Stderr output

<core_client_version>8.2.8</core_client_version>
<![CDATA[
<stderr_txt>
10:43:47 (943961): wrapper (7.7.26015): starting
10:43:47 (943961): wrapper: running run_atlas (--nthreads 12)
[2026-03-11 10:43:47] Arguments: --nthreads 12
[2026-03-11 10:43:47] Threads: 12
[2026-03-11 10:43:47] Checking for CVMFS
[2026-03-11 10:43:48] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-11 10:43:49] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-11 10:43:49] Running cvmfs_config stat atlas.cern.ch
[2026-03-11 10:43:50] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-11 10:43:50] 2.13.3.0 14504 9554 64828 157151 0 50 2768949 4096000 912 130560 0 2654476 99.975 360055 4876 http://s1ral-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.85.111:3128 1
[2026-03-11 10:43:50] CVMFS is ok
[2026-03-11 10:43:50] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-11 10:43:50] Checking for apptainer binary...
[2026-03-11 10:43:50] apptainer is not installed, using version from CVMFS
[2026-03-11 10:43:50] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-11 10:43:51] g6400
[2026-03-11 10:43:51] apptainer works
[2026-03-11 10:43:51] Set ATHENA_PROC_NUMBER=12
[2026-03-11 10:43:51] Set ATHENA_CORE_NUMBER=12
[2026-03-11 10:43:52] Starting ATLAS job with PandaID=7034261255
[2026-03-11 10:43:52] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/opt/boinc/instance_homes/boinc_31417/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-11 14:10:02]  *** The last 200 lines of the pilot log: ***
[2026-03-11 14:10:02] 2026-03-11 14:09:09,390 | INFO     | added worker_node to metadata from /opt/boinc/instance_homes/boinc_31417/slots/1/workernode_map.json
[2026-03-11 14:10:02] 2026-03-11 14:09:09,390 | INFO     | this job has now completed (state=finished)
[2026-03-11 14:10:02] 2026-03-11 14:09:09,390 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-03-11 14:10:02] 2026-03-11 14:09:09,390 | INFO     | log transfer has been attempted: DONE
[2026-03-11 14:10:02] 2026-03-11 14:09:09,390 | INFO     | job 7034261255 has finished - writing final server update
[2026-03-11 14:10:02] 2026-03-11 14:09:09,391 | INFO     | total number of processed events: 400 (read)
[2026-03-11 14:10:02] 2026-03-11 14:09:09,391 | INFO     | monitor loop #918: job 0:7034261255 is in state 'finished'
[2026-03-11 14:10:02] 2026-03-11 14:09:09,391 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-03-11 14:10:02] 2026-03-11 14:09:09,410 | INFO     | using path: /opt/boinc/instance_homes/boinc_31417/slots/1/PanDA_Pilot-7034261255/memory_monitor_summary.json (trf name=prmon)
[2026-03-11 14:10:02] 2026-03-11 14:09:09,410 | INFO     | extracted standard info from prmon json
[2026-03-11 14:10:02] 2026-03-11 14:09:09,410 | INFO     | extracted standard memory fields from prmon json
[2026-03-11 14:10:02] 2026-03-11 14:09:09,411 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-03-11 14:10:02] 2026-03-11 14:09:09,417 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-03-11 14:10:02] 2026-03-11 14:09:09,417 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-03-11 14:10:02] 2026-03-11 14:09:09,420 | INFO     | fitting pss+swap vs Time
[2026-03-11 14:10:02] 2026-03-11 14:09:09,420 | INFO     | sum of square deviations: 2443588874.9949784
[2026-03-11 14:10:02] 2026-03-11 14:09:09,421 | INFO     | sum of deviations: 40441943171.05524
