Stderr output

<core_client_version>7.4.25</core_client_version>
<![CDATA[
<stderr_txt>
05:43:49 (4639): wrapper (7.7.26015): starting
05:43:49 (4639): wrapper: running run_atlas (--nthreads 4)
[2026-03-08 05:43:49] Arguments: --nthreads 4
[2026-03-08 05:43:49] Threads: 4
[2026-03-08 05:43:49] Checking for CVMFS
[2026-03-08 05:44:07] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-08 05:44:17] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-08 05:44:17] Running cvmfs_config stat atlas.cern.ch
[2026-03-08 05:44:18] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-08 05:44:18] 2.11.5.0 4861 0 25072 157029 3 1 2964364 4194305 0 130560 0 0 0.000 1336 133 http://s1ral-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.100.152:3128 1
[2026-03-08 05:44:18] CVMFS is ok
[2026-03-08 05:44:18] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-08 05:44:18] Checking for apptainer binary...
[2026-03-08 05:44:18] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-08 05:44:18] Running /usr/bin/apptainer --version
[2026-03-08 05:44:18] apptainer version 1.0.3
[2026-03-08 05:44:18] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-08 05:44:20] TeeC35
[2026-03-08 05:44:20] apptainer works
[2026-03-08 05:44:20] Set ATHENA_PROC_NUMBER=4
[2026-03-08 05:44:20] Set ATHENA_CORE_NUMBER=4
[2026-03-08 05:44:20] Starting ATLAS job with PandaID=7045744999
[2026-03-08 05:44:20] Running command: /usr/bin/apptainer exec -B /cvmfs,/home/m/BOINC/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-08 09:08:46]  *** The last 200 lines of the pilot log: ***
[2026-03-08 09:08:46] 2026-03-08 09:07:41,404 | INFO     | reading metadata from: /home/m/BOINC/slots/3/PanDA_Pilot-7045744999/jobReport.json
[2026-03-08 09:08:46] 2026-03-08 09:07:41,407 | INFO     | added worker_node to metadata from /home/m/BOINC/slots/3/workernode_map.json
[2026-03-08 09:08:46] 2026-03-08 09:07:41,407 | INFO     | this job has now completed (state=finished)
[2026-03-08 09:08:46] 2026-03-08 09:07:41,407 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-03-08 09:08:46] 2026-03-08 09:07:41,407 | INFO     | log transfer has been attempted: DONE
[2026-03-08 09:08:46] 2026-03-08 09:07:41,407 | INFO     | job 7045744999 has finished - writing final server update
[2026-03-08 09:08:46] 2026-03-08 09:07:41,407 | INFO     | total number of processed events: 400 (read)
[2026-03-08 09:08:46] 2026-03-08 09:07:41,427 | INFO     | using path: /home/m/BOINC/slots/3/PanDA_Pilot-7045744999/memory_monitor_summary.json (trf name=prmon)
[2026-03-08 09:08:46] 2026-03-08 09:07:41,428 | INFO     | extracted standard info from prmon json
[2026-03-08 09:08:46] 2026-03-08 09:07:41,428 | INFO     | extracted standard memory fields from prmon json
[2026-03-08 09:08:46] 2026-03-08 09:07:41,428 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-03-08 09:08:46] 2026-03-08 09:07:41,428 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-03-08 09:08:46] 2026-03-08 09:07:41,428 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-03-08 09:08:46] 2026-03-08 09:07:41,433 | INFO     | fitting pss+swap vs Time
[2026-03-08 09:08:46] 2026-03-08 09:07:41,433 | INFO     | sum of square deviations: 2443580700.0
[2026-03-08 09:08:46] 2026-03-08 09:07:41,435 | INFO     | sum of deviations: -19138320681.999996
