Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
16:48:57 (717890): wrapper (7.7.26015): starting
16:48:57 (717890): wrapper: running run_atlas (--nthreads 2)
[2026-03-08 16:48:57] Arguments: --nthreads 2
[2026-03-08 16:48:57] Threads: 2
[2026-03-08 16:48:57] Checking for CVMFS
[2026-03-08 16:48:57] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-08 16:48:58] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-08 16:48:58] Running cvmfs_config stat atlas.cern.ch
[2026-03-08 16:48:58] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-08 16:48:58] 2.9.2.0 3393 7653 60848 157044 2 49 27053271 36864000 0 130560 0 2090732 99.976 280204 10826 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-03-08 16:48:58] CVMFS is ok
[2026-03-08 16:48:58] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-08 16:48:58] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-08 16:48:58] Further information can be found at the LHC@home message board.
[2026-03-08 16:48:58] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-08 16:48:58] Checking for apptainer binary...
[2026-03-08 16:48:58] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-08 16:48:58] Running /usr/bin/apptainer --version
[2026-03-08 16:48:58] apptainer version 1.4.1-1.1
[2026-03-08 16:48:58] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-08 16:48:58] thA337
[2026-03-08 16:48:58] apptainer works
[2026-03-08 16:48:58] Set ATHENA_PROC_NUMBER=2
[2026-03-08 16:48:58] Set ATHENA_CORE_NUMBER=2
[2026-03-08 16:48:58] Starting ATLAS job with PandaID=7039378585
[2026-03-08 16:48:58] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-08 18:40:35]  *** The last 200 lines of the pilot log: ***
[2026-03-08 18:40:35] 2026-03-08 17:40:00,107 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-08 18:40:35] 2026-03-08 17:40:00,107 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-08 18:40:35] 2026-03-08 17:40:00,107 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-08 18:40:35] 2026-03-08 17:40:00,107 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-08 18:40:35] 2026-03-08 17:40:00,107 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-08 18:40:35] 2026-03-08 17:40:00,108 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-08 18:40:35] 2026-03-08 17:40:00,108 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-08 18:40:35] 2026-03-08 17:40:00,108 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-08 18:40:35] 2026-03-08 17:40:00,108 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-08 18:40:35] 2026-03-08 17:40:00,108 | INFO     | job 7039378585 has completed (purged errors)
[2026-03-08 18:40:35] 2026-03-08 17:40:00,109 | INFO     | overall cleanup function is called
[2026-03-08 18:40:35] 2026-03-08 17:40:01,117 | INFO     | --- collectZombieJob: --- 10, [726321]
[2026-03-08 18:40:35] 2026-03-08 17:40:01,118 | INFO     | zombie collector waiting for pid 726321
[2026-03-08 18:40:35] 2026-03-08 17:40:01,118 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-08 18:40:35] 2026-03-08 17:40:01,118 | INFO     | collected zombie processes
[2026-03-08 18:40:35] 2026-03-08 17:40:01,118 | INFO     | will attempt to kill all subprocesses of pid=726321
[2026-03-08 18:40:35] 2026-03-08 17:40:01,193 | INFO     | process IDs to be killed: [726321] (in reverse order)
[2026-03-08 18:40:35] 2026-03-08 17:40:01,213 | WARNING  | found no corresponding commands to process id(s)
[2026-03-08 18:40:35] 2026-03-08 17:40:01,214 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-08 18:40:35] 2026-03-08 17:40:01,214 | INFO     | did not find any defunct processes belonging to 726321
[2026-03-08 18:40:35] 2026-03-08 17:40:01,215 | INFO     | did not find any defunct processes belonging to 726321