[2026-03-11 14:10:02] 2026-03-11 14:09:09,421 | INFO     | mean x: 1773232062.0050251
[2026-03-11 14:10:02] 2026-03-11 14:09:09,433 | INFO     | mean y: 2603874.944723618
[2026-03-11 14:10:02] 2026-03-11 14:09:09,433 | INFO     | intersect: -29344783901.5067
[2026-03-11 14:10:02] 2026-03-11 14:09:09,434 | INFO     | chi2: 3.7711900642017824
[2026-03-11 14:10:02] 2026-03-11 14:09:09,434 | INFO     | sum of square deviations: 2263985812.494833
[2026-03-11 14:10:02] 2026-03-11 14:09:09,435 | INFO     | sum of deviations: 52461556471.804115
[2026-03-11 14:10:02] 2026-03-11 14:09:09,435 | INFO     | mean x: 1773231909.5051546
[2026-03-11 14:10:02] 2026-03-11 14:09:09,435 | INFO     | mean y: 2613848.6958762887
[2026-03-11 14:10:02] 2026-03-11 14:09:09,435 | INFO     | intersect: -41087089737.21033
[2026-03-11 14:10:02] 2026-03-11 14:09:09,435 | INFO     | chi2: 3.0859806263893623
[2026-03-11 14:10:02] 2026-03-11 14:09:09,435 | INFO     | current chi2=3.0859806263893623 (change=18.169581117557723 %)
[2026-03-11 14:10:02] 2026-03-11 14:09:09,435 | INFO     | right removable region: 193
[2026-03-11 14:10:02] 2026-03-11 14:09:09,436 | INFO     | sum of square deviations: 2263985202.494833
[2026-03-11 14:10:02] 2026-03-11 14:09:09,436 | INFO     | sum of deviations: -14473216231.01031
[2026-03-11 14:10:02] 2026-03-11 14:09:09,436 | INFO     | mean x: 1773232214.5051546
[2026-03-11 14:10:02] 2026-03-11 14:09:09,436 | INFO     | mean y: 2650313.5103092785
[2026-03-11 14:10:02] 2026-03-11 14:09:09,436 | INFO     | intersect: 11338578322.2469
[2026-03-11 14:10:02] 2026-03-11 14:09:09,437 | INFO     | chi2: 0.9970064680819557
[2026-03-11 14:10:02] 2026-03-11 14:09:09,437 | INFO     | current chi2=0.9970064680819557 (change=73.56255051830743 %)
[2026-03-11 14:10:02] 2026-03-11 14:09:09,437 | INFO     | sum of square deviations: 2093404954.9947045
[2026-03-11 14:10:02] 2026-03-11 14:09:09,450 | INFO     | sum of deviations: -24596585786.5291
[2026-03-11 14:10:02] 2026-03-11 14:09:09,450 | INFO     | mean x: 1773232367.005291
[2026-03-11 14:10:02] 2026-03-11 14:09:09,450 | INFO     | mean y: 2659308.529100529
[2026-03-11 14:10:02] 2026-03-11 14:09:09,450 | INFO     | intersect: 20837358266.526943
[2026-03-11 14:10:02] 2026-03-11 14:09:09,450 | INFO     | chi2: 0.8792604979257337
[2026-03-11 14:10:02] 2026-03-11 14:09:09,450 | INFO     | current chi2=0.8792604979257337 (change=11.809950479332606 %)
[2026-03-11 14:10:02] 2026-03-11 14:09:09,450 | INFO     | left removable region: 20
[2026-03-11 14:10:02] 2026-03-11 14:09:09,451 | INFO     | sum of square deviations: 1605477422.994215
[2026-03-11 14:10:02] 2026-03-11 14:09:09,451 | INFO     | sum of deviations: 4085762433.8497114
[2026-03-11 14:10:02] 2026-03-11 14:09:09,451 | INFO     | mean x: 1773232489.0057805
[2026-03-11 14:10:02] 2026-03-11 14:09:09,452 | INFO     | mean y: 2654987.1502890172
[2026-03-11 14:10:02] 2026-03-11 14:09:09,452 | INFO     | intersect: -4510025531.613846
[2026-03-11 14:10:02] 2026-03-11 14:09:09,452 | INFO     | chi2: 0.023254172184378183
[2026-03-11 14:10:02] 2026-03-11 14:09:09,452 | INFO     | current memory leak: 2.54 B/s (using 173 data points, chi2=0.02)
[2026-03-11 14:10:02] 2026-03-11 14:09:09,452 | INFO     | could have reported an average CPU frequency of 3999 MHz (10 samples)
[2026-03-11 14:10:02] 2026-03-11 14:09:09,452 | INFO     | ..............................