[2026-03-08 09:08:46] 2026-03-08 09:07:41,435 | INFO     | mean x: 1772954781.0
[2026-03-08 09:08:46] 2026-03-08 09:07:41,435 | INFO     | mean y: 2398259.286432161
[2026-03-08 09:08:46] 2026-03-08 09:07:41,435 | INFO     | intersect: 13888322777.131525
[2026-03-08 09:08:46] 2026-03-08 09:07:41,436 | INFO     | chi2: 1.7479942833262594
[2026-03-08 09:08:46] 2026-03-08 09:07:41,436 | INFO     | sum of square deviations: 2263977332.5
[2026-03-08 09:08:46] 2026-03-08 09:07:41,438 | INFO     | sum of deviations: -18649796661.5
[2026-03-08 09:08:46] 2026-03-08 09:07:41,438 | INFO     | mean x: 1772954628.5
[2026-03-08 09:08:46] 2026-03-08 09:07:41,438 | INFO     | mean y: 2398674.180412371
[2026-03-08 09:08:46] 2026-03-08 09:07:41,438 | INFO     | intersect: 14607334349.520384
[2026-03-08 09:08:46] 2026-03-08 09:07:41,439 | INFO     | chi2: 1.7450116694203386
[2026-03-08 09:08:46] 2026-03-08 09:07:41,439 | INFO     | current chi2=1.7450116694203386 (change=0.17063064418295396 %)
[2026-03-08 09:08:46] 2026-03-08 09:07:41,439 | INFO     | right removable region: 193
[2026-03-08 09:08:46] 2026-03-08 09:07:41,439 | INFO     | sum of square deviations: 2263977332.5
[2026-03-08 09:08:46] 2026-03-08 09:07:41,441 | INFO     | sum of deviations: -42724990449.50001
[2026-03-08 09:08:46] 2026-03-08 09:07:41,441 | INFO     | mean x: 1772954933.5
[2026-03-08 09:08:46] 2026-03-08 09:07:41,441 | INFO     | mean y: 2417969.097938144
[2026-03-08 09:08:46] 2026-03-08 09:07:41,441 | INFO     | intersect: 33461004993.70165
[2026-03-08 09:08:46] 2026-03-08 09:07:41,442 | INFO     | chi2: 0.38788912432804507
[2026-03-08 09:08:46] 2026-03-08 09:07:41,442 | INFO     | current chi2=0.38788912432804507 (change=77.80947409107479 %)
[2026-03-08 09:08:46] 2026-03-08 09:07:41,442 | INFO     | sum of square deviations: 2093397390.0
[2026-03-08 09:08:46] 2026-03-08 09:07:41,444 | INFO     | sum of deviations: -33088174551.0
[2026-03-08 09:08:46] 2026-03-08 09:07:41,444 | INFO     | mean x: 1772955086.0
[2026-03-08 09:08:46] 2026-03-08 09:07:41,444 | INFO     | mean y: 2409346.814814815
[2026-03-08 09:08:46] 2026-03-08 09:07:41,444 | INFO     | intersect: 28025682728.583588
[2026-03-08 09:08:46] 2026-03-08 09:07:41,445 | INFO     | chi2: 0.34986133138334097
[2026-03-08 09:08:46] 2026-03-08 09:07:41,445 | INFO     | current chi2=0.34986133138334097 (change=9.803779110997525 %)
[2026-03-08 09:08:46] 2026-03-08 09:07:41,445 | INFO     | left removable region: 20
[2026-03-08 09:08:46] 2026-03-08 09:07:41,445 | INFO     | sum of square deviations: 1605470102.0
[2026-03-08 09:08:46] 2026-03-08 09:07:41,447 | INFO     | sum of deviations: -11473781641.0
[2026-03-08 09:08:46] 2026-03-08 09:07:41,447 | INFO     | mean x: 1772955208.0
[2026-03-08 09:08:46] 2026-03-08 09:07:41,447 | INFO     | mean y: 2388808.9132947978
[2026-03-08 09:08:46] 2026-03-08 09:07:41,447 | INFO     | intersect: 12673132966.979053
[2026-03-08 09:08:46] 2026-03-08 09:07:41,448 | INFO     | chi2: 0.1919249851294645
[2026-03-08 09:08:46] 2026-03-08 09:07:41,448 | INFO     | current memory leak: -7.15 B/s (using 173 data points, chi2=0.19)
[2026-03-08 09:08:46] 2026-03-08 09:07:41,448 | INFO     | could have reported an average CPU frequency of 2907 MHz (10 samples)
[2026-03-08 09:08:46] 2026-03-08 09:07:41,448 | INFO     | ..............................
