:56:36] -rw-------. 1 boinc boinc       654 Mar  9 03:56 KiFKDmADPJ9n9Rq4apOajLDm4fhM0noT9bVooX4SDmLJWLDm3cLubm.diag
[2026-03-09 03:56:36] -rw-r--r--. 1 boinc boinc     20806 Mar  9 03:56 stderr.txt
[2026-03-09 03:56:37] HITS file was successfully produced:
[2026-03-09 03:56:37] -rw-------. 1 boinc boinc 181387032 Mar  9 03:54 shared/HITS.pool.root.1
[2026-03-09 03:56:37]  *** Contents of shared directory: ***
[2026-03-09 03:56:37] total 439012
[2026-03-09 03:56:37] -rw-r--r--. 2 boinc boinc 265729861 Mar  9 01:06 ATLAS.root_0
[2026-03-09 03:56:37] -rw-r--r--. 2 boinc boinc     15845 Mar  9 01:06 start_atlas.sh
[2026-03-09 03:56:37] -rw-r--r--. 2 boinc boinc    597936 Mar  9 01:06 input.tar.gz
[2026-03-09 03:56:37] -rw-------. 1 boinc boinc 181387032 Mar  9 03:54 HITS.pool.root.1
[2026-03-09 03:56:37] -rw-------. 1 boinc boinc   1812480 Mar  9 03:56 result.tar.gz
03:56:38 (13776): run_atlas exited; CPU time 55618.789854
03:56:38 (13776): called boinc_finish(0)

</stderr_txt>
]]>

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