[2026-03-11 14:10:02] 2026-03-11 14:09:09,452 | INFO     | . Timing measurements:
[2026-03-11 14:10:02] 2026-03-11 14:09:09,452 | INFO     | . get job = 0 s
[2026-03-11 14:10:02] 2026-03-11 14:09:09,452 | INFO     | . initial setup = 36 s
[2026-03-11 14:10:02] 2026-03-11 14:09:09,453 | INFO     | . payload setup = 48 s
[2026-03-11 14:10:02] 2026-03-11 14:09:09,453 | INFO     | . stage-in = 0 s
[2026-03-11 14:10:02] 2026-03-11 14:09:09,453 | INFO     | . payload execution = 12141 s
[2026-03-11 14:10:02] 2026-03-11 14:09:09,453 | INFO     | . stage-out = 3 s
[2026-03-11 14:10:02] 2026-03-11 14:09:09,453 | INFO     | . log creation = 0 s
[2026-03-11 14:10:02] 2026-03-11 14:09:09,453 | INFO     | ..............................
[2026-03-11 14:10:02] 2026-03-11 14:09:09,702 | INFO     | 
[2026-03-11 14:10:02] 2026-03-11 14:09:09,702 | INFO     | job summary report
[2026-03-11 14:10:02] 2026-03-11 14:09:09,702 | INFO     | --------------------------------------------------
[2026-03-11 14:10:02] 2026-03-11 14:09:09,702 | INFO     | PanDA job id: 7034261255
[2026-03-11 14:10:02] 2026-03-11 14:09:09,702 | INFO     | task id: 48700938
[2026-03-11 14:10:02] 2026-03-11 14:09:09,702 | INFO     | errors: (none)
[2026-03-11 14:10:02] 2026-03-11 14:09:09,702 | INFO     | status: LOG_TRANSFER = DONE 
[2026-03-11 14:10:02] 2026-03-11 14:09:09,703 | INFO     | pilot state: finished 
[2026-03-11 14:10:02] 2026-03-11 14:09:09,703 | INFO     | transexitcode: 0
[2026-03-11 14:10:02] 2026-03-11 14:09:09,703 | INFO     | exeerrorcode: 0
[2026-03-11 14:10:02] 2026-03-11 14:09:09,703 | INFO     | exeerrordiag: 
[2026-03-11 14:10:02] 2026-03-11 14:09:09,703 | INFO     | exitcode: 0
[2026-03-11 14:10:02] 2026-03-11 14:09:09,703 | INFO     | exitmsg: OK
[2026-03-11 14:10:02] 2026-03-11 14:09:09,703 | INFO     | cpuconsumptiontime: 24668 s
[2026-03-11 14:10:02] 2026-03-11 14:09:09,703 | INFO     | nevents: 400
[2026-03-11 14:10:02] 2026-03-11 14:09:09,703 | INFO     | neventsw: 0
[2026-03-11 14:10:02] 2026-03-11 14:09:09,703 | INFO     | pid: 952344
[2026-03-11 14:10:02] 2026-03-11 14:09:09,703 | INFO     | pgrp: 952344
[2026-03-11 14:10:02] 2026-03-11 14:09:09,703 | INFO     | corecount: 12
[2026-03-11 14:10:02] 2026-03-11 14:09:09,703 | INFO     | event service: False
[2026-03-11 14:10:02] 2026-03-11 14:09:09,703 | INFO     | sizes: {0: 2279063, 1: 2279771, 2: 2280232, 13: 2280232, 12194: 2309955, 12198: 2318999, 12201: 2319377}
[2026-03-11 14:10:02] 2026-03-11 14:09:09,703 | INFO     | --------------------------------------------------
[2026-03-11 14:10:02] 2026-03-11 14:09:09,703 | INFO     | 
[2026-03-11 14:10:02] 2026-03-11 14:09:09,704 | INFO     | executing command: ls -lF /opt/boinc/instance_homes/boinc_31417/slots/1
[2026-03-11 14:10:02] 2026-03-11 14:09:09,780 | INFO     | queue jobs had 0 job(s) [purged]
[2026-03-11 14:10:02] 2026-03-11 14:09:09,781 | INFO     | queue payloads had 0 job(s) [purged]
