Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
11:13:34 (296116): wrapper (7.7.26015): starting
11:13:34 (296116): wrapper: running run_atlas (--nthreads 4)
[2026-03-09 11:13:34] Arguments: --nthreads 4
[2026-03-09 11:13:34] Threads: 4
[2026-03-09 11:13:34] Checking for CVMFS
[2026-03-09 11:13:34] No cvmfs_config command found, will try listing directly
[2026-03-09 11:13:34] CVMFS is ok
[2026-03-09 11:13:34] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-09 11:13:34] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-09 11:13:34] Further information can be found at the LHC@home message board.
[2026-03-09 11:13:34] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-09 11:13:34] Checking for apptainer binary...
[2026-03-09 11:13:34] which: no apptainer in ((null))
[2026-03-09 11:13:34] apptainer is not installed, using version from CVMFS
[2026-03-09 11:13:34] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-09 11:13:34] WARNING: Environment variable TMPDIR already has value [/var/lib/boinc/var/slot76/slots/3/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut29.grid.cesnet.cz
[2026-03-09 11:13:34] apptainer works
[2026-03-09 11:13:34] Set ATHENA_PROC_NUMBER=4
[2026-03-09 11:13:34] Set ATHENA_CORE_NUMBER=4
[2026-03-09 11:13:34] Starting ATLAS job with PandaID=7045950487
[2026-03-09 11:13:34] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc/var/slot76/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-09 13:14:06]  *** The last 200 lines of the pilot log: ***
[2026-03-09 13:14:06] 2026-03-09 12:13:34,100 | INFO     | job 7045950487 has finished - writing final server update
[2026-03-09 13:14:06] 2026-03-09 12:13:34,100 | WARNING  | failed to read HTCondor job classAd: [Errno 2] No such file or directory: '/scratch/condor/execute/dir_4004238/.job.ad'
[2026-03-09 13:14:06] 2026-03-09 12:13:34,100 | INFO     | total number of processed events: 400 (read)
[2026-03-09 13:14:06] 2026-03-09 12:13:34,118 | INFO     | using path: /var/lib/boinc/var/slot76/slots/3/PanDA_Pilot-7045950487/memory_monitor_summary.json (trf name=prmon)
[2026-03-09 13:14:06] 2026-03-09 12:13:34,118 | INFO     | extracted standard info from prmon json
[2026-03-09 13:14:06] 2026-03-09 12:13:34,118 | INFO     | extracted standard memory fields from prmon json
[2026-03-09 13:14:06] 2026-03-09 12:13:34,118 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-03-09 13:14:06] 2026-03-09 12:13:34,118 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-03-09 13:14:06] 2026-03-09 12:13:34,118 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-03-09 13:14:06] 2026-03-09 12:13:34,120 | INFO     | fitting pss+swap vs Time
[2026-03-09 13:14:06] 2026-03-09 12:13:34,120 | INFO     | sum of square deviations: 509440249.5
[2026-03-09 13:14:06] 2026-03-09 12:13:34,120 | INFO     | sum of deviations: 8160340605.500002
[2026-03-09 13:14:06] 2026-03-09 12:13:34,120 | INFO     | mean x: 1773054815.5
[2026-03-09 13:14:06] 2026-03-09 12:13:34,120 | INFO     | mean y: 2311171.381355932
[2026-03-09 13:14:06] 2026-03-09 12:13:34,120 | INFO     | intersect: -28398921791.468716
[2026-03-09 13:14:06] 2026-03-09 12:13:34,120 | INFO     | chi2: 1.3247971816127357
[2026-03-09 13:14:06] 2026-03-09 12:13:34,120 | INFO     | sum of square deviations: 447383272.0
[2026-03-09 13:14:06] 2026-03-09 12:13:34,121 | INFO     | sum of deviations: 11481592203.0
[2026-03-09 13:14:06] 2026-03-09 12:13:34,121 | INFO     | mean x: 1773054663.0