[2026-03-08 09:08:46] 2026-03-08 09:07:41,448 | INFO     | . Timing measurements:
[2026-03-08 09:08:46] 2026-03-08 09:07:41,449 | INFO     | . get job = 0 s
[2026-03-08 09:08:46] 2026-03-08 09:07:41,449 | INFO     | . initial setup = 8 s
[2026-03-08 09:08:46] 2026-03-08 09:07:41,449 | INFO     | . payload setup = 5 s
[2026-03-08 09:08:46] 2026-03-08 09:07:41,449 | INFO     | . stage-in = 0 s
[2026-03-08 09:08:46] 2026-03-08 09:07:41,449 | INFO     | . payload execution = 12117 s
[2026-03-08 09:08:46] 2026-03-08 09:07:41,449 | INFO     | . stage-out = 2 s
[2026-03-08 09:08:46] 2026-03-08 09:07:41,449 | INFO     | . log creation = 0 s
[2026-03-08 09:08:46] 2026-03-08 09:07:41,449 | INFO     | ..............................
[2026-03-08 09:08:46] 2026-03-08 09:07:41,547 | INFO     | 
[2026-03-08 09:08:46] 2026-03-08 09:07:41,548 | INFO     | job summary report
[2026-03-08 09:08:46] 2026-03-08 09:07:41,548 | INFO     | --------------------------------------------------
[2026-03-08 09:08:46] 2026-03-08 09:07:41,548 | INFO     | PanDA job id: 7045744999
[2026-03-08 09:08:46] 2026-03-08 09:07:41,548 | INFO     | task id: 48998022
[2026-03-08 09:08:46] 2026-03-08 09:07:41,548 | INFO     | errors: (none)
[2026-03-08 09:08:46] 2026-03-08 09:07:41,549 | INFO     | status: LOG_TRANSFER = DONE 
[2026-03-08 09:08:46] 2026-03-08 09:07:41,549 | INFO     | pilot state: finished 
[2026-03-08 09:08:46] 2026-03-08 09:07:41,549 | INFO     | transexitcode: 0
[2026-03-08 09:08:46] 2026-03-08 09:07:41,549 | INFO     | exeerrorcode: 0
[2026-03-08 09:08:46] 2026-03-08 09:07:41,549 | INFO     | exeerrordiag: 
[2026-03-08 09:08:46] 2026-03-08 09:07:41,549 | INFO     | exitcode: 0
[2026-03-08 09:08:46] 2026-03-08 09:07:41,549 | INFO     | exitmsg: OK
[2026-03-08 09:08:46] 2026-03-08 09:07:41,549 | INFO     | cpuconsumptiontime: 47022 s
[2026-03-08 09:08:46] 2026-03-08 09:07:41,549 | INFO     | nevents: 400
[2026-03-08 09:08:46] 2026-03-08 09:07:41,549 | INFO     | neventsw: 0
[2026-03-08 09:08:46] 2026-03-08 09:07:41,550 | INFO     | pid: 13328
[2026-03-08 09:08:46] 2026-03-08 09:07:41,550 | INFO     | pgrp: 13328
[2026-03-08 09:08:46] 2026-03-08 09:07:41,550 | INFO     | corecount: 4
[2026-03-08 09:08:46] 2026-03-08 09:07:41,550 | INFO     | event service: False
[2026-03-08 09:08:46] 2026-03-08 09:07:41,550 | INFO     | sizes: {0: 2295645, 1: 2295851, 11: 2295879, 12126: 2325657, 12129: 2334709, 12130: 2334847}
[2026-03-08 09:08:46] 2026-03-08 09:07:41,550 | INFO     | --------------------------------------------------
[2026-03-08 09:08:46] 2026-03-08 09:07:41,550 | INFO     | 
[2026-03-08 09:08:46] 2026-03-08 09:07:41,550 | INFO     | executing command: ls -lF /home/m/BOINC/slots/3
[2026-03-08 09:08:46] 2026-03-08 09:07:41,559 | INFO     | queue jobs had 0 job(s) [purged]
[2026-03-08 09:08:46] 2026-03-08 09:07:41,560 | INFO     | queue payloads had 0 job(s) [purged]