[2026-03-08 18:40:35] 2026-03-08 17:40:01,215 | INFO     | ready for new job
[2026-03-08 18:40:35] 2026-03-08 17:40:01,215 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-08 18:40:35] 2026-03-08 17:40:01,215 | INFO     | **************************************
[2026-03-08 18:40:35] 2026-03-08 17:40:01,216 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-03-08 18:40:35] 2026-03-08 17:40:01,216 | INFO     | **************************************
[2026-03-08 18:40:35] 2026-03-08 17:40:01,216 | INFO     | 
[2026-03-08 18:40:35] 2026-03-08 17:40:01,216 | INFO     | architecture information:
[2026-03-08 18:40:35] 2026-03-08 17:40:01,216 | INFO     | executing command: cat /etc/os-release
[2026-03-08 18:40:35] 2026-03-08 17:40:01,224 | INFO     | cat /etc/os-release:
[2026-03-08 18:40:35] NAME="CentOS Linux"
[2026-03-08 18:40:35] VERSION="7 (Core)"
[2026-03-08 18:40:35] ID="centos"
[2026-03-08 18:40:35] ID_LIKE="rhel fedora"
[2026-03-08 18:40:35] VERSION_ID="7"
[2026-03-08 18:40:35] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-08 18:40:35] ANSI_COLOR="0;31"
[2026-03-08 18:40:35] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-08 18:40:35] HOME_URL="https://www.centos.org/"
[2026-03-08 18:40:35] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-08 18:40:35] 
[2026-03-08 18:40:35] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-08 18:40:35] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-08 18:40:35] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-08 18:40:35] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-08 18:40:35] 
[2026-03-08 18:40:35] 2026-03-08 17:40:01,225 | INFO     | **************************************
[2026-03-08 18:40:35] 2026-03-08 17:40:01,728 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-03-08 18:40:35] 2026-03-08 17:40:01,740 | INFO     | sufficient remaining disk space (482860859392 B)
[2026-03-08 18:40:35] 2026-03-08 17:40:01,740 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-08 18:40:35] 2026-03-08 17:40:01,740 | INFO     | current server update state: UPDATING_FINAL
[2026-03-08 18:40:35] 2026-03-08 17:40:01,740 | INFO     | update_server=False
[2026-03-08 18:40:35] 2026-03-08 17:40:01,740 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-08 18:40:35] 2026-03-08 17:40:01,740 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-08 18:40:35] 2026-03-08 17:40:01,741 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-08 18:40:35] 2026-03-08 17:40:01,741 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-08 18:40:35] 2026-03-08 17:40:01,741 | INFO     | aborting loop
[2026-03-08 18:40:35] 2026-03-08 17:40:02,415 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-08 18:40:35] 2026-03-08 17:40:02,481 | INFO     | all data control threads have been joined
[2026-03-08 18:40:35] 2026-03-08 17:40:02,498 | INFO     | all payload control threads have been joined
[2026-03-08 18:40:35] 2026-03-08 17:40:02,560 | INFO     | all job control threads have been joined
[2026-03-08 18:40:35] 2026-03-08 17:40:02,746 | INFO     | [job] queue monitor thread has finished
[2026-03-08 18:40:35] 2026-03-08 17:40:02,747 | INFO     | [job] retrieve thread has finished
[2026-03-08 18:40:35] 2026-03-08 17:40:02,747 | INFO     | [job] job monitor thread has finished
[2026-03-08 18:40:35] 2026-03-08 17:40:02,805 | INFO     | [payload] execute_payloads thread has finished
[2026-03-08 18:40:35] 2026-03-08 17:40:02,815 | INFO     | [payload] failed_post thread has finished
[2026-03-08 18:40:35] 2026-03-08 17:40:02,839 | INFO     | [payload] validate_pre thread has finished