[2026-03-11 14:10:02] 2026-03-11 14:09:09,781 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-11 14:10:02] 2026-03-11 14:09:09,782 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-11 14:10:02] 2026-03-11 14:09:09,782 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-11 14:10:02] 2026-03-11 14:09:09,782 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-11 14:10:02] 2026-03-11 14:09:09,782 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-11 14:10:02] 2026-03-11 14:09:09,782 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-11 14:10:02] 2026-03-11 14:09:09,782 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-11 14:10:02] 2026-03-11 14:09:09,783 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-11 14:10:02] 2026-03-11 14:09:09,784 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-11 14:10:02] 2026-03-11 14:09:09,784 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-11 14:10:02] 2026-03-11 14:09:09,784 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-11 14:10:02] 2026-03-11 14:09:09,785 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-11 14:10:02] 2026-03-11 14:09:09,785 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-11 14:10:02] 2026-03-11 14:09:09,785 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-11 14:10:02] 2026-03-11 14:09:09,786 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-11 14:10:02] 2026-03-11 14:09:09,787 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-11 14:10:02] 2026-03-11 14:09:09,787 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-11 14:10:02] 2026-03-11 14:09:09,787 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-11 14:10:02] 2026-03-11 14:09:09,787 | INFO     | job 7034261255 has completed (purged errors)
[2026-03-11 14:10:02] 2026-03-11 14:09:09,787 | INFO     | overall cleanup function is called
[2026-03-11 14:10:02] 2026-03-11 14:09:10,797 | INFO     | --- collectZombieJob: --- 10, [952344]
[2026-03-11 14:10:02] 2026-03-11 14:09:10,797 | INFO     | zombie collector waiting for pid 952344
[2026-03-11 14:10:02] 2026-03-11 14:09:10,797 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-11 14:10:02] 2026-03-11 14:09:10,798 | INFO     | collected zombie processes
[2026-03-11 14:10:02] 2026-03-11 14:09:10,798 | INFO     | will attempt to kill all subprocesses of pid=952344
[2026-03-11 14:10:02] 2026-03-11 14:09:10,950 | INFO     | process IDs to be killed: [952344] (in reverse order)
[2026-03-11 14:10:02] 2026-03-11 14:09:11,078 | WARNING  | found no corresponding commands to process id(s)
[2026-03-11 14:10:02] 2026-03-11 14:09:11,078 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-11 14:10:02] 2026-03-11 14:09:11,079 | INFO     | did not find any defunct processes belonging to 952344
[2026-03-11 14:10:02] 2026-03-11 14:09:11,080 | INFO     | did not find any defunct processes belonging to 952344
[2026-03-11 14:10:02] 2026-03-11 14:09:11,080 | INFO     | ready for new job
[2026-03-11 14:10:02] 2026-03-11 14:09:11,080 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-11 14:10:02] 2026-03-11 14:09:11,093 | INFO     | **************************************
[2026-03-11 14:10:02] 2026-03-11 14:09:11,093 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-03-11 14:10:02] 2026-03-11 14:09:11,093 | INFO     | **************************************
[2026-03-11 14:10:02] 2026-03-11 14:09:11,095 | INFO     | 
[2026-03-11 14:10:02] 2026-03-11 14:09:11,114 | INFO     | architecture information:
[2026-03-11 14:10:02] 2026-03-11 14:09:11,115 | INFO     | executing command: cat /etc/os-release
[2026-03-11 14:10:02] 2026-03-11 14:09:11,193 | INFO     | cat /etc/os-release:
[2026-03-11 14:10:02] NAME="CentOS Linux"
[2026-03-11 14:10:02] VERSION="7 (Core)"
[2026-03-11 14:10:02] ID="centos"
[2026-03-11 14:10:02] ID_LIKE="rhel fedora"
[2026-03-11 14:10:02] VERSION_ID="7"
[2026-03-11 14:10:02] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-11 14:10:02] ANSI_COLOR="0;31"