[2026-03-08 09:08:46] 2026-03-08 09:07:41,560 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-08 09:08:46] 2026-03-08 09:07:41,560 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-08 09:08:46] 2026-03-08 09:07:41,560 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-08 09:08:46] 2026-03-08 09:07:41,560 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-08 09:08:46] 2026-03-08 09:07:41,560 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-08 09:08:46] 2026-03-08 09:07:41,560 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-08 09:08:46] 2026-03-08 09:07:41,560 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-08 09:08:46] 2026-03-08 09:07:41,560 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-08 09:08:46] 2026-03-08 09:07:41,561 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-08 09:08:46] 2026-03-08 09:07:41,561 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-08 09:08:46] 2026-03-08 09:07:41,561 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-08 09:08:46] 2026-03-08 09:07:41,561 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-08 09:08:46] 2026-03-08 09:07:41,561 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-08 09:08:46] 2026-03-08 09:07:41,561 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-08 09:08:46] 2026-03-08 09:07:41,561 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-08 09:08:46] 2026-03-08 09:07:41,561 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-08 09:08:46] 2026-03-08 09:07:41,561 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-08 09:08:46] 2026-03-08 09:07:41,561 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-08 09:08:46] 2026-03-08 09:07:41,562 | INFO     | job 7045744999 has completed (purged errors)
[2026-03-08 09:08:46] 2026-03-08 09:07:41,562 | INFO     | overall cleanup function is called
[2026-03-08 09:08:46] 2026-03-08 09:07:41,594 | WARNING  | process 13328 can no longer be monitored (due to stat problems) - aborting
[2026-03-08 09:08:46] 2026-03-08 09:07:41,638 | INFO     | using path: /home/m/BOINC/slots/3/memory_monitor_summary.json (trf name=prmon)
[2026-03-08 09:08:46] 2026-03-08 09:07:41,700 | INFO     | number of running child processes to parent process 13328: 1
[2026-03-08 09:08:46] 2026-03-08 09:07:41,700 | INFO     | maximum number of monitored processes: 6
[2026-03-08 09:08:46] 2026-03-08 09:07:41,700 | INFO     | aborting job monitoring since job object (job id=7045744999) has expired
[2026-03-08 09:08:46] 2026-03-08 09:07:42,569 | INFO     | --- collectZombieJob: --- 10, [13328]
[2026-03-08 09:08:46] 2026-03-08 09:07:42,569 | INFO     | zombie collector waiting for pid 13328
[2026-03-08 09:08:46] 2026-03-08 09:07:42,570 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-08 09:08:46] 2026-03-08 09:07:42,570 | INFO     | collected zombie processes
[2026-03-08 09:08:46] 2026-03-08 09:07:42,570 | INFO     | will attempt to kill all subprocesses of pid=13328
[2026-03-08 09:08:46] 2026-03-08 09:07:42,645 | INFO     | process IDs to be killed: [13328] (in reverse order)
[2026-03-08 09:08:46] 2026-03-08 09:07:42,672 | WARNING  | found no corresponding commands to process id(s)
[2026-03-08 09:08:46] 2026-03-08 09:07:42,673 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-08 09:08:46] 2026-03-08 09:07:42,675 | INFO     | did not find any defunct processes belonging to 13328
[2026-03-08 09:08:46] 2026-03-08 09:07:42,677 | INFO     | did not find any defunct processes belonging to 13328
[2026-03-08 09:08:46] 2026-03-08 09:07:42,677 | INFO     | ready for new job
[2026-03-08 09:08:46] 2026-03-08 09:07:42,677 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-08 09:08:46] 2026-03-08 09:07:42,679 | INFO     | **************************************
