Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
05:35:37 (2665356): wrapper (7.7.26015): starting
05:35:37 (2665356): wrapper: running run_atlas (--nthreads 4)
[2026-03-09 05:35:37] Arguments: --nthreads 4
[2026-03-09 05:35:37] Threads: 4
[2026-03-09 05:35:37] Checking for CVMFS
[2026-03-09 05:35:37] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-09 05:35:37] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-09 05:35:37] Running cvmfs_config stat atlas.cern.ch
[2026-03-09 05:35:38] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-09 05:35:38] 2.9.2.0 3074 15070 102948 157065 3 49 28670297 36864001 0 130560 0 6724965 99.985 564928 13101 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-03-09 05:35:38] CVMFS is ok
[2026-03-09 05:35:38] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-09 05:35:38] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-09 05:35:38] Further information can be found at the LHC@home message board.
[2026-03-09 05:35:38] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-09 05:35:38] Checking for apptainer binary...
[2026-03-09 05:35:38] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-09 05:35:38] Running /usr/bin/apptainer --version
[2026-03-09 05:35:38] apptainer version 1.4.1-1.1
[2026-03-09 05:35:38] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-09 05:35:38] thA314
[2026-03-09 05:35:38] apptainer works
[2026-03-09 05:35:38] Set ATHENA_PROC_NUMBER=4
[2026-03-09 05:35:38] Set ATHENA_CORE_NUMBER=4
[2026-03-09 05:35:38] Starting ATLAS job with PandaID=7045949669
[2026-03-09 05:35:38] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-09 06:49:10]  *** The last 200 lines of the pilot log: ***
[2026-03-09 06:49:10] 2026-03-09 05:48:51,717 | INFO     | did not find any defunct processes belonging to 2673992
[2026-03-09 06:49:10] 2026-03-09 05:48:51,718 | INFO     | ready for new job
[2026-03-09 06:49:10] 2026-03-09 05:48:51,718 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-09 06:49:10] 2026-03-09 05:48:51,718 | INFO     | **************************************
[2026-03-09 06:49:10] 2026-03-09 05:48:51,718 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-03-09 06:49:10] 2026-03-09 05:48:51,718 | INFO     | **************************************
[2026-03-09 06:49:10] 2026-03-09 05:48:51,718 | INFO     | 
[2026-03-09 06:49:10] 2026-03-09 05:48:51,719 | INFO     | architecture information:
[2026-03-09 06:49:10] 2026-03-09 05:48:51,719 | INFO     | executing command: cat /etc/os-release
[2026-03-09 06:49:10] 2026-03-09 05:48:51,733 | INFO     | cat /etc/os-release:
[2026-03-09 06:49:10] NAME="CentOS Linux"
[2026-03-09 06:49:10] VERSION="7 (Core)"
[2026-03-09 06:49:10] ID="centos"
[2026-03-09 06:49:10] ID_LIKE="rhel fedora"
[2026-03-09 06:49:10] VERSION_ID="7"
[2026-03-09 06:49:10] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-09 06:49:10] ANSI_COLOR="0;31"
[2026-03-09 06:49:10] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-09 06:49:10] HOME_URL="https://www.centos.org/"
[2026-03-09 06:49:10] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-09 06:49:10] 
