Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
19:05:03 (647629): wrapper (7.7.26015): starting
19:05:03 (647629): wrapper: running run_atlas (--nthreads 4)
[2026-03-09 19:05:03] Arguments: --nthreads 4
[2026-03-09 19:05:03] Threads: 4
[2026-03-09 19:05:03] Checking for CVMFS
[2026-03-09 19:05:03] No cvmfs_config command found, will try listing directly
[2026-03-09 19:05:03] CVMFS is ok
[2026-03-09 19:05:03] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-09 19:05:03] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-09 19:05:03] Further information can be found at the LHC@home message board.
[2026-03-09 19:05:03] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-09 19:05:03] Checking for apptainer binary...
[2026-03-09 19:05:03] which: no apptainer in ((null))
[2026-03-09 19:05:03] apptainer is not installed, using version from CVMFS
[2026-03-09 19:05:03] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-09 19:05:03] WARNING: Environment variable TMPDIR already has value [/var/lib/boinc/var/slot208/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut28.grid.cesnet.cz
[2026-03-09 19:05:03] apptainer works
[2026-03-09 19:05:03] Set ATHENA_PROC_NUMBER=4
[2026-03-09 19:05:03] Set ATHENA_CORE_NUMBER=4
[2026-03-09 19:05:03] Starting ATLAS job with PandaID=7038524999
[2026-03-09 19:05:03] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc/var/slot208/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
19:13:58 (755987): wrapper (7.7.26015): starting
19:13:58 (755987): wrapper: running run_atlas (--nthreads 4)
[2026-03-09 19:13:58] Arguments: --nthreads 4
[2026-03-09 19:13:58] Threads: 4
[2026-03-09 19:13:58] This job has been restarted, cleaning up previous attempt
[2026-03-09 19:13:58] Checking for CVMFS
[2026-03-09 19:13:58] No cvmfs_config command found, will try listing directly
[2026-03-09 19:13:58] CVMFS is ok
[2026-03-09 19:13:58] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-09 19:13:58] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-09 19:13:58] Further information can be found at the LHC@home message board.
[2026-03-09 19:13:58] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-09 19:13:58] Checking for apptainer binary...
[2026-03-09 19:13:58] which: no apptainer in ((null))
[2026-03-09 19:13:58] apptainer is not installed, using version from CVMFS
[2026-03-09 19:13:58] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-09 19:13:58] WARNING: Environment variable TMPDIR already has value [/var/lib/boinc/var/slot208/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut28.grid.cesnet.cz
[2026-03-09 19:13:58] apptainer works
[2026-03-09 19:13:58] Set ATHENA_PROC_NUMBER=4
[2026-03-09 19:13:58] Set ATHENA_CORE_NUMBER=4
[2026-03-09 19:13:58] Starting ATLAS job with PandaID=7038524999
[2026-03-09 19:13:58] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc/var/slot208/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-09 20:28:15]  *** The last 200 lines of the pilot log: ***
[2026-03-09 20:28:15]  status=None
[2026-03-09 20:28:15]  status_code=0
[2026-03-09 20:28:15]  storage_token=
[2026-03-09 20:28:15]  surl=/var/lib/boinc/var/slot208/slots/0/PanDA_Pilot-7038524999/log.48955015._001933.job.log.tgz.1
[2026-03-09 20:28:15]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/ba/fc/log.48955015._001933.job.log.tgz.1
[2026-03-09 20:28:15]  workdir=None
[2026-03-09 20:28:15] ]
[2026-03-09 20:28:15] 2026-03-09 19:27:38,261 | INFO     | transferring file log.48955015._001933.job.log.tgz.1 from /var/lib/boinc/var/slot208/slots/0/PanDA_Pilot-7038524999/log.48955015._001933.job.log.tgz.1 to /var/lib/
[2026-03-09 20:28:15] 2026-03-09 19:27:38,261 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc/var/slot208/slots/0/PanDA_Pilot-7038524999/log.48955015._001933.job.log.tgz.1 /var/lib/boinc/var/slot208/slots/0/