[2026-03-08 09:08:46] 2026-03-08 09:07:42,679 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-03-08 09:08:46] 2026-03-08 09:07:42,679 | INFO     | **************************************
[2026-03-08 09:08:46] 2026-03-08 09:07:42,679 | INFO     | 
[2026-03-08 09:08:46] 2026-03-08 09:07:42,698 | INFO     | architecture information:
[2026-03-08 09:08:46] 2026-03-08 09:07:42,699 | INFO     | executing command: cat /etc/os-release
[2026-03-08 09:08:46] 2026-03-08 09:07:42,705 | INFO     | cat /etc/os-release:
[2026-03-08 09:08:46] NAME="CentOS Linux"
[2026-03-08 09:08:46] VERSION="7 (Core)"
[2026-03-08 09:08:46] ID="centos"
[2026-03-08 09:08:46] ID_LIKE="rhel fedora"
[2026-03-08 09:08:46] VERSION_ID="7"
[2026-03-08 09:08:46] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-08 09:08:46] ANSI_COLOR="0;31"
[2026-03-08 09:08:46] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-08 09:08:46] HOME_URL="https://www.centos.org/"
[2026-03-08 09:08:46] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-08 09:08:46] 
[2026-03-08 09:08:46] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-08 09:08:46] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-08 09:08:46] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-08 09:08:46] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-08 09:08:46] 
[2026-03-08 09:08:46] 2026-03-08 09:07:42,706 | INFO     | **************************************
[2026-03-08 09:08:46] 2026-03-08 09:07:43,209 | INFO     | executing command: df -mP /home/m/BOINC/slots/3
[2026-03-08 09:08:46] 2026-03-08 09:07:43,220 | INFO     | sufficient remaining disk space (418001190912 B)
[2026-03-08 09:08:46] 2026-03-08 09:07:43,221 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-08 09:08:46] 2026-03-08 09:07:43,221 | INFO     | current server update state: UPDATING_FINAL
[2026-03-08 09:08:46] 2026-03-08 09:07:43,221 | INFO     | update_server=False
[2026-03-08 09:08:46] 2026-03-08 09:07:43,221 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-08 09:08:46] 2026-03-08 09:07:43,221 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-08 09:08:46] 2026-03-08 09:07:43,221 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-08 09:08:46] 2026-03-08 09:07:43,221 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-08 09:08:46] 2026-03-08 09:07:43,222 | INFO     | aborting loop
[2026-03-08 09:08:46] 2026-03-08 09:07:43,226 | INFO     | all payload control threads have been joined
[2026-03-08 09:08:46] 2026-03-08 09:07:43,491 | INFO     | all data control threads have been joined
[2026-03-08 09:08:46] 2026-03-08 09:07:44,227 | INFO     | [job] retrieve thread has finished
[2026-03-08 09:08:46] 2026-03-08 09:07:44,228 | INFO     | [job] job monitor thread has finished
[2026-03-08 09:08:46] 2026-03-08 09:07:44,229 | INFO     | [job] queue monitor thread has finished
[2026-03-08 09:08:46] 2026-03-08 09:07:44,231 | INFO     | [payload] control thread has finished
[2026-03-08 09:08:46] 2026-03-08 09:07:44,259 | INFO     | [payload] validate_pre thread has finished
[2026-03-08 09:08:46] 2026-03-08 09:07:44,295 | INFO     | [payload] validate_post thread has finished
[2026-03-08 09:08:46] 2026-03-08 09:07:44,310 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-08 09:08:46] 2026-03-08 09:07:44,390 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-08 09:08:46] 2026-03-08 09:07:44,408 | INFO     | all job control threads have been joined