[2026-03-09 13:14:06] 2026-03-09 12:13:34,121 | INFO     | mean y: 2319008.5221238937
[2026-03-09 13:14:06] 2026-03-09 12:13:34,121 | INFO     | intersect: -45501149422.88939
[2026-03-09 13:14:06] 2026-03-09 12:13:34,121 | INFO     | chi2: 1.1141301573778544
[2026-03-09 13:14:06] 2026-03-09 12:13:34,121 | INFO     | current chi2=1.1141301573778544 (change=15.901832156559001 %)
[2026-03-09 13:14:06] 2026-03-09 12:13:34,121 | INFO     | right removable region: 112
[2026-03-09 13:14:06] 2026-03-09 12:13:34,121 | INFO     | sum of square deviations: 447383272.0
[2026-03-09 13:14:06] 2026-03-09 12:13:34,121 | INFO     | sum of deviations: -2987967391.9999995
[2026-03-09 13:14:06] 2026-03-09 12:13:34,121 | INFO     | mean x: 1773054968.0
[2026-03-09 13:14:06] 2026-03-09 12:13:34,122 | INFO     | mean y: 2337802.646017699
[2026-03-09 13:14:06] 2026-03-09 12:13:34,122 | INFO     | intersect: 11844153892.290966
[2026-03-09 13:14:06] 2026-03-09 12:13:34,122 | INFO     | chi2: 0.21748481529138922
[2026-03-09 13:14:06] 2026-03-09 12:13:34,122 | INFO     | current chi2=0.21748481529138922 (change=83.5835388005102 %)
[2026-03-09 13:14:06] 2026-03-09 12:13:34,122 | INFO     | sum of square deviations: 390582207.0
[2026-03-09 13:14:06] 2026-03-09 12:13:34,122 | INFO     | sum of deviations: -3217822193.5
[2026-03-09 13:14:06] 2026-03-09 12:13:34,122 | INFO     | mean x: 1773055120.5
[2026-03-09 13:14:06] 2026-03-09 12:13:34,122 | INFO     | mean y: 2338408.935185185
[2026-03-09 13:14:06] 2026-03-09 12:13:34,122 | INFO     | intersect: 14609701506.363012
[2026-03-09 13:14:06] 2026-03-09 12:13:34,122 | INFO     | chi2: 0.21666331612152423
[2026-03-09 13:14:06] 2026-03-09 12:13:34,122 | INFO     | current chi2=0.21666331612152423 (change=0.37772713868061564 %)
[2026-03-09 13:14:06] 2026-03-09 12:13:34,122 | INFO     | left removable region: 20
[2026-03-09 13:14:06] 2026-03-09 12:13:34,122 | INFO     | sum of square deviations: 241429643.0
[2026-03-09 13:14:06] 2026-03-09 12:13:34,123 | INFO     | sum of deviations: 155828739.5
[2026-03-09 13:14:06] 2026-03-09 12:13:34,123 | INFO     | mean x: 1773055242.5
[2026-03-09 13:14:06] 2026-03-09 12:13:34,123 | INFO     | mean y: 2348642.7282608696
[2026-03-09 13:14:06] 2026-03-09 12:13:34,123 | INFO     | intersect: -1142055002.4473312
[2026-03-09 13:14:06] 2026-03-09 12:13:34,123 | INFO     | chi2: 6.69000914763665e-05
[2026-03-09 13:14:06] 2026-03-09 12:13:34,123 | INFO     | current memory leak: 0.65 B/s (using 92 data points, chi2=0.00)
[2026-03-09 13:14:06] 2026-03-09 12:13:34,123 | INFO     | could have reported an average CPU frequency of 3570 MHz (7 samples)
[2026-03-09 13:14:06] 2026-03-09 12:13:34,123 | INFO     | ..............................
[2026-03-09 13:14:06] 2026-03-09 12:13:34,123 | INFO     | . Timing measurements:
[2026-03-09 13:14:06] 2026-03-09 12:13:34,123 | INFO     | . get job = 0 s
[2026-03-09 13:14:06] 2026-03-09 12:13:34,123 | INFO     | . initial setup = 4 s
[2026-03-09 13:14:06] 2026-03-09 12:13:34,123 | INFO     | . payload setup = 5 s
[2026-03-09 13:14:06] 2026-03-09 12:13:34,123 | INFO     | . stage-in = 0 s
[2026-03-09 13:14:06] 2026-03-09 12:13:34,123 | INFO     | . payload execution = 7167 s
[2026-03-09 13:14:06] 2026-03-09 12:13:34,123 | INFO     | . stage-out = 0 s
[2026-03-09 13:14:06] 2026-03-09 12:13:34,123 | INFO     | . log creation = 0 s
[2026-03-09 13:14:06] 2026-03-09 12:13:34,123 | INFO     | ..............................