[2026-03-09 20:28:15] 2026-03-09 19:27:38,277 | INFO     | adding to output.list: log.48955015._001933.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/ba/fc/log.48955015._001933.job.log.tg
[2026-03-09 20:28:15] 2026-03-09 19:27:38,278 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-03-09 20:28:15] 2026-03-09 19:27:38,278 | INFO     | summary of transferred files:
[2026-03-09 20:28:15] 2026-03-09 19:27:38,278 | INFO     |  -- lfn=log.48955015._001933.job.log.tgz.1, status_code=0, status=transferred
[2026-03-09 20:28:15] 2026-03-09 19:27:38,278 | INFO     | stage-out finished correctly
[2026-03-09 20:28:15] 2026-03-09 19:27:38,529 | INFO     | time since job start (4415s) is within the limit (349056.0s)
[2026-03-09 20:28:15] 2026-03-09 19:27:40,534 | INFO     | time since job start (4417s) is within the limit (349056.0s)
[2026-03-09 20:28:15] 2026-03-09 19:27:41,150 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-03-09 20:28:15] 2026-03-09 19:27:42,326 | INFO     | job 7038524999 has state=finished
[2026-03-09 20:28:15] 2026-03-09 19:27:42,326 | INFO     | preparing for final server update for job 7038524999 in state='finished'
[2026-03-09 20:28:15] 2026-03-09 19:27:42,327 | INFO     | reading metadata from: /var/lib/boinc/var/slot208/slots/0/PanDA_Pilot-7038524999/jobReport.json
[2026-03-09 20:28:15] 2026-03-09 19:27:42,328 | INFO     | added worker_node to metadata from /var/lib/boinc/var/slot208/slots/0/workernode_map.json
[2026-03-09 20:28:15] 2026-03-09 19:27:42,329 | INFO     | this job has now completed (state=finished)
[2026-03-09 20:28:15] 2026-03-09 19:27:42,329 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-03-09 20:28:15] 2026-03-09 19:27:42,329 | INFO     | log transfer has been attempted: DONE
[2026-03-09 20:28:15] 2026-03-09 19:27:42,329 | INFO     | job 7038524999 has finished - writing final server update
[2026-03-09 20:28:15] 2026-03-09 19:27:42,329 | WARNING  | failed to read HTCondor job classAd: [Errno 2] No such file or directory: '/scratch/condor/execute/dir_675245/.job.ad'
[2026-03-09 20:28:15] 2026-03-09 19:27:42,329 | INFO     | total number of processed events: 400 (read)
[2026-03-09 20:28:15] 2026-03-09 19:27:42,347 | INFO     | using path: /var/lib/boinc/var/slot208/slots/0/PanDA_Pilot-7038524999/memory_monitor_summary.json (trf name=prmon)
[2026-03-09 20:28:15] 2026-03-09 19:27:42,347 | INFO     | extracted standard info from prmon json
[2026-03-09 20:28:15] 2026-03-09 19:27:42,347 | INFO     | extracted standard memory fields from prmon json
[2026-03-09 20:28:15] 2026-03-09 19:27:42,348 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-03-09 20:28:15] 2026-03-09 19:27:42,348 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-03-09 20:28:15] 2026-03-09 19:27:42,348 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-03-09 20:28:15] 2026-03-09 19:27:42,349 | INFO     | fitting pss+swap vs Time
[2026-03-09 20:28:15] 2026-03-09 19:27:42,349 | INFO     | sum of square deviations: 89127252.5
[2026-03-09 20:28:15] 2026-03-09 19:27:42,349 | INFO     | sum of deviations: 488508038.5
[2026-03-09 20:28:15] 2026-03-09 19:27:42,349 | INFO     | mean x: 1773082346.5
[2026-03-09 20:28:15] 2026-03-09 19:27:42,349 | INFO     | mean y: 2316256.3484848486
[2026-03-09 20:28:15] 2026-03-09 19:27:42,349 | INFO     | intersect: -9715979269.34039
[2026-03-09 20:28:15] 2026-03-09 19:27:42,349 | INFO     | chi2: 0.00011593952137286991
[2026-03-09 20:28:15] 2026-03-09 19:27:42,350 | INFO     | current memory leak: 5.48 B/s (using 66 data points, chi2=0.00)
[2026-03-09 20:28:15] 2026-03-09 19:27:42,350 | INFO     | could have reported an average CPU frequency of 3604 MHz (6 samples)
[2026-03-09 20:28:15] 2026-03-09 19:27:42,350 | INFO     | ..............................