[2026-03-08 09:08:46] 2026-03-08 09:07:44,497 | INFO     | [data] control thread has finished
[2026-03-08 09:08:46] 2026-03-08 09:07:44,511 | INFO     | [job] create_data_payload thread has finished
[2026-03-08 09:08:46] 2026-03-08 09:07:44,692 | INFO     | [data] copytool_in thread has finished
[2026-03-08 09:08:46] 2026-03-08 09:07:45,201 | INFO     | [payload] failed_post thread has finished
[2026-03-08 09:08:46] 2026-03-08 09:07:45,401 | INFO     | [payload] execute_payloads thread has finished
[2026-03-08 09:08:46] 2026-03-08 09:07:45,410 | INFO     | [job] control thread has finished
[2026-03-08 09:08:46] 2026-03-08 09:07:45,528 | INFO     | [job] validate thread has finished
[2026-03-08 09:08:46] 2026-03-08 09:07:46,317 | INFO     | [data] copytool_out thread has finished
[2026-03-08 09:08:46] 2026-03-08 09:07:47,229 | INFO     | [data] queue_monitor thread has finished
[2026-03-08 09:08:46] 2026-03-08 09:08:13,942 | INFO     | PID=8950 has CPU usage=4.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2026-03-08 09:08:46] 2026-03-08 09:08:13,942 | INFO     | found 0 job(s) in 20 queues
[2026-03-08 09:08:46] 2026-03-08 09:08:13,942 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-08 09:08:46] 2026-03-08 09:08:13,942 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-08 09:08:46] 2026-03-08 09:08:40,390 | INFO     | [monitor] cgroup control has ended
[2026-03-08 09:08:46] 2026-03-08 09:08:41,082 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139645357504320)>', '<ExcThread(monitor, started 139644905690880)>']
[2026-03-08 09:08:46] 2026-03-08 09:08:41,084 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-08 09:08:46] 2026-03-08 09:08:41,085 | INFO     | [monitor] control thread has ended
[2026-03-08 09:08:46] 2026-03-08 09:08:46,108 | INFO     | all workflow threads have been joined
[2026-03-08 09:08:46] 2026-03-08 09:08:46,109 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-08 09:08:46] 2026-03-08 09:08:46,109 | INFO     | traces error code: 0
[2026-03-08 09:08:46] 2026-03-08 09:08:46,110 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-08 09:08:46] 2026-03-08 09:08:46,245 [wrapper] ==== pilot stdout END ====
[2026-03-08 09:08:46] 2026-03-08 09:08:46,247 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-08 09:08:46] 2026-03-08 09:08:46,249 [wrapper] pilotpid: 8950
[2026-03-08 09:08:46] 2026-03-08 09:08:46,251 [wrapper] Pilot exit status: 0
[2026-03-08 09:08:46] 2026-03-08 09:08:46,263 [wrapper] pandaids: 7045744999
[2026-03-08 09:08:46] 2026-03-08 09:08:46,279 [wrapper] cleanup supervisor_pilot 19616 8951
[2026-03-08 09:08:46] 2026-03-08 09:08:46,281 [wrapper] Test setup, not cleaning
[2026-03-08 09:08:46] 2026-03-08 09:08:46,283 [wrapper] apfmon messages muted
[2026-03-08 09:08:46] 2026-03-08 09:08:46,285 [wrapper] ==== wrapper stdout END ====
[2026-03-08 09:08:46] 2026-03-08 09:08:46,287 [wrapper] ==== wrapper stderr END ====
[2026-03-08 09:08:46]  *** Error codes and diagnostics ***
[2026-03-08 09:08:46]     "exeErrorCode": 0,
[2026-03-08 09:08:46]     "exeErrorDiag": "",
[2026-03-08 09:08:46]     "pilotErrorCode": 0,
[2026-03-08 09:08:46]     "pilotErrorDiag": "",
[2026-03-08 09:08:46]  *** Listing of results directory ***
[2026-03-08 09:08:46] total 555256
[2026-03-08 09:08:46] -rw-r--r-- 1 m m      5111 Mar  8 01:40 queuedata.json
[2026-03-08 09:08:46] -rw-r--r-- 1 m m    584627 Mar  8 01:40 pilot3.tar.gz