[2026-03-09 13:14:06] 2026-03-09 12:13:34,171 | INFO     | 
[2026-03-09 13:14:06] 2026-03-09 12:13:34,171 | INFO     | job summary report
[2026-03-09 13:14:06] 2026-03-09 12:13:34,171 | INFO     | --------------------------------------------------
[2026-03-09 13:14:06] 2026-03-09 12:13:34,171 | INFO     | PanDA job id: 7045950487
[2026-03-09 13:14:06] 2026-03-09 12:13:34,171 | INFO     | task id: 48998012
[2026-03-09 13:14:06] 2026-03-09 12:13:34,171 | INFO     | errors: (none)
[2026-03-09 13:14:06] 2026-03-09 12:13:34,171 | INFO     | status: LOG_TRANSFER = DONE 
[2026-03-09 13:14:06] 2026-03-09 12:13:34,171 | INFO     | pilot state: finished 
[2026-03-09 13:14:06] 2026-03-09 12:13:34,171 | INFO     | transexitcode: 0
[2026-03-09 13:14:06] 2026-03-09 12:13:34,171 | INFO     | exeerrorcode: 0
[2026-03-09 13:14:06] 2026-03-09 12:13:34,171 | INFO     | exeerrordiag: 
[2026-03-09 13:14:06] 2026-03-09 12:13:34,171 | INFO     | exitcode: 0
[2026-03-09 13:14:06] 2026-03-09 12:13:34,171 | INFO     | exitmsg: OK
[2026-03-09 13:14:06] 2026-03-09 12:13:34,171 | INFO     | cpuconsumptiontime: 27046 s
[2026-03-09 13:14:06] 2026-03-09 12:13:34,171 | INFO     | nevents: 400
[2026-03-09 13:14:06] 2026-03-09 12:13:34,171 | INFO     | neventsw: 0
[2026-03-09 13:14:06] 2026-03-09 12:13:34,171 | INFO     | pid: 306590
[2026-03-09 13:14:06] 2026-03-09 12:13:34,171 | INFO     | pgrp: 306590
[2026-03-09 13:14:06] 2026-03-09 12:13:34,171 | INFO     | corecount: 4
[2026-03-09 13:14:06] 2026-03-09 12:13:34,171 | INFO     | event service: False
[2026-03-09 13:14:06] 2026-03-09 12:13:34,171 | INFO     | sizes: {0: 2280274, 11: 2280274, 7176: 2307603, 7177: 2316817}
[2026-03-09 13:14:06] 2026-03-09 12:13:34,172 | INFO     | --------------------------------------------------
[2026-03-09 13:14:06] 2026-03-09 12:13:34,172 | INFO     | 
[2026-03-09 13:14:06] 2026-03-09 12:13:34,172 | INFO     | executing command: ls -lF /var/lib/boinc/var/slot76/slots/3
[2026-03-09 13:14:06] 2026-03-09 12:13:34,194 | INFO     | queue jobs had 0 job(s) [purged]
[2026-03-09 13:14:06] 2026-03-09 12:13:34,194 | INFO     | queue payloads had 0 job(s) [purged]
[2026-03-09 13:14:06] 2026-03-09 12:13:34,194 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-09 13:14:06] 2026-03-09 12:13:34,194 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-09 13:14:06] 2026-03-09 12:13:34,194 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-09 13:14:06] 2026-03-09 12:13:34,194 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-09 13:14:06] 2026-03-09 12:13:34,194 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-09 13:14:06] 2026-03-09 12:13:34,194 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-09 13:14:06] 2026-03-09 12:13:34,194 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-09 13:14:06] 2026-03-09 12:13:34,194 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-09 13:14:06] 2026-03-09 12:13:34,194 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-09 13:14:06] 2026-03-09 12:13:34,194 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-09 13:14:06] 2026-03-09 12:13:34,194 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-09 13:14:06] 2026-03-09 12:13:34,194 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-09 13:14:06] 2026-03-09 12:13:34,194 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-09 13:14:06] 2026-03-09 12:13:34,194 