[2026-03-09 20:28:15] 2026-03-09 19:27:42,350 | INFO     | . Timing measurements:
[2026-03-09 20:28:15] 2026-03-09 19:27:42,350 | INFO     | . get job = 0 s
[2026-03-09 20:28:15] 2026-03-09 19:27:42,350 | INFO     | . initial setup = 0 s
[2026-03-09 20:28:15] 2026-03-09 19:27:42,350 | INFO     | . payload setup = 2 s
[2026-03-09 20:28:15] 2026-03-09 19:27:42,350 | INFO     | . stage-in = 0 s
[2026-03-09 20:28:15] 2026-03-09 19:27:42,350 | INFO     | . payload execution = 4397 s
[2026-03-09 20:28:15] 2026-03-09 19:27:42,350 | INFO     | . stage-out = 0 s
[2026-03-09 20:28:15] 2026-03-09 19:27:42,350 | INFO     | . log creation = 0 s
[2026-03-09 20:28:15] 2026-03-09 19:27:42,350 | INFO     | ..............................
[2026-03-09 20:28:15] 2026-03-09 19:27:42,403 | INFO     | 
[2026-03-09 20:28:15] 2026-03-09 19:27:42,403 | INFO     | job summary report
[2026-03-09 20:28:15] 2026-03-09 19:27:42,403 | INFO     | --------------------------------------------------
[2026-03-09 20:28:15] 2026-03-09 19:27:42,403 | INFO     | PanDA job id: 7038524999
[2026-03-09 20:28:15] 2026-03-09 19:27:42,403 | INFO     | task id: 48955015
[2026-03-09 20:28:15] 2026-03-09 19:27:42,404 | INFO     | errors: (none)
[2026-03-09 20:28:15] 2026-03-09 19:27:42,404 | INFO     | status: LOG_TRANSFER = DONE 
[2026-03-09 20:28:15] 2026-03-09 19:27:42,404 | INFO     | pilot state: finished 
[2026-03-09 20:28:15] 2026-03-09 19:27:42,404 | INFO     | transexitcode: 0
[2026-03-09 20:28:15] 2026-03-09 19:27:42,404 | INFO     | exeerrorcode: 0
[2026-03-09 20:28:15] 2026-03-09 19:27:42,404 | INFO     | exeerrordiag: 
[2026-03-09 20:28:15] 2026-03-09 19:27:42,404 | INFO     | exitcode: 0
[2026-03-09 20:28:15] 2026-03-09 19:27:42,404 | INFO     | exitmsg: OK
[2026-03-09 20:28:15] 2026-03-09 19:27:42,404 | INFO     | cpuconsumptiontime: 16918 s
[2026-03-09 20:28:15] 2026-03-09 19:27:42,404 | INFO     | nevents: 400
[2026-03-09 20:28:15] 2026-03-09 19:27:42,404 | INFO     | neventsw: 0
[2026-03-09 20:28:15] 2026-03-09 19:27:42,404 | INFO     | pid: 822754
[2026-03-09 20:28:15] 2026-03-09 19:27:42,404 | INFO     | pgrp: 822754
[2026-03-09 20:28:15] 2026-03-09 19:27:42,404 | INFO     | corecount: 4
[2026-03-09 20:28:15] 2026-03-09 19:27:42,404 | INFO     | event service: False
[2026-03-09 20:28:15] 2026-03-09 19:27:42,404 | INFO     | sizes: {0: 2280193, 10: 2280193, 4403: 2306268, 4404: 2315345, 4407: 2315345, 4408: 2315539}
[2026-03-09 20:28:15] 2026-03-09 19:27:42,404 | INFO     | --------------------------------------------------
[2026-03-09 20:28:15] 2026-03-09 19:27:42,404 | INFO     | 
[2026-03-09 20:28:15] 2026-03-09 19:27:42,404 | INFO     | executing command: ls -lF /var/lib/boinc/var/slot208/slots/0
[2026-03-09 20:28:15] 2026-03-09 19:27:42,427 | INFO     | queue jobs had 0 job(s) [purged]
[2026-03-09 20:28:15] 2026-03-09 19:27:42,427 | INFO     | queue payloads had 0 job(s) [purged]