[2026-03-09 06:49:10] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-09 06:49:10] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-09 06:49:10] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-09 06:49:10] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-09 06:49:10] 
[2026-03-09 06:49:10] 2026-03-09 05:48:51,733 | INFO     | **************************************
[2026-03-09 06:49:10] 2026-03-09 05:48:52,237 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-03-09 06:49:10] 2026-03-09 05:48:52,254 | INFO     | sufficient remaining disk space (227163504640 B)
[2026-03-09 06:49:10] 2026-03-09 05:48:52,254 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-09 06:49:10] 2026-03-09 05:48:52,254 | INFO     | current server update state: UPDATING_FINAL
[2026-03-09 06:49:10] 2026-03-09 05:48:52,254 | INFO     | update_server=False
[2026-03-09 06:49:10] 2026-03-09 05:48:52,254 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-09 06:49:10] 2026-03-09 05:48:52,254 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2026-03-09 06:49:10] 2026-03-09 05:48:52,254 | INFO     | found 0 job(s) in 20 queues
[2026-03-09 06:49:10] 2026-03-09 05:48:52,255 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-09 06:49:10] 2026-03-09 05:48:52,255 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-09 06:49:10] 2026-03-09 05:48:52,255 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-09 06:49:10] 2026-03-09 05:48:52,380 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-03-09 06:49:10] 2026-03-09 05:48:52,380 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-03-09 06:49:10] 2026-03-09 05:48:52,380 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-09 06:49:10] 2026-03-09 05:48:52,380 | INFO     | will abort loop
[2026-03-09 06:49:10] 2026-03-09 05:48:52,788 | INFO     | all data control threads have been joined
[2026-03-09 06:49:10] 2026-03-09 05:48:53,260 | INFO     | [job] retrieve thread has finished
[2026-03-09 06:49:10] 2026-03-09 05:48:53,298 | INFO     | [payload] validate_pre thread has finished
[2026-03-09 06:49:10] 2026-03-09 05:48:53,299 | INFO     | [job] create_data_payload thread has finished
[2026-03-09 06:49:10] 2026-03-09 05:48:53,386 | INFO     | [job] job monitor thread has finished
[2026-03-09 06:49:10] 2026-03-09 05:48:53,489 | INFO     | [data] copytool_in thread has finished
[2026-03-09 06:49:10] 2026-03-09 05:48:53,503 | INFO     | [payload] execute_payloads thread has finished
[2026-03-09 06:49:10] 2026-03-09 05:48:53,751 | INFO     | all payload control threads have been joined
[2026-03-09 06:49:10] 2026-03-09 05:48:53,793 | INFO     | [data] control thread has finished
[2026-03-09 06:49:10] 2026-03-09 05:48:53,860 | INFO     | [payload] failed_post thread has finished
[2026-03-09 06:49:10] 2026-03-09 05:48:53,862 | INFO     | all job control threads have been joined
[2026-03-09 06:49:10] 2026-03-09 05:48:54,260 | INFO     | [data] copytool_out thread has finished
[2026-03-09 06:49:10] 2026-03-09 05:48:54,418 | INFO     | [payload] validate_post thread has finished
[2026-03-09 06:49:10] 2026-03-09 05:48:54,640 | INFO     | [job] validate thread has finished
[2026-03-09 06:49:10] 2026-03-09 05:48:54,757 | INFO     | [payload] control thread has finished
[2026-03-09 06:49:10] 2026-03-09 05:48:54,848 | INFO     | [monitor] cgroup control has ended