[2026-03-11 14:10:02] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-11 14:10:02] HOME_URL="https://www.centos.org/"
[2026-03-11 14:10:02] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-11 14:10:02] 
[2026-03-11 14:10:02] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-11 14:10:02] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-11 14:10:02] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-11 14:10:02] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-11 14:10:02] 
[2026-03-11 14:10:02] 2026-03-11 14:09:11,194 | INFO     | **************************************
[2026-03-11 14:10:02] 2026-03-11 14:09:11,696 | INFO     | executing command: df -mP /opt/boinc/instance_homes/boinc_31417/slots/1
[2026-03-11 14:10:02] 2026-03-11 14:09:11,725 | INFO     | sufficient remaining disk space (192825786368 B)
[2026-03-11 14:10:02] 2026-03-11 14:09:11,726 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-11 14:10:02] 2026-03-11 14:09:11,726 | INFO     | current server update state: UPDATING_FINAL
[2026-03-11 14:10:02] 2026-03-11 14:09:11,726 | INFO     | update_server=False
[2026-03-11 14:10:02] 2026-03-11 14:09:11,726 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-11 14:10:02] 2026-03-11 14:09:11,726 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-11 14:10:02] 2026-03-11 14:09:11,900 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-03-11 14:10:02] 2026-03-11 14:09:11,900 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-03-11 14:10:02] 2026-03-11 14:09:11,900 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-11 14:10:02] 2026-03-11 14:09:11,900 | INFO     | will abort loop
[2026-03-11 14:10:02] 2026-03-11 14:09:12,121 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-11 14:10:02] 2026-03-11 14:09:12,165 | INFO     | all data control threads have been joined
[2026-03-11 14:10:02] 2026-03-11 14:09:12,733 | INFO     | [job] retrieve thread has finished
[2026-03-11 14:10:02] 2026-03-11 14:09:12,821 | INFO     | [payload] validate_pre thread has finished
[2026-03-11 14:10:02] 2026-03-11 14:09:12,901 | INFO     | [job] validate thread has finished
[2026-03-11 14:10:02] 2026-03-11 14:09:12,905 | INFO     | [job] job monitor thread has finished
[2026-03-11 14:10:02] 2026-03-11 14:09:13,169 | INFO     | [data] control thread has finished
[2026-03-11 14:10:02] 2026-03-11 14:09:13,217 | INFO     | all job control threads have been joined
[2026-03-11 14:10:02] 2026-03-11 14:09:13,249 | INFO     | all payload control threads have been joined
[2026-03-11 14:10:02] 2026-03-11 14:09:13,421 | INFO     | [payload] validate_post thread has finished
[2026-03-11 14:10:02] 2026-03-11 14:09:13,481 | INFO     | [payload] failed_post thread has finished
[2026-03-11 14:10:02] 2026-03-11 14:09:13,619 | INFO     | [data] copytool_in thread has finished
[2026-03-11 14:10:02] 2026-03-11 14:09:13,814 | INFO     | [job] create_data_payload thread has finished
[2026-03-11 14:10:02] 2026-03-11 14:09:14,025 | INFO     | [payload] execute_payloads thread has finished
[2026-03-11 14:10:02] 2026-03-11 14:09:14,129 | INFO     | [data] copytool_out thread has finished
[2026-03-11 14:10:02] 2026-03-11 14:09:14,221 | INFO     | [job] control thread has finished
[2026-03-11 14:10:02] 2026-03-11 14:09:14,257 | INFO     | [payload] control thread has finished