[2026-03-09 20:28:15] 2026-03-09 19:27:42,427 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-09 20:28:15] 2026-03-09 19:27:42,427 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-09 20:28:15] 2026-03-09 19:27:42,427 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-09 20:28:15] 2026-03-09 19:27:42,427 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-09 20:28:15] 2026-03-09 19:27:42,427 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-09 20:28:15] 2026-03-09 19:27:42,427 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-09 20:28:15] 2026-03-09 19:27:42,427 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-09 20:28:15] 2026-03-09 19:27:42,428 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-09 20:28:15] 2026-03-09 19:27:42,428 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-09 20:28:15] 2026-03-09 19:27:42,428 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-09 20:28:15] 2026-03-09 19:27:42,428 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-09 20:28:15] 2026-03-09 19:27:42,428 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-09 20:28:15] 2026-03-09 19:27:42,428 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-09 20:28:15] 2026-03-09 19:27:42,428 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-09 20:28:15] 2026-03-09 19:27:42,428 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-09 20:28:15] 2026-03-09 19:27:42,428 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-09 20:28:15] 2026-03-09 19:27:42,428 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-09 20:28:15] 2026-03-09 19:27:42,428 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-09 20:28:15] 2026-03-09 19:27:42,428 | INFO     | job 7038524999 has completed (purged errors)
[2026-03-09 20:28:15] 2026-03-09 19:27:42,428 | INFO     | overall cleanup function is called
[2026-03-09 20:28:15] 2026-03-09 19:27:43,435 | INFO     | --- collectZombieJob: --- 10, [822754]
[2026-03-09 20:28:15] 2026-03-09 19:27:43,435 | INFO     | zombie collector waiting for pid 822754
[2026-03-09 20:28:15] 2026-03-09 19:27:43,435 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-09 20:28:15] 2026-03-09 19:27:43,435 | INFO     | collected zombie processes
[2026-03-09 20:28:15] 2026-03-09 19:27:43,435 | INFO     | will attempt to kill all subprocesses of pid=822754
[2026-03-09 20:28:15] 2026-03-09 19:27:43,855 | INFO     | process IDs to be killed: [822754] (in reverse order)
[2026-03-09 20:28:15] 2026-03-09 19:27:44,062 | WARNING  | found no corresponding commands to process id(s)
[2026-03-09 20:28:15] 2026-03-09 19:27:44,062 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-09 20:28:15] 2026-03-09 19:27:44,130 | INFO     | did not find any defunct processes belonging to 822754
[2026-03-09 20:28:15] 2026-03-09 19:27:44,198 | INFO     | did not find any defunct processes belonging to 822754
[2026-03-09 20:28:15] 2026-03-09 19:27:44,199 | INFO     | ready for new job
[2026-03-09 20:28:15] 2026-03-09 19:27:44,199 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-09 20:28:15] 2026-03-09 19:27:44,201 | INFO     | **************************************
[2026-03-09 20:28:15] 2026-03-09 19:27:44,201 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-03-09 20:28:15] 2026-03-09 19:27:44,201 | INFO     | **************************************