[2026-03-09 06:49:10] 2026-03-09 05:48:54,867 | INFO     | [job] control thread has finished
[2026-03-09 06:49:10] 2026-03-09 05:48:55,215 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-09 06:49:10] 2026-03-09 05:48:55,262 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-09 06:49:10] 2026-03-09 05:48:56,221 | INFO     | [job] queue monitor thread has finished
[2026-03-09 06:49:10] 2026-03-09 05:48:59,269 | INFO     | [data] queue_monitor thread has finished
[2026-03-09 06:49:10] 2026-03-09 05:49:02,872 | INFO     | job.realtimelogging is not enabled
[2026-03-09 06:49:10] 2026-03-09 05:49:03,878 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-09 06:49:10] 2026-03-09 05:49:05,084 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140017315006272)>', '<ExcThread(monitor, started 140016453932800)>']
[2026-03-09 06:49:10] 2026-03-09 05:49:05,323 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-09 06:49:10] 2026-03-09 05:49:05,324 | INFO     | [monitor] control thread has ended
[2026-03-09 06:49:10] 2026-03-09 05:49:10,110 | INFO     | all workflow threads have been joined
[2026-03-09 06:49:10] 2026-03-09 05:49:10,110 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-09 06:49:10] 2026-03-09 05:49:10,110 | INFO     | traces error code: 0
[2026-03-09 06:49:10] 2026-03-09 05:49:10,110 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-09 06:49:10] 2026-03-09 05:49:10,187 [wrapper] ==== pilot stdout END ====
[2026-03-09 06:49:10] 2026-03-09 05:49:10,191 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-09 06:49:10] 2026-03-09 05:49:10,195 [wrapper] pilotpid: 2669470
[2026-03-09 06:49:10] 2026-03-09 05:49:10,199 [wrapper] Pilot exit status: 0
[2026-03-09 06:49:10] 2026-03-09 05:49:10,210 [wrapper] pandaids: 7045949669
[2026-03-09 06:49:10] 2026-03-09 05:49:10,233 [wrapper] cleanup supervisor_pilot 2680309 2669471
[2026-03-09 06:49:10] 2026-03-09 05:49:10,237 [wrapper] Test setup, not cleaning
[2026-03-09 06:49:10] 2026-03-09 05:49:10,241 [wrapper] apfmon messages muted
[2026-03-09 06:49:10] 2026-03-09 05:49:10,245 [wrapper] ==== wrapper stdout END ====
[2026-03-09 06:49:10] 2026-03-09 05:49:10,249 [wrapper] ==== wrapper stderr END ====
[2026-03-09 06:49:10]  *** Error codes and diagnostics ***
[2026-03-09 06:49:10]     "exeErrorCode": 0,
[2026-03-09 06:49:10]     "exeErrorDiag": "",
[2026-03-09 06:49:10]     "pilotErrorCode": 0,
[2026-03-09 06:49:10]     "pilotErrorDiag": "",
[2026-03-09 06:49:10]  *** Listing of results directory ***
[2026-03-09 06:49:10] total 441984
[2026-03-09 06:49:10] -rw-r--r-- 1 boinc boinc    584627 Mar  8 08:59 pilot3.tar.gz
[2026-03-09 06:49:10] -rw-r--r-- 1 boinc boinc      5111 Mar  8 09:54 queuedata.json
[2026-03-09 06:49:10] -rwx------ 1 boinc boinc     36322 Mar  8 09:55 runpilot2-wrapper.sh
[2026-03-09 06:49:10] -rw-r--r-- 1 boinc boinc       100 Mar  9 05:35 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-09 06:49:10] -rwxr-xr-x 1 boinc boinc      7986 Mar  9 05:35 run_atlas
[2026-03-09 06:49:10] -rw-r--r-- 1 boinc boinc       105 Mar  9 05:35 job.xml
[2026-03-09 06:49:10] -rw-r--r-- 2 boinc boinc 266024510 Mar  9 05:35 EVNT.48958633._000072.pool.root.1
[2026-03-09 06:49:10] -rw-r--r-- 2 boinc boinc    597928 Mar  9 05:35 input.tar.gz