[2026-03-11 14:10:02] 2026-03-11 14:09:14,717 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-11 14:10:02] 2026-03-11 14:09:15,721 | INFO     | [job] queue monitor thread has finished
[2026-03-11 14:10:02] 2026-03-11 14:09:15,741 | INFO     | [data] queue_monitor thread has finished
[2026-03-11 14:10:02] 2026-03-11 14:09:21,821 | INFO     | job.realtimelogging is not enabled
[2026-03-11 14:10:02] 2026-03-11 14:09:22,825 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-11 14:10:02] 2026-03-11 14:09:42,383 | INFO     | PID=947963 has CPU usage=2.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-03-11 14:10:02] 2026-03-11 14:09:42,383 | INFO     | .. there are 2 such processes running
[2026-03-11 14:10:02] 2026-03-11 14:09:42,383 | INFO     | found 0 job(s) in 20 queues
[2026-03-11 14:10:02] 2026-03-11 14:09:42,383 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-11 14:10:02] 2026-03-11 14:09:42,383 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-11 14:10:02] 2026-03-11 14:09:55,346 | INFO     | [monitor] cgroup control has ended
[2026-03-11 14:10:02] 2026-03-11 14:09:56,069 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140079911163712)>', '<ExcThread(monitor, started 140079477548800)>']
[2026-03-11 14:10:02] 2026-03-11 14:09:56,445 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-11 14:10:02] 2026-03-11 14:09:56,445 | INFO     | [monitor] control thread has ended
[2026-03-11 14:10:02] 2026-03-11 14:10:01,093 | INFO     | all workflow threads have been joined
[2026-03-11 14:10:02] 2026-03-11 14:10:01,093 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-11 14:10:02] 2026-03-11 14:10:01,094 | INFO     | traces error code: 0
[2026-03-11 14:10:02] 2026-03-11 14:10:01,094 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-11 14:10:02] 2026-03-11 14:10:01,529 [wrapper] ==== pilot stdout END ====
[2026-03-11 14:10:02] 2026-03-11 14:10:01,542 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-11 14:10:02] 2026-03-11 14:10:01,562 [wrapper] pilotpid: 947963
[2026-03-11 14:10:02] 2026-03-11 14:10:01,578 [wrapper] Pilot exit status: 0
[2026-03-11 14:10:02] 2026-03-11 14:10:01,660 [wrapper] pandaids: 7034261255
[2026-03-11 14:10:02] 2026-03-11 14:10:01,734 [wrapper] cleanup supervisor_pilot  971508 947964
[2026-03-11 14:10:02] 2026-03-11 14:10:01,741 [wrapper] Test setup, not cleaning
[2026-03-11 14:10:02] 2026-03-11 14:10:01,747 [wrapper] apfmon messages muted
[2026-03-11 14:10:02] 2026-03-11 14:10:01,773 [wrapper] ==== wrapper stdout END ====
[2026-03-11 14:10:02] 2026-03-11 14:10:01,803 [wrapper] ==== wrapper stderr END ====
[2026-03-11 14:10:02]  *** Error codes and diagnostics ***
[2026-03-11 14:10:02]     "exeErrorCode": 0,
[2026-03-11 14:10:02]     "exeErrorDiag": "",
[2026-03-11 14:10:02]     "pilotErrorCode": 0,
[2026-03-11 14:10:02]     "pilotErrorDiag": "",
[2026-03-11 14:10:02]  *** Listing of results directory ***
[2026-03-11 14:10:02] total 338852
[2026-03-11 14:10:02] -rw-r--r-- 1 boinc boinc    584627 Mar  1 02:30 pilot3.tar.gz
[2026-03-11 14:10:02] -rwx------ 1 boinc boinc     36322 Mar  1 02:31 runpilot2-wrapper.sh
[2026-03-11 14:10:02] -rw-r--r-- 1 boinc boinc      5111 Mar  1 02:31 queuedata.json
[2026-03-11 14:10:02] -rw-rw-r-- 1 boinc boinc       100 Mar 11 10:43 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-11 14:10:02] -rwxr-xr-x 1 boinc boinc      7986 Mar 11 10:43 run_atlas
[2026-03-11 14:10:02] -rw-rw-r-- 1 boinc boinc       105 Mar 11 10:43 job.xml