[2026-03-09 20:28:15] 2026-03-09 19:27:44,201 | INFO     | 
[2026-03-09 20:28:15] 2026-03-09 19:27:44,210 | INFO     | architecture information:
[2026-03-09 20:28:15] 2026-03-09 19:27:44,211 | INFO     | executing command: cat /etc/os-release
[2026-03-09 20:28:15] 2026-03-09 19:27:44,226 | INFO     | cat /etc/os-release:
[2026-03-09 20:28:15] NAME="CentOS Linux"
[2026-03-09 20:28:15] VERSION="7 (Core)"
[2026-03-09 20:28:15] ID="centos"
[2026-03-09 20:28:15] ID_LIKE="rhel fedora"
[2026-03-09 20:28:15] VERSION_ID="7"
[2026-03-09 20:28:15] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-09 20:28:15] ANSI_COLOR="0;31"
[2026-03-09 20:28:15] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-09 20:28:15] HOME_URL="https://www.centos.org/"
[2026-03-09 20:28:15] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-09 20:28:15] 
[2026-03-09 20:28:15] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-09 20:28:15] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-09 20:28:15] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-09 20:28:15] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-09 20:28:15] 
[2026-03-09 20:28:15] 2026-03-09 19:27:44,226 | INFO     | **************************************
[2026-03-09 20:28:15] 2026-03-09 19:27:44,573 | WARNING  | process 822754 can no longer be monitored (due to stat problems) - aborting
[2026-03-09 20:28:15] 2026-03-09 19:27:44,730 | INFO     | executing command: df -mP /var/lib/boinc/var/slot208/slots/0
[2026-03-09 20:28:15] 2026-03-09 19:27:44,746 | INFO     | sufficient remaining disk space (18786287616 B)
[2026-03-09 20:28:15] 2026-03-09 19:27:44,746 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-09 20:28:15] 2026-03-09 19:27:44,746 | INFO     | current server update state: UPDATING_FINAL
[2026-03-09 20:28:15] 2026-03-09 19:27:44,746 | INFO     | update_server=False
[2026-03-09 20:28:15] 2026-03-09 19:27:44,746 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-09 20:28:15] 2026-03-09 19:27:44,747 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-09 20:28:15] 2026-03-09 19:27:44,795 | INFO     | all data control threads have been joined
[2026-03-09 20:28:15] 2026-03-09 19:27:44,860 | INFO     | using path: /var/lib/boinc/var/slot208/slots/0/memory_monitor_summary.json (trf name=prmon)
[2026-03-09 20:28:15] 2026-03-09 19:27:44,861 | INFO     | using path: /var/lib/boinc/var/slot208/slots/0/memory_monitor_summary.json (trf name=prmon)
[2026-03-09 20:28:15] 2026-03-09 19:27:44,861 | WARNING  | memory limits not set in config, using defaults: 'NoneType' object has no attribute 'get'
[2026-03-09 20:28:15] 2026-03-09 19:27:44,861 | WARNING  | maxPSS not found in memory monitor output
[2026-03-09 20:28:15] 2026-03-09 19:27:44,862 | INFO     | skipping file size check of payload stdout file (/var/lib/boinc/var/slot208/slots/0/PanDA_Pilot-7038524999/payload.stdout) since it has not been created yet
[2026-03-09 20:28:15] 2026-03-09 19:27:44,862 | INFO     | executing command: df -mP /var/lib/boinc/var/slot208/slots/0