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-09 13:14:06] 2026-03-09 12:13:34,194 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-09 13:14:06] 2026-03-09 12:13:34,194 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-09 13:14:06] 2026-03-09 12:13:34,194 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-09 13:14:06] 2026-03-09 12:13:34,194 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-09 13:14:06] 2026-03-09 12:13:34,195 | INFO     | job 7045950487 has completed (purged errors)
[2026-03-09 13:14:06] 2026-03-09 12:13:34,195 | INFO     | overall cleanup function is called
[2026-03-09 13:14:06] 2026-03-09 12:13:35,201 | INFO     | --- collectZombieJob: --- 10, [306590]
[2026-03-09 13:14:06] 2026-03-09 12:13:35,201 | INFO     | zombie collector waiting for pid 306590
[2026-03-09 13:14:06] 2026-03-09 12:13:35,201 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-09 13:14:06] 2026-03-09 12:13:35,201 | INFO     | collected zombie processes
[2026-03-09 13:14:06] 2026-03-09 12:13:35,201 | INFO     | will attempt to kill all subprocesses of pid=306590
[2026-03-09 13:14:06] 2026-03-09 12:13:35,756 | INFO     | process IDs to be killed: [306590] (in reverse order)
[2026-03-09 13:14:06] 2026-03-09 12:13:35,983 | WARNING  | found no corresponding commands to process id(s)
[2026-03-09 13:14:06] 2026-03-09 12:13:35,983 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-09 13:14:06] 2026-03-09 12:13:36,011 | INFO     | did not find any defunct processes belonging to 306590
[2026-03-09 13:14:06] 2026-03-09 12:13:36,037 | INFO     | did not find any defunct processes belonging to 306590
[2026-03-09 13:14:06] 2026-03-09 12:13:36,037 | INFO     | ready for new job
[2026-03-09 13:14:06] 2026-03-09 12:13:36,037 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-09 13:14:06] 2026-03-09 12:13:36,039 | INFO     | **************************************
[2026-03-09 13:14:06] 2026-03-09 12:13:36,039 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-03-09 13:14:06] 2026-03-09 12:13:36,039 | INFO     | **************************************
[2026-03-09 13:14:06] 2026-03-09 12:13:36,039 | INFO     | 
[2026-03-09 13:14:06] 2026-03-09 12:13:36,045 | INFO     | architecture information:
[2026-03-09 13:14:06] 2026-03-09 12:13:36,045 | INFO     | executing command: cat /etc/os-release
[2026-03-09 13:14:06] 2026-03-09 12:13:36,058 | INFO     | cat /etc/os-release:
[2026-03-09 13:14:06] NAME="CentOS Linux"
[2026-03-09 13:14:06] VERSION="7 (Core)"
[2026-03-09 13:14:06] ID="centos"
[2026-03-09 13:14:06] ID_LIKE="rhel fedora"
[2026-03-09 13:14:06] VERSION_ID="7"
[2026-03-09 13:14:06] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-09 13:14:06] ANSI_COLOR="0;31"
[2026-03-09 13:14:06] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-09 13:14:06] HOME_URL="https://www.centos.org/"
[2026-03-09 13:14:06] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-09 13:14:06] 
[2026-03-09 13:14:06] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-09 13:14:06] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-09 13:14:06] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-09 13:14:06] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-09 13:14:06] 
[2026-03-09 13:14:06] 2026-03-09 12:13:36,059 | INFO     | **************************************
