Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
12:01:01 (722599): wrapper (7.7.26015): starting
12:01:01 (722599): wrapper: running run_atlas (--nthreads 4)
[2026-03-08 12:01:01] Arguments: --nthreads 4
[2026-03-08 12:01:01] Threads: 4
[2026-03-08 12:01:01] Checking for CVMFS
[2026-03-08 12:01:01] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-08 12:01:01] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-08 12:01:01] Running cvmfs_config stat atlas.cern.ch
[2026-03-08 12:01:01] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-08 12:01:01] 2.9.2.0 3116 3315 98180 157036 0 50 34456067 36864001 0 130560 0 2046182 99.989 130031 8662 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-03-08 12:01:01] CVMFS is ok
[2026-03-08 12:01:01] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-08 12:01:01] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-08 12:01:01] Further information can be found at the LHC@home message board.
[2026-03-08 12:01:01] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-08 12:01:01] Checking for apptainer binary...
[2026-03-08 12:01:01] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-08 12:01:01] Running /usr/bin/apptainer --version
[2026-03-08 12:01:01] apptainer version 1.4.1-1.1
[2026-03-08 12:01:01] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-08 12:01:01] thA373a
[2026-03-08 12:01:01] apptainer works
[2026-03-08 12:01:01] Set ATHENA_PROC_NUMBER=4
[2026-03-08 12:01:01] Set ATHENA_CORE_NUMBER=4
[2026-03-08 12:01:01] Starting ATLAS job with PandaID=7045645023
[2026-03-08 12:01:01] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-08 12:09:22]  *** The last 200 lines of the pilot log: ***
[2026-03-08 12:09:22] 2026-03-08 11:09:09,444 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-08 12:09:22] 2026-03-08 11:09:09,444 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-08 12:09:22] 2026-03-08 11:09:09,444 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-08 12:09:22] 2026-03-08 11:09:09,444 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-08 12:09:22] 2026-03-08 11:09:09,444 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-08 12:09:22] 2026-03-08 11:09:09,444 | INFO     | job 7045645023 has completed (purged errors)
[2026-03-08 12:09:22] 2026-03-08 11:09:09,444 | INFO     | overall cleanup function is called
[2026-03-08 12:09:22] 2026-03-08 11:09:10,451 | INFO     | --- collectZombieJob: --- 10, [731231]
[2026-03-08 12:09:22] 2026-03-08 11:09:10,451 | INFO     | zombie collector waiting for pid 731231
[2026-03-08 12:09:22] 2026-03-08 11:09:10,451 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-08 12:09:22] 2026-03-08 11:09:10,452 | INFO     | collected zombie processes
[2026-03-08 12:09:22] 2026-03-08 11:09:10,452 | INFO     | will attempt to kill all subprocesses of pid=731231
[2026-03-08 12:09:22] 2026-03-08 11:09:10,496 | INFO     | process IDs to be killed: [731231] (in reverse order)
[2026-03-08 12:09:22] 2026-03-08 11:09:10,533 | WARNING  | found no corresponding commands to process id(s)
[2026-03-08 12:09:22] 2026-03-08 11:09:10,533 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-08 12:09:22] 2026-03-08 11:09:10,535 | INFO     | did not find any defunct processes belonging to 731231
[2026-03-08 12:09:22] 2026-03-08 11:09:10,536 | INFO     | did not find any defunct processes belonging to 731231
[2026-03-08 12:09:22] 2026-03-08 11:09:10,536 | INFO     | ready for new job
[2026-03-08 12:09:22] 2026-03-08 11:09:10,536 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-08 12:09:22] 2026-03-08 11:09:10,537 | INFO     | **************************************
[2026-03-08 12:09:22] 2026-03-08 11:09:10,537 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-03-08 12:09:22] 2026-03-08 11:09:10,537 | INFO     | **************************************
[2026-03-08 12:09:22] 2026-03-08 11:09:10,537 | INFO     | 
[2026-03-08 12:09:22] 2026-03-08 11:09:10,538 | INFO     | architecture information:
[2026-03-08 12:09:22] 2026-03-08 11:09:10,538 | INFO     | executing command: cat /etc/os-release
[2026-03-08 12:09:22] 2026-03-08 11:09:10,553 | INFO     | cat /etc/os-release:
[2026-03-08 12:09:22] NAME="CentOS Linux"
[2026-03-08 12:09:22] VERSION="7 (Core)"
[2026-03-08 12:09:22] ID="centos"
[2026-03-08 12:09:22] ID_LIKE="rhel fedora"
[2026-03-08 12:09:22] VERSION_ID="7"
[2026-03-08 12:09:22] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-08 12:09:22] ANSI_COLOR="0;31"
[2026-03-08 12:09:22] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-08 12:09:22] HOME_URL="https://www.centos.org/"
[2026-03-08 12:09:22] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-08 12:09:22] 
[2026-03-08 12:09:22] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-08 12:09:22] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-08 12:09:22] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-08 12:09:22] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-08 12:09:22] 