[2026-03-09 20:28:15] 2026-03-09 19:27:44,877 | INFO     | sufficient remaining disk space (18786287616 B)
[2026-03-09 20:28:15] 2026-03-09 19:27:44,877 | WARNING  | skipping size check of workdir since it has not been created yet
[2026-03-09 20:28:15] 2026-03-09 19:27:44,877 | INFO     | output file size check: skipping output file /var/lib/boinc/var/slot208/slots/0/PanDA_Pilot-7038524999/HITS.48955015._001933.pool.root.1 since it does not exist
[2026-03-09 20:28:15] 2026-03-09 19:27:45,300 | INFO     | number of running child processes to parent process 822754: 1
[2026-03-09 20:28:15] 2026-03-09 19:27:45,300 | INFO     | maximum number of monitored processes: 6
[2026-03-09 20:28:15] 2026-03-09 19:27:45,300 | INFO     | aborting job monitoring since job object (job id=7038524999) has expired
[2026-03-09 20:28:15] 2026-03-09 19:27:45,301 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-09 20:28:15] 2026-03-09 19:27:45,301 | INFO     | will abort loop
[2026-03-09 20:28:15] 2026-03-09 19:27:45,521 | INFO     | all payload control threads have been joined
[2026-03-09 20:28:15] 2026-03-09 19:27:45,751 | INFO     | [job] retrieve thread has finished
[2026-03-09 20:28:15] 2026-03-09 19:27:45,800 | INFO     | [data] control thread has finished
[2026-03-09 20:28:15] 2026-03-09 19:27:45,849 | INFO     | [payload] failed_post thread has finished
[2026-03-09 20:28:15] 2026-03-09 19:27:46,281 | INFO     | [payload] execute_payloads thread has finished
[2026-03-09 20:28:15] 2026-03-09 19:27:46,290 | INFO     | [job] create_data_payload thread has finished
[2026-03-09 20:28:15] 2026-03-09 19:27:46,305 | INFO     | [job] job monitor thread has finished
[2026-03-09 20:28:15] 2026-03-09 19:27:46,313 | INFO     | all job control threads have been joined
[2026-03-09 20:28:15] 2026-03-09 19:27:46,371 | INFO     | [job] validate thread has finished
[2026-03-09 20:28:15] 2026-03-09 19:27:46,491 | INFO     | [payload] validate_pre thread has finished
[2026-03-09 20:28:15] 2026-03-09 19:27:46,526 | INFO     | [payload] control thread has finished
[2026-03-09 20:28:15] 2026-03-09 19:27:46,528 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-09 20:28:15] 2026-03-09 19:27:46,578 | INFO     | [data] copytool_in thread has finished
[2026-03-09 20:28:15] 2026-03-09 19:27:46,753 | INFO     | [data] copytool_out thread has finished
[2026-03-09 20:28:15] 2026-03-09 19:27:46,823 | INFO     | [payload] validate_post thread has finished
[2026-03-09 20:28:15] 2026-03-09 19:27:47,206 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-09 20:28:15] 2026-03-09 19:27:47,314 | INFO     | [job] control thread has finished
[2026-03-09 20:28:15] 2026-03-09 19:27:47,413 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-09 20:28:15] 2026-03-09 19:27:48,420 | INFO     | [job] queue monitor thread has finished
[2026-03-09 20:28:15] 2026-03-09 19:27:51,208 | INFO     | [data] queue_monitor thread has finished
[2026-03-09 20:28:15] 2026-03-09 19:28:10,523 | INFO     | [monitor] cgroup control has ended
[2026-03-09 20:28:15] 2026-03-09 19:28:10,623 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23175128766272)>', '<ExcThread(monitor, started 23174894073600)>']