[2026-03-09 13:14:06] 2026-03-09 12:13:36,561 | INFO     | executing command: df -mP /var/lib/boinc/var/slot76/slots/3
[2026-03-09 13:14:06] 2026-03-09 12:13:36,578 | INFO     | sufficient remaining disk space (20108541952 B)
[2026-03-09 13:14:06] 2026-03-09 12:13:36,578 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-09 13:14:06] 2026-03-09 12:13:36,578 | INFO     | current server update state: UPDATING_FINAL
[2026-03-09 13:14:06] 2026-03-09 12:13:36,578 | INFO     | update_server=False
[2026-03-09 13:14:06] 2026-03-09 12:13:36,578 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-09 13:14:06] 2026-03-09 12:13:36,578 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-09 13:14:06] 2026-03-09 12:13:36,780 | INFO     | all payload control threads have been joined
[2026-03-09 13:14:06] 2026-03-09 12:13:36,987 | INFO     | all job control threads have been joined
[2026-03-09 13:14:06] 2026-03-09 12:13:37,006 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-09 13:14:06] 2026-03-09 12:13:37,087 | INFO     | all data control threads have been joined
[2026-03-09 13:14:06] 2026-03-09 12:13:37,583 | INFO     | [job] retrieve thread has finished
[2026-03-09 13:14:06] 2026-03-09 12:13:37,591 | WARNING  | process 306590 can no longer be monitored (due to stat problems) - aborting
[2026-03-09 13:14:06] 2026-03-09 12:13:37,691 | INFO     | [job] validate thread has finished
[2026-03-09 13:14:06] 2026-03-09 12:13:37,785 | INFO     | [payload] control thread has finished
[2026-03-09 13:14:06] 2026-03-09 12:13:37,864 | INFO     | [data] copytool_in thread has finished
[2026-03-09 13:14:06] 2026-03-09 12:13:37,921 | INFO     | using path: /var/lib/boinc/var/slot76/slots/3/memory_monitor_summary.json (trf name=prmon)
[2026-03-09 13:14:06] 2026-03-09 12:13:37,992 | INFO     | [job] control thread has finished
[2026-03-09 13:14:06] 2026-03-09 12:13:38,092 | INFO     | [data] control thread has finished
[2026-03-09 13:14:06] 2026-03-09 12:13:38,227 | INFO     | [payload] validate_pre thread has finished
[2026-03-09 13:14:06] 2026-03-09 12:13:38,373 | INFO     | [payload] execute_payloads thread has finished
[2026-03-09 13:14:06] 2026-03-09 12:13:38,396 | INFO     | number of running child processes to parent process 306590: 1
[2026-03-09 13:14:06] 2026-03-09 12:13:38,396 | INFO     | maximum number of monitored processes: 6
[2026-03-09 13:14:06] 2026-03-09 12:13:38,396 | INFO     | aborting job monitoring since job object (job id=7045950487) has expired
[2026-03-09 13:14:06] 2026-03-09 12:13:38,396 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-09 13:14:06] 2026-03-09 12:13:38,396 | INFO     | will abort loop
[2026-03-09 13:14:06] 2026-03-09 12:13:38,399 | INFO     | [job] create_data_payload thread has finished
[2026-03-09 13:14:06] 2026-03-09 12:13:38,692 | INFO     | [payload] failed_post thread has finished
[2026-03-09 13:14:06] 2026-03-09 12:13:38,723 | INFO     | [payload] validate_post thread has finished
[2026-03-09 13:14:06] 2026-03-09 12:13:39,011 | INFO     | [data] copytool_out thread has finished
[2026-03-09 13:14:06] 2026-03-09 12:13:39,180 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-09 13:14:06] 2026-03-09 12:13:39,401 | INFO     | [job] job monitor thread has finished
[2026-03-09 13:14:06] 2026-03-09 12:13:39,441 | INFO     | job.realtimelogging is not enabled
[2026-03-09 13:14:06] 2026-03-09 12:13:40,185 | INFO     | [job] queue monitor thread has finished