[2026-03-08 18:40:35] 2026-03-08 17:40:02,865 | INFO     | [job] create_data_payload thread has finished
[2026-03-08 18:40:35] 2026-03-08 17:40:03,004 | INFO     | [data] copytool_in thread has finished
[2026-03-08 18:40:35] 2026-03-08 17:40:03,328 | INFO     | [payload] validate_post thread has finished
[2026-03-08 18:40:35] 2026-03-08 17:40:03,486 | INFO     | [data] control thread has finished
[2026-03-08 18:40:35] 2026-03-08 17:40:03,503 | INFO     | [payload] control thread has finished
[2026-03-08 18:40:35] 2026-03-08 17:40:03,566 | INFO     | [job] control thread has finished
[2026-03-08 18:40:35] 2026-03-08 17:40:04,149 | INFO     | [job] validate thread has finished
[2026-03-08 18:40:35] 2026-03-08 17:40:04,422 | INFO     | [data] copytool_out thread has finished
[2026-03-08 18:40:35] 2026-03-08 17:40:05,747 | INFO     | [data] queue_monitor thread has finished
[2026-03-08 18:40:35] 2026-03-08 17:40:12,790 | INFO     | job.realtimelogging is not enabled
[2026-03-08 18:40:35] 2026-03-08 17:40:13,796 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-08 18:40:35] 2026-03-08 17:40:29,800 | INFO     | [monitor] cgroup control has ended
[2026-03-08 18:40:35] 2026-03-08 17:40:30,249 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140220127156032)>', '<ExcThread(monitor, started 140219273705216)>']
[2026-03-08 18:40:35] 2026-03-08 17:40:32,147 | INFO     | PID=721913 has CPU usage=1.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-03-08 18:40:35] 2026-03-08 17:40:32,147 | INFO     | found 0 job(s) in 20 queues
[2026-03-08 18:40:35] 2026-03-08 17:40:32,147 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-08 18:40:35] 2026-03-08 17:40:32,147 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-08 18:40:35] 2026-03-08 17:40:32,147 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-08 18:40:35] 2026-03-08 17:40:32,147 | INFO     | [monitor] control thread has ended
[2026-03-08 18:40:35] 2026-03-08 17:40:35,275 | INFO     | all workflow threads have been joined
[2026-03-08 18:40:35] 2026-03-08 17:40:35,275 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-08 18:40:35] 2026-03-08 17:40:35,276 | INFO     | traces error code: 0
[2026-03-08 18:40:35] 2026-03-08 17:40:35,276 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-08 18:40:35] 2026-03-08 17:40:35,318 [wrapper] ==== pilot stdout END ====
[2026-03-08 18:40:35] 2026-03-08 17:40:35,321 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-08 18:40:35] 2026-03-08 17:40:35,324 [wrapper] pilotpid: 721913
[2026-03-08 18:40:35] 2026-03-08 17:40:35,326 [wrapper] Pilot exit status: 0
[2026-03-08 18:40:35] 2026-03-08 17:40:35,332 [wrapper] pandaids: 7039378585
[2026-03-08 18:40:35] 2026-03-08 17:40:35,345 [wrapper] cleanup supervisor_pilot  731343 721914
[2026-03-08 18:40:35] 2026-03-08 17:40:35,347 [wrapper] Test setup, not cleaning
[2026-03-08 18:40:35] 2026-03-08 17:40:35,349 [wrapper] apfmon messages muted
[2026-03-08 18:40:35] 2026-03-08 17:40:35,351 [wrapper] ==== wrapper stdout END ====
[2026-03-08 18:40:35] 2026-03-08 17:40:35,353 [wrapper] ==== wrapper stderr END ====
[2026-03-08 18:40:35]  *** Error codes and diagnostics ***
[2026-03-08 18:40:35]     "exeErrorCode": 0,
[2026-03-08 18:40:35]     "exeErrorDiag": "",
[2026-03-08 18:40:35]     "pilotErrorCode": 0,
[2026-03-08 18:40:35]     "pilotErrorDiag": "",
[2026-03-08 18:40:35]  *** Listing of results directory ***
[2026-03-08 18:40:35] total 614492
[2026-03-08 18:40:35] -rw-r--r-- 1 boinc boinc    584627 Mar  8 02:40 pilot3.tar.gz
[2026-03-08 18:40:35] -rw-r--r-- 1 boinc boinc      5111 Mar  8 02:42 queuedata.json
[2026-03-08 18:40:35] -rwx------ 1 boinc boinc     36322 Mar  8 02:43 runpilot2-wrapper.sh