[2026-03-09 20:28:15] 2026-03-09 19:28:14,107 | INFO     | PID=767070 has CPU usage=8.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-03-09 20:28:15] 2026-03-09 19:28:14,108 | INFO     | .. there are 57 such processes running
[2026-03-09 20:28:15] 2026-03-09 19:28:14,108 | INFO     | found 0 job(s) in 20 queues
[2026-03-09 20:28:15] 2026-03-09 19:28:14,108 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-09 20:28:15] 2026-03-09 19:28:14,108 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-09 20:28:15] 2026-03-09 19:28:14,108 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-09 20:28:15] 2026-03-09 19:28:14,108 | INFO     | [monitor] control thread has ended
[2026-03-09 20:28:15] 2026-03-09 19:28:15,648 | INFO     | all workflow threads have been joined
[2026-03-09 20:28:15] 2026-03-09 19:28:15,648 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-09 20:28:15] 2026-03-09 19:28:15,648 | INFO     | traces error code: 0
[2026-03-09 20:28:15] 2026-03-09 19:28:15,648 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-09 20:28:15] 2026-03-09 19:28:15,806 [wrapper] ==== pilot stdout END ====
[2026-03-09 20:28:15] 2026-03-09 19:28:15,808 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-09 20:28:15] 2026-03-09 19:28:15,812 [wrapper] pilotpid: 767070
[2026-03-09 20:28:15] 2026-03-09 19:28:15,814 [wrapper] Pilot exit status: 0
[2026-03-09 20:28:15] 2026-03-09 19:28:15,822 [wrapper] pandaids: 7038524999 7038524999
[2026-03-09 20:28:15] 2026-03-09 19:28:15,932 [wrapper] cleanup supervisor_pilot 1521579 767072
[2026-03-09 20:28:15] 2026-03-09 19:28:15,936 [wrapper] Test setup, not cleaning
[2026-03-09 20:28:15] 2026-03-09 19:28:15,938 [wrapper] apfmon messages muted
[2026-03-09 20:28:15] 2026-03-09 19:28:15,940 [wrapper] ==== wrapper stdout END ====
[2026-03-09 20:28:15] 2026-03-09 19:28:15,943 [wrapper] ==== wrapper stderr END ====
[2026-03-09 20:28:15]  *** Error codes and diagnostics ***
[2026-03-09 20:28:15]     "exeErrorCode": 0,
[2026-03-09 20:28:15]     "exeErrorDiag": "",
[2026-03-09 20:28:15]     "pilotErrorCode": 0,
[2026-03-09 20:28:15]     "pilotErrorDiag": "",
[2026-03-09 20:28:15]  *** Listing of results directory ***
[2026-03-09 20:28:15] total 1044976
[2026-03-09 20:28:15] drwx------. 5 boinc boinc      4096 Feb  2 16:00 pilot3
[2026-03-09 20:28:15] -rw-r--r--. 1 boinc boinc    584627 Mar  4 23:45 pilot3.tar.gz
[2026-03-09 20:28:15] -rwx------. 1 boinc boinc     36322 Mar  4 23:46 runpilot2-wrapper.sh
[2026-03-09 20:28:15] -rw-r--r--. 1 boinc boinc      5111 Mar  4 23:46 queuedata.json
[2026-03-09 20:28:15] -rw-r--r--. 1 boinc boinc       100 Mar  9 19:04 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-09 20:28:15] -rwxr-xr-x. 1 boinc boinc      7986 Mar  9 19:04 run_atlas
[2026-03-09 20:28:15] -rw-r--r--. 1 boinc boinc       105 Mar  9 19:04 job.xml
[2026-03-09 20:28:15] -rw-r--r--. 3 boinc boinc 442422571 Mar  9 19:05 EVNT.46701403._002082.pool.root.1
[2026-03-09 20:28:15] -rw-r--r--. 3 boinc boinc 442422571 Mar  9 19:05 ATLAS.root_0