[2026-03-09 06:49:10] -rw-r--r-- 2 boinc boinc     15845 Mar  9 05:35 start_atlas.sh
[2026-03-09 06:49:10] drwxrwx--x 2 boinc boinc      4096 Mar  9 05:35 shared
[2026-03-09 06:49:10] -rw-r--r-- 1 boinc boinc         0 Mar  9 05:35 boinc_setup_complete
[2026-03-09 06:49:10] -rw-r--r-- 1 boinc boinc      6376 Mar  9 05:35 init_data.xml
[2026-03-09 06:49:10] -rw-r--r-- 1 boinc boinc         0 Mar  9 05:35 boinc_lockfile
[2026-03-09 06:49:10] -rw-r--r-- 1 boinc boinc      2525 Mar  9 05:35 pandaJob.out
[2026-03-09 06:49:10] -rw------- 1 boinc boinc    999108 Mar  9 05:35 agis_schedconf.cvmfs.json
[2026-03-09 06:49:10] -rw------- 1 boinc boinc   1511578 Mar  9 05:35 agis_ddmendpoints.agis.ALL.json
[2026-03-09 06:49:10] -rw------- 1 boinc boinc       427 Mar  9 05:35 workernode_map.json
[2026-03-09 06:49:10] drwx------ 5 boinc boinc      4096 Mar  9 05:35 pilot3
[2026-03-09 06:49:10] -rw------- 1 boinc boinc        95 Mar  9 06:48 pilot_heartbeat.json
[2026-03-09 06:49:10] -rw------- 1 boinc boinc 180861836 Mar  9 06:48 HITS.48958635._001823.pool.root.1
[2026-03-09 06:49:10] -rw-r--r-- 1 boinc boinc       529 Mar  9 06:48 boinc_task_state.xml
[2026-03-09 06:49:10] -rw------- 1 boinc boinc      1020 Mar  9 06:48 memory_monitor_summary.json
[2026-03-09 06:49:10] -rw------- 1 boinc boinc    245669 Mar  9 06:48 log.48958635._001823.job.log.tgz.1
[2026-03-09 06:49:10] -rw------- 1 boinc boinc      6310 Mar  9 06:48 heartbeat.json
[2026-03-09 06:49:10] -rw-r--r-- 1 boinc boinc      8192 Mar  9 06:48 boinc_mmap_file
[2026-03-09 06:49:10] -rw-r--r-- 1 boinc boinc        27 Mar  9 06:48 wrapper_checkpoint.txt
[2026-03-09 06:49:10] -rw------- 1 boinc boinc      4810 Mar  9 06:49 pilotlog.txt
[2026-03-09 06:49:10] -rw------- 1 boinc boinc    647596 Mar  9 06:49 log.48958635._001823.job.log.1
[2026-03-09 06:49:10] -rw------- 1 boinc boinc       357 Mar  9 06:49 output.list
[2026-03-09 06:49:10] -rw-r--r-- 1 boinc boinc       620 Mar  9 06:49 runtime_log
[2026-03-09 06:49:10] -rw------- 1 boinc boinc    911360 Mar  9 06:49 result.tar.gz
[2026-03-09 06:49:10] -rw-r--r-- 1 boinc boinc      8896 Mar  9 06:49 runtime_log.err
[2026-03-09 06:49:10] -rw------- 1 boinc boinc       657 Mar  9 06:49 6xwMDmn5OJ9nsSi4ap6QjLDmwznN0nGgGQJmIVkRDmmfYLDmwEabLn.diag
[2026-03-09 06:49:10] -rw-r--r-- 1 boinc boinc      9883 Mar  9 06:49 stderr.txt
[2026-03-09 06:49:10] HITS file was successfully produced:
[2026-03-09 06:49:10] -rw------- 1 boinc boinc 180861836 Mar  9 06:48 shared/HITS.pool.root.1
[2026-03-09 06:49:10]  *** Contents of shared directory: ***
[2026-03-09 06:49:10] total 437916
[2026-03-09 06:49:10] -rw-r--r-- 2 boinc boinc 266024510 Mar  9 05:35 ATLAS.root_0
[2026-03-09 06:49:10] -rw-r--r-- 2 boinc boinc    597928 Mar  9 05:35 input.tar.gz
[2026-03-09 06:49:10] -rw-r--r-- 2 boinc boinc     15845 Mar  9 05:35 start_atlas.sh
[2026-03-09 06:49:10] -rw------- 1 boinc boinc 180861836 Mar  9 06:48 HITS.pool.root.1
[2026-03-09 06:49:10] -rw------- 1 boinc boinc    911360 Mar  9 06:49 result.tar.gz
06:49:12 (2665356): run_atlas exited; CPU time 16459.146697
06:49:12 (2665356): called boinc_finish(0)

</stderr_txt>
]]>

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