[2026-03-09 13:14:06] 2026-03-09 12:13:40,449 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-09 13:14:06] 2026-03-09 12:13:40,586 | INFO     | [data] queue_monitor thread has finished
[2026-03-09 13:14:06] 2026-03-09 12:13:41,365 [wrapper] supervise_pilot (15 min periods counter: 9)
[2026-03-09 13:14:06] 2026-03-09 12:13:57,645 | INFO     | [monitor] cgroup control has ended
[2026-03-09 13:14:06] 2026-03-09 12:13:58,084 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 22745502177088)>', '<ExcThread(monitor, started 22745190463232)>']
[2026-03-09 13:14:06] 2026-03-09 12:14:03,109 | INFO     | all workflow threads have been joined
[2026-03-09 13:14:06] 2026-03-09 12:14:03,109 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-09 13:14:06] 2026-03-09 12:14:03,109 | INFO     | traces error code: 0
[2026-03-09 13:14:06] 2026-03-09 12:14:03,110 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-09 13:14:06] 2026-03-09 12:14:06,014 | INFO     | PID=300682 has CPU usage=7.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-03-09 13:14:06] 2026-03-09 12:14:06,015 | INFO     | .. there are 55 such processes running
[2026-03-09 13:14:06] 2026-03-09 12:14:06,015 | INFO     | found 0 job(s) in 20 queues
[2026-03-09 13:14:06] 2026-03-09 12:14:06,015 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-09 13:14:06] 2026-03-09 12:14:06,015 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-09 13:14:06] 2026-03-09 12:14:06,015 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-09 13:14:06] 2026-03-09 12:14:06,016 | CRITICAL | thread 'MainThread' is not alive
[2026-03-09 13:14:06] 2026-03-09 12:14:06,016 | INFO     | [monitor] control thread has ended
[2026-03-09 13:14:06] 2026-03-09 12:14:06,136 [wrapper] ==== pilot stdout END ====
[2026-03-09 13:14:06] 2026-03-09 12:14:06,138 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-09 13:14:06] 2026-03-09 12:14:06,140 [wrapper] pilotpid: 300682
[2026-03-09 13:14:06] 2026-03-09 12:14:06,142 [wrapper] Pilot exit status: 0
[2026-03-09 13:14:06] 2026-03-09 12:14:06,157 [wrapper] pandaids: 7045950487
[2026-03-09 13:14:06] 2026-03-09 12:14:06,284 [wrapper] cleanup supervisor_pilot 1399169 300683
[2026-03-09 13:14:06] 2026-03-09 12:14:06,286 [wrapper] Test setup, not cleaning
[2026-03-09 13:14:06] 2026-03-09 12:14:06,288 [wrapper] apfmon messages muted
[2026-03-09 13:14:06] 2026-03-09 12:14:06,289 [wrapper] ==== wrapper stdout END ====
[2026-03-09 13:14:06] 2026-03-09 12:14:06,290 [wrapper] ==== wrapper stderr END ====
[2026-03-09 13:14:06]  *** Error codes and diagnostics ***
[2026-03-09 13:14:06]     "exeErrorCode": 0,
[2026-03-09 13:14:06]     "exeErrorDiag": "",
[2026-03-09 13:14:06]     "pilotErrorCode": 0,
[2026-03-09 13:14:06]     "pilotErrorDiag": "",
[2026-03-09 13:14:06]  *** Listing of results directory ***
[2026-03-09 13:14:06] total 601204
[2026-03-09 13:14:06] -rw-r--r--. 1 boinc boinc    584627 Mar  8 08:59 pilot3.tar.gz
[2026-03-09 13:14:06] -rw-r--r--. 1 boinc boinc      5111 Mar  8 09:56 queuedata.json
[2026-03-09 13:14:06] -rwx------. 1 boinc boinc     36322 Mar  8 09:56 runpilot2-wrapper.sh
[2026-03-09 13:14:06] -rw-r--r--. 1 boinc boinc       100 Mar  9 11:13 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-09 13:14:06] -rwxr-xr-x. 1 boinc boinc      7986 Mar  9 11:13 run_atlas