[2026-03-09 20:28:15] -rw-r--r--. 2 boinc boinc     15845 Mar  9 19:05 start_atlas.sh
[2026-03-09 20:28:15] drwxrwx--x. 2 boinc boinc      4096 Mar  9 19:05 shared
[2026-03-09 20:28:15] -rw-r--r--. 2 boinc boinc    597949 Mar  9 19:05 input.tar.gz
[2026-03-09 20:28:15] -rw-r--r--. 1 boinc boinc         0 Mar  9 19:05 boinc_lockfile
[2026-03-09 20:28:15] -rw-------. 1 boinc boinc   1511578 Mar  9 19:05 agis_ddmendpoints.agis.ALL.json
[2026-03-09 20:28:15] -rw-r--r--. 1 boinc boinc      2568 Mar  9 19:13 pandaJob.out
[2026-03-09 20:28:15] -rw-------. 1 boinc boinc   1002716 Mar  9 19:14 agis_schedconf.cvmfs.json
[2026-03-09 20:28:15] -rw-------. 1 boinc boinc       445 Mar  9 19:14 workernode_map.json
[2026-03-09 20:28:15] -rw-r--r--. 1 boinc boinc      6712 Mar  9 19:14 init_data.xml
[2026-03-09 20:28:15] -rw-r--r--. 1 boinc boinc       531 Mar  9 20:27 boinc_task_state.xml
[2026-03-09 20:28:15] -rw-------. 1 boinc boinc 179393981 Mar  9 20:27 HITS.48955015._001933.pool.root.1
[2026-03-09 20:28:15] -rw-------. 1 boinc boinc      1028 Mar  9 20:27 memory_monitor_summary.json
[2026-03-09 20:28:15] -rw-------. 1 boinc boinc    285234 Mar  9 20:27 log.48955015._001933.job.log.tgz.1
[2026-03-09 20:28:15] -rw-------. 1 boinc boinc      6348 Mar  9 20:27 heartbeat.json
[2026-03-09 20:28:15] -rw-r--r--. 1 boinc boinc      8192 Mar  9 20:28 boinc_mmap_file
[2026-03-09 20:28:15] -rw-r--r--. 1 boinc boinc        27 Mar  9 20:28 wrapper_checkpoint.txt
[2026-03-09 20:28:15] -rw-------. 1 boinc boinc        96 Mar  9 20:28 pilot_heartbeat.json
[2026-03-09 20:28:15] -rw-------. 1 boinc boinc      6372 Mar  9 20:28 pilotlog.txt
[2026-03-09 20:28:15] -rw-------. 1 boinc boinc    653984 Mar  9 20:28 log.48955015._001933.job.log.1
[2026-03-09 20:28:15] -rw-------. 1 boinc boinc       357 Mar  9 20:28 output.list
[2026-03-09 20:28:15] -rw-r--r--. 1 boinc boinc       620 Mar  9 20:28 runtime_log
[2026-03-09 20:28:15] -rw-------. 1 boinc boinc    952320 Mar  9 20:28 result.tar.gz
[2026-03-09 20:28:15] -rw-r--r--. 1 boinc boinc      9298 Mar  9 20:28 runtime_log.err
[2026-03-09 20:28:15] -rw-------. 1 boinc boinc       787 Mar  9 20:28 PreKDmBAAI9nsSi4ap6QjLDmwznN0nGgGQJmIVkRDmm7LLDm2Dl2Lm.diag
[2026-03-09 20:28:15] -rw-r--r--. 1 boinc boinc     24032 Mar  9 20:28 stderr.txt
[2026-03-09 20:28:15] HITS file was successfully produced:
[2026-03-09 20:28:16] -rw-------. 1 boinc boinc 179393981 Mar  9 20:27 shared/HITS.pool.root.1
[2026-03-09 20:28:16]  *** Contents of shared directory: ***
[2026-03-09 20:28:16] total 608788
[2026-03-09 20:28:16] -rw-r--r--. 3 boinc boinc 442422571 Mar  9 19:05 ATLAS.root_0
[2026-03-09 20:28:16] -rw-r--r--. 2 boinc boinc     15845 Mar  9 19:05 start_atlas.sh
[2026-03-09 20:28:16] -rw-r--r--. 2 boinc boinc    597949 Mar  9 19:05 input.tar.gz
[2026-03-09 20:28:16] -rw-------. 1 boinc boinc 179393981 Mar  9 20:27 HITS.pool.root.1
[2026-03-09 20:28:16] -rw-------. 1 boinc boinc    952320 Mar  9 20:28 result.tar.gz
20:28:17 (755987): run_atlas exited; CPU time 17089.431678
20:28:17 (755987): called boinc_finish(0)

</stderr_txt>
]]>

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