[2026-03-11 14:10:02] -rw-r--r-- 2 boinc boinc 192324493 Mar 11 10:43 EVNT.48700936._000069.pool.root.1
[2026-03-11 14:10:02] drwxrwx--x 2 boinc boinc      4096 Mar 11 10:43 shared
[2026-03-11 14:10:02] -rw-r--r-- 2 boinc boinc    597933 Mar 11 10:43 input.tar.gz
[2026-03-11 14:10:02] -rw-r--r-- 2 boinc boinc     15845 Mar 11 10:43 start_atlas.sh
[2026-03-11 14:10:02] -rw-rw-r-- 1 boinc boinc      9478 Mar 11 10:43 init_data.xml
[2026-03-11 14:10:02] -rw-rw-r-- 1 boinc boinc         0 Mar 11 10:43 boinc_setup_complete
[2026-03-11 14:10:02] -rw-rw-r-- 1 boinc boinc         0 Mar 11 10:43 boinc_lockfile
[2026-03-11 14:10:02] -rw-rw-r-- 1 boinc boinc      2499 Mar 11 10:43 pandaJob.out
[2026-03-11 14:10:02] -rw------- 1 boinc boinc   1007007 Mar 11 10:44 agis_schedconf.cvmfs.json
[2026-03-11 14:10:02] -rw------- 1 boinc boinc       419 Mar 11 10:45 workernode_map.json
[2026-03-11 14:10:02] drwx------ 5 boinc boinc      4096 Mar 11 10:45 pilot3
[2026-03-11 14:10:02] -rw------- 1 boinc boinc 146171417 Mar 11 14:07 HITS.48700938._001395.pool.root.1
[2026-03-11 14:10:02] -rw-rw-r-- 1 boinc boinc       530 Mar 11 14:08 boinc_task_state.xml
[2026-03-11 14:10:02] -rw------- 1 boinc boinc      1025 Mar 11 14:08 memory_monitor_summary.json
[2026-03-11 14:10:02] -rw------- 1 boinc boinc   1511578 Mar 11 14:09 agis_ddmendpoints.agis.ALL.json
[2026-03-11 14:10:02] -rw------- 1 boinc boinc    501683 Mar 11 14:09 log.48700938._001395.job.log.tgz.1
[2026-03-11 14:10:02] -rw------- 1 boinc boinc      6315 Mar 11 14:09 heartbeat.json
[2026-03-11 14:10:02] -rw------- 1 boinc boinc        95 Mar 11 14:09 pilot_heartbeat.json
[2026-03-11 14:10:02] -rw-rw-r-- 1 boinc boinc      8192 Mar 11 14:09 boinc_mmap_file
[2026-03-11 14:10:02] -rw-rw-r-- 1 boinc boinc        28 Mar 11 14:09 wrapper_checkpoint.txt
[2026-03-11 14:10:02] -rw------- 1 boinc boinc      5100 Mar 11 14:10 pilotlog.txt
[2026-03-11 14:10:02] -rw------- 1 boinc boinc   1771338 Mar 11 14:10 log.48700938._001395.job.log.1
[2026-03-11 14:10:02] -rw------- 1 boinc boinc       357 Mar 11 14:10 output.list
[2026-03-11 14:10:02] -rw-rw-r-- 1 boinc boinc       620 Mar 11 14:10 runtime_log
[2026-03-11 14:10:02] -rw------- 1 boinc boinc   2293760 Mar 11 14:10 result.tar.gz
[2026-03-11 14:10:02] -rw-rw-r-- 1 boinc boinc      9152 Mar 11 14:10 runtime_log.err
[2026-03-11 14:10:02] -rw------- 1 boinc boinc       652 Mar 11 14:10 3xYLDmVllG9n9Rq4apOajLDm4fhM0noT9bVooX4SDmTr6KDmYWZ9xn.diag
[2026-03-11 14:10:02] -rw-rw-r-- 1 boinc boinc     21099 Mar 11 14:10 stderr.txt
[2026-03-11 14:10:02] HITS file was successfully produced:
[2026-03-11 14:10:02] -rw------- 1 boinc boinc 146171417 Mar 11 14:07 shared/HITS.pool.root.1
[2026-03-11 14:10:02]  *** Contents of shared directory: ***
[2026-03-11 14:10:02] total 333412
[2026-03-11 14:10:02] -rw-r--r-- 2 boinc boinc 192324493 Mar 11 10:43 ATLAS.root_0
[2026-03-11 14:10:02] -rw-r--r-- 2 boinc boinc    597933 Mar 11 10:43 input.tar.gz
[2026-03-11 14:10:02] -rw-r--r-- 2 boinc boinc     15845 Mar 11 10:43 start_atlas.sh
[2026-03-11 14:10:02] -rw------- 1 boinc boinc 146171417 Mar 11 14:07 HITS.pool.root.1
[2026-03-11 14:10:02] -rw------- 1 boinc boinc   2293760 Mar 11 14:10 result.tar.gz
14:10:03 (943961): run_atlas exited; CPU time 24704.559196
14:10:03 (943961): called boinc_finish(0)

</stderr_txt>
]]>

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