[2026-03-08 18:40:35] -rw-r--r-- 1 boinc boinc       100 Mar  8 16:48 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-08 18:40:35] -rwxr-xr-x 1 boinc boinc      7986 Mar  8 16:48 run_atlas
[2026-03-08 18:40:35] -rw-r--r-- 1 boinc boinc       105 Mar  8 16:48 job.xml
[2026-03-08 18:40:35] -rw-r--r-- 2 boinc boinc 442524941 Mar  8 16:48 EVNT.46701403._000438.pool.root.1
[2026-03-08 18:40:35] -rw-r--r-- 2 boinc boinc    597956 Mar  8 16:48 input.tar.gz
[2026-03-08 18:40:35] -rw-r--r-- 2 boinc boinc     15845 Mar  8 16:48 start_atlas.sh
[2026-03-08 18:40:35] drwxrwx--x 2 boinc boinc      4096 Mar  8 16:48 shared
[2026-03-08 18:40:35] -rw-r--r-- 1 boinc boinc         0 Mar  8 16:48 boinc_setup_complete
[2026-03-08 18:40:35] -rw-r--r-- 1 boinc boinc      6205 Mar  8 16:48 init_data.xml
[2026-03-08 18:40:35] -rw-r--r-- 1 boinc boinc         0 Mar  8 16:48 boinc_lockfile
[2026-03-08 18:40:35] -rw-r--r-- 1 boinc boinc      2563 Mar  8 16:48 pandaJob.out
[2026-03-08 18:40:35] -rw------- 1 boinc boinc    999212 Mar  8 16:49 agis_schedconf.cvmfs.json
[2026-03-08 18:40:35] -rw------- 1 boinc boinc   1521291 Mar  8 16:49 agis_ddmendpoints.agis.ALL.json
[2026-03-08 18:40:35] -rw------- 1 boinc boinc       419 Mar  8 16:49 workernode_map.json
[2026-03-08 18:40:35] drwx------ 5 boinc boinc      4096 Mar  8 16:49 pilot3
[2026-03-08 18:40:35] -rw------- 1 boinc boinc 180369342 Mar  8 18:39 HITS.48955006._021862.pool.root.1
[2026-03-08 18:40:35] -rw------- 1 boinc boinc        95 Mar  8 18:39 pilot_heartbeat.json
[2026-03-08 18:40:35] -rw-r--r-- 1 boinc boinc       530 Mar  8 18:39 boinc_task_state.xml
[2026-03-08 18:40:35] -rw------- 1 boinc boinc      1028 Mar  8 18:39 memory_monitor_summary.json
[2026-03-08 18:40:35] -rw------- 1 boinc boinc    254273 Mar  8 18:39 log.48955006._021862.job.log.tgz.1
[2026-03-08 18:40:35] -rw------- 1 boinc boinc      6300 Mar  8 18:39 heartbeat.json
[2026-03-08 18:40:35] -rw-r--r-- 1 boinc boinc      8192 Mar  8 18:40 boinc_mmap_file
[2026-03-08 18:40:35] -rw-r--r-- 1 boinc boinc        27 Mar  8 18:40 wrapper_checkpoint.txt
[2026-03-08 18:40:35] -rw------- 1 boinc boinc      4819 Mar  8 18:40 pilotlog.txt
[2026-03-08 18:40:35] -rw------- 1 boinc boinc    957505 Mar  8 18:40 log.48955006._021862.job.log.1
[2026-03-08 18:40:35] -rw------- 1 boinc boinc       357 Mar  8 18:40 output.list
[2026-03-08 18:40:35] -rw-r--r-- 1 boinc boinc       620 Mar  8 18:40 runtime_log
[2026-03-08 18:40:35] -rw------- 1 boinc boinc   1228800 Mar  8 18:40 result.tar.gz
[2026-03-08 18:40:35] -rw-r--r-- 1 boinc boinc      8896 Mar  8 18:40 runtime_log.err
[2026-03-08 18:40:35] -rw------- 1 boinc boinc       657 Mar  8 18:40 mzWNDmdMIJ9n9Rq4apOajLDm4fhM0noT9bVooX4SDm5NVLDmKbcopn.diag
[2026-03-08 18:40:35] -rw-r--r-- 1 boinc boinc     11803 Mar  8 18:40 stderr.txt
[2026-03-08 18:40:35] HITS file was successfully produced:
[2026-03-08 18:40:35] -rw------- 1 boinc boinc 180369342 Mar  8 18:39 shared/HITS.pool.root.1
[2026-03-08 18:40:35]  *** Contents of shared directory: ***
[2026-03-08 18:40:35] total 610104
[2026-03-08 18:40:35] -rw-r--r-- 2 boinc boinc 442524941 Mar  8 16:48 ATLAS.root_0
[2026-03-08 18:40:35] -rw-r--r-- 2 boinc boinc    597956 Mar  8 16:48 input.tar.gz
[2026-03-08 18:40:35] -rw-r--r-- 2 boinc boinc     15845 Mar  8 16:48 start_atlas.sh
[2026-03-08 18:40:35] -rw------- 1 boinc boinc 180369342 Mar  8 18:39 HITS.pool.root.1
[2026-03-08 18:40:35] -rw------- 1 boinc boinc   1228800 Mar  8 18:40 result.tar.gz
18:40:37 (717890): run_atlas exited; CPU time 12850.755776
18:40:37 (717890): called boinc_finish(0)

</stderr_txt>
]]>

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