[2026-03-08 09:08:46] -rwx------ 1 m m     36322 Mar  8 01:40 runpilot2-wrapper.sh
[2026-03-08 09:08:46] -rw-rw-r-- 1 m m       100 Mar  8 05:43 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-08 09:08:46] -rwxr-xr-x 1 m m      7986 Mar  8 05:43 run_atlas
[2026-03-08 09:08:46] -rw-rw-r-- 1 m m       105 Mar  8 05:43 job.xml
[2026-03-08 09:08:46] -rw-r--r-- 2 m m     15845 Mar  8 05:43 start_atlas.sh
[2026-03-08 09:08:46] drwxrwx--x 2 m m      4096 Mar  8 05:43 shared
[2026-03-08 09:08:46] -rw-r--r-- 2 m m    597952 Mar  8 05:43 input.tar.gz
[2026-03-08 09:08:46] -rw-rw-r-- 1 m m      6005 Mar  8 05:43 init_data.xml
[2026-03-08 09:08:46] -rw-r--r-- 2 m m 322280809 Mar  8 05:43 EVNT.48998020._000004.pool.root.1
[2026-03-08 09:08:46] -rw-rw-r-- 1 m m         0 Mar  8 05:43 boinc_lockfile
[2026-03-08 09:08:46] -rw-rw-r-- 1 m m      2606 Mar  8 05:44 pandaJob.out
[2026-03-08 09:08:46] -rw------- 1 m m    999169 Mar  8 05:45 agis_schedconf.cvmfs.json
[2026-03-08 09:08:46] -rw------- 1 m m       424 Mar  8 05:45 workernode_map.json
[2026-03-08 09:08:46] drwx------ 5 m m      4096 Mar  8 05:45 pilot3
[2026-03-08 09:08:46] -rw------- 1 m m 238240716 Mar  8 09:07 HITS.48998022._000080.pool.root.1
[2026-03-08 09:08:46] -rw-rw-r-- 1 m m       530 Mar  8 09:07 boinc_task_state.xml
[2026-03-08 09:08:46] -rw------- 1 m m        95 Mar  8 09:07 pilot_heartbeat.json
[2026-03-08 09:08:46] -rw------- 1 m m      1029 Mar  8 09:07 memory_monitor_summary.json
[2026-03-08 09:08:46] -rw------- 1 m m   1521291 Mar  8 09:07 agis_ddmendpoints.agis.ALL.json
[2026-03-08 09:08:46] -rw------- 1 m m    356811 Mar  8 09:07 log.48998022._000080.job.log.tgz.1
[2026-03-08 09:08:46] -rw------- 1 m m      6321 Mar  8 09:07 heartbeat.json
[2026-03-08 09:08:46] -rw-rw-r-- 1 m m        28 Mar  8 09:08 wrapper_checkpoint.txt
[2026-03-08 09:08:46] -rw-rw-r-- 1 m m      8192 Mar  8 09:08 boinc_mmap_file
[2026-03-08 09:08:46] -rw------- 1 m m      4741 Mar  8 09:08 pilotlog.txt
[2026-03-08 09:08:46] -rw------- 1 m m   1703587 Mar  8 09:08 log.48998022._000080.job.log.1
[2026-03-08 09:08:46] -rw------- 1 m m       357 Mar  8 09:08 output.list
[2026-03-08 09:08:46] -rw-rw-r-- 1 m m       620 Mar  8 09:08 runtime_log
[2026-03-08 09:08:46] -rw------- 1 m m   2078720 Mar  8 09:08 result.tar.gz
[2026-03-08 09:08:46] -rw-rw-r-- 1 m m      8729 Mar  8 09:08 runtime_log.err
[2026-03-08 09:08:46] -rw------- 1 m m       645 Mar  8 09:08 ixwLDmiJIJ9nsSi4ap6QjLDmwznN0nGgGQJmIVkRDmJjXLDmPEz6Zm.diag
[2026-03-08 09:08:46] -rw-rw-r-- 1 m m     20928 Mar  8 09:08 stderr.txt
[2026-03-08 09:08:46] HITS file was successfully produced:
[2026-03-08 09:08:46] -rw------- 1 m m 238240716 Mar  8 09:07 shared/HITS.pool.root.1
[2026-03-08 09:08:46]  *** Contents of shared directory: ***
[2026-03-08 09:08:46] total 550028
[2026-03-08 09:08:46] -rw-r--r-- 2 m m     15845 Mar  8 05:43 start_atlas.sh
[2026-03-08 09:08:46] -rw-r--r-- 2 m m    597952 Mar  8 05:43 input.tar.gz
[2026-03-08 09:08:46] -rw-r--r-- 2 m m 322280809 Mar  8 05:43 ATLAS.root_0
[2026-03-08 09:08:46] -rw------- 1 m m 238240716 Mar  8 09:07 HITS.pool.root.1
[2026-03-08 09:08:46] -rw------- 1 m m   2078720 Mar  8 09:08 result.tar.gz
09:08:48 (4639): run_atlas exited; CPU time 47149.534903
09:08:48 (4639): called boinc_finish(0)

</stderr_txt>
]]>

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