[2026-03-09 13:14:06] -rw-r--r--. 1 boinc boinc       105 Mar  9 11:13 job.xml
[2026-03-09 13:14:06] -rw-r--r--. 1 boinc boinc      6707 Mar  9 11:13 init_data.xml
[2026-03-09 13:14:06] -rw-r--r--. 2 boinc boinc 345032857 Mar  9 11:13 EVNT.48998009._000043.pool.root.1
[2026-03-09 13:14:06] -rw-r--r--. 2 boinc boinc     15845 Mar  9 11:13 start_atlas.sh
[2026-03-09 13:14:06] drwxrwx--x. 2 boinc boinc      4096 Mar  9 11:13 shared
[2026-03-09 13:14:06] -rw-r--r--. 2 boinc boinc    597959 Mar  9 11:13 input.tar.gz
[2026-03-09 13:14:06] -rw-r--r--. 1 boinc boinc         0 Mar  9 11:13 boinc_lockfile
[2026-03-09 13:14:06] -rw-r--r--. 1 boinc boinc      2585 Mar  9 11:13 pandaJob.out
[2026-03-09 13:14:06] -rw-------. 1 boinc boinc    987066 Mar  9 11:13 agis_schedconf.cvmfs.json
[2026-03-09 13:14:06] -rw-------. 1 boinc boinc   1511578 Mar  9 11:13 agis_ddmendpoints.agis.ALL.json
[2026-03-09 13:14:06] -rw-------. 1 boinc boinc       441 Mar  9 11:13 workernode_map.json
[2026-03-09 13:14:06] drwx------. 5 boinc boinc      4096 Mar  9 11:13 pilot3
[2026-03-09 13:14:06] -rw-------. 1 boinc boinc 264044240 Mar  9 13:13 HITS.48998012._000811.pool.root.1
[2026-03-09 13:14:06] -rw-r--r--. 1 boinc boinc       529 Mar  9 13:13 boinc_task_state.xml
[2026-03-09 13:14:06] -rw-------. 1 boinc boinc      1031 Mar  9 13:13 memory_monitor_summary.json
[2026-03-09 13:14:06] -rw-------. 1 boinc boinc    298740 Mar  9 13:13 log.48998012._000811.job.log.tgz.1
[2026-03-09 13:14:06] -rw-------. 1 boinc boinc      6343 Mar  9 13:13 heartbeat.json
[2026-03-09 13:14:06] -rw-r--r--. 1 boinc boinc      8192 Mar  9 13:13 boinc_mmap_file
[2026-03-09 13:14:06] -rw-r--r--. 1 boinc boinc        27 Mar  9 13:13 wrapper_checkpoint.txt
[2026-03-09 13:14:06] -rw-------. 1 boinc boinc       892 Mar  9 13:14 pilotlog.txt
[2026-03-09 13:14:06] -rw-------. 1 boinc boinc        95 Mar  9 13:14 pilot_heartbeat.json
[2026-03-09 13:14:06] -rw-------. 1 boinc boinc   1023163 Mar  9 13:14 log.48998012._000811.job.log.1
[2026-03-09 13:14:06] -rw-------. 1 boinc boinc       357 Mar  9 13:14 output.list
[2026-03-09 13:14:06] -rw-r--r--. 1 boinc boinc       620 Mar  9 13:14 runtime_log
[2026-03-09 13:14:06] -rw-------. 1 boinc boinc   1341440 Mar  9 13:14 result.tar.gz
[2026-03-09 13:14:06] -rw-------. 1 boinc boinc       663 Mar  9 13:14 sHSKDm46OJ9n9Rq4apOajLDm4fhM0noT9bVooX4SDmGIWLDmgJAIjm.diag
[2026-03-09 13:14:06] -rw-r--r--. 1 boinc boinc      9204 Mar  9 13:14 runtime_log.err
[2026-03-09 13:14:06] -rw-r--r--. 1 boinc boinc     21007 Mar  9 13:14 stderr.txt
[2026-03-09 13:14:06] HITS file was successfully produced:
[2026-03-09 13:14:06] -rw-------. 1 boinc boinc 264044240 Mar  9 13:13 shared/HITS.pool.root.1
[2026-03-09 13:14:06]  *** Contents of shared directory: ***
[2026-03-09 13:14:06] total 596724
[2026-03-09 13:14:06] -rw-r--r--. 2 boinc boinc 345032857 Mar  9 11:13 ATLAS.root_0
[2026-03-09 13:14:06] -rw-r--r--. 2 boinc boinc     15845 Mar  9 11:13 start_atlas.sh
[2026-03-09 13:14:06] -rw-r--r--. 2 boinc boinc    597959 Mar  9 11:13 input.tar.gz
[2026-03-09 13:14:06] -rw-------. 1 boinc boinc 264044240 Mar  9 13:13 HITS.pool.root.1
[2026-03-09 13:14:06] -rw-------. 1 boinc boinc   1341440 Mar  9 13:14 result.tar.gz
13:14:08 (296116): run_atlas exited; CPU time 27382.059382
13:14:08 (296116): called boinc_finish(0)

</stderr_txt>
]]>

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