[2026-03-08 12:09:22] 2026-03-08 11:09:10,554 | INFO     | **************************************
[2026-03-08 12:09:22] 2026-03-08 11:09:11,057 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-03-08 12:09:22] 2026-03-08 11:09:11,076 | INFO     | sufficient remaining disk space (323618865152 B)
[2026-03-08 12:09:22] 2026-03-08 11:09:11,076 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-08 12:09:22] 2026-03-08 11:09:11,076 | INFO     | current server update state: UPDATING_FINAL
[2026-03-08 12:09:22] 2026-03-08 11:09:11,076 | INFO     | update_server=False
[2026-03-08 12:09:22] 2026-03-08 11:09:11,076 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-08 12:09:22] 2026-03-08 11:09:11,076 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2026-03-08 12:09:22] 2026-03-08 11:09:11,077 | INFO     | found 0 job(s) in 20 queues
[2026-03-08 12:09:22] 2026-03-08 11:09:11,077 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-08 12:09:22] 2026-03-08 11:09:11,077 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-08 12:09:22] 2026-03-08 11:09:11,077 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-08 12:09:22] 2026-03-08 11:09:11,077 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-08 12:09:22] 2026-03-08 11:09:11,527 | INFO     | all data control threads have been joined
[2026-03-08 12:09:22] 2026-03-08 11:09:11,562 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-08 12:09:22] 2026-03-08 11:09:11,563 | INFO     | aborting loop
[2026-03-08 12:09:22] 2026-03-08 11:09:11,799 | INFO     | all payload control threads have been joined
[2026-03-08 12:09:22] 2026-03-08 11:09:12,082 | INFO     | [job] retrieve thread has finished
[2026-03-08 12:09:22] 2026-03-08 11:09:12,082 | INFO     | [job] queue monitor thread has finished
[2026-03-08 12:09:22] 2026-03-08 11:09:12,145 | INFO     | [payload] validate_pre thread has finished
[2026-03-08 12:09:22] 2026-03-08 11:09:12,177 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-08 12:09:22] 2026-03-08 11:09:12,268 | INFO     | [data] copytool_in thread has finished
[2026-03-08 12:09:22] 2026-03-08 11:09:12,461 | INFO     | all job control threads have been joined
[2026-03-08 12:09:22] 2026-03-08 11:09:12,525 | INFO     | [payload] execute_payloads thread has finished
[2026-03-08 12:09:22] 2026-03-08 11:09:12,533 | INFO     | [data] control thread has finished
[2026-03-08 12:09:22] 2026-03-08 11:09:12,568 | INFO     | [job] job monitor thread has finished
[2026-03-08 12:09:22] 2026-03-08 11:09:12,606 | INFO     | [payload] failed_post thread has finished
[2026-03-08 12:09:22] 2026-03-08 11:09:12,746 | INFO     | [payload] validate_post thread has finished
[2026-03-08 12:09:22] 2026-03-08 11:09:12,805 | INFO     | [payload] control thread has finished
[2026-03-08 12:09:22] 2026-03-08 11:09:13,330 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-08 12:09:22] 2026-03-08 11:09:13,456 | INFO     | [job] validate thread has finished
[2026-03-08 12:09:22] 2026-03-08 11:09:13,467 | INFO     | [job] control thread has finished
[2026-03-08 12:09:22] 2026-03-08 11:09:13,558 | INFO     | [job] create_data_payload thread has finished
[2026-03-08 12:09:22] 2026-03-08 11:09:14,183 | INFO     | [data] copytool_out thread has finished
[2026-03-08 12:09:22] 2026-03-08 11:09:14,504 | INFO     | [monitor] cgroup control has ended
[2026-03-08 12:09:22] 2026-03-08 11:09:15,083 | INFO     | [data] queue_monitor thread has finished
[2026-03-08 12:09:22] 2026-03-08 11:09:16,892 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139678891808576)>', '<ExcThread(monitor, started 139678007146240)>']
[2026-03-08 12:09:22] 2026-03-08 11:09:17,108 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-08 12:09:22] 2026-03-08 11:09:17,109 | INFO     | [monitor] control thread has ended
[2026-03-08 12:09:22] 2026-03-08 11:09:21,918 | INFO     | all workflow threads have been joined
[2026-03-08 12:09:22] 2026-03-08 11:09:21,918 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-08 12:09:22] 2026-03-08 11:09:21,918 | INFO     | traces error code: 0
[2026-03-08 12:09:22] 2026-03-08 11:09:21,918 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-08 12:09:22] 2026-03-08 11:09:21,996 [wrapper] ==== pilot stdout END ====
[2026-03-08 12:09:22] 2026-03-08 11:09:22,001 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-08 12:09:22] 2026-03-08 11:09:22,005 [wrapper] pilotpid: 726718
[2026-03-08 12:09:22] 2026-03-08 11:09:22,009 [wrapper] Pilot exit status: 0
[2026-03-08 12:09:22] 2026-03-08 11:09:22,021 [wrapper] pandaids: 7045645023
[2026-03-08 12:09:22] 2026-03-08 11:09:22,042 [wrapper] cleanup supervisor_pilot  726724 726719
[2026-03-08 12:09:22] 2026-03-08 11:09:22,046 [wrapper] Test setup, not cleaning
[2026-03-08 12:09:22] 2026-03-08 11:09:22,050 [wrapper] apfmon messages muted
[2026-03-08 12:09:22] 2026-03-08 11:09:22,054 [wrapper] ==== wrapper stdout END ====
[2026-03-08 12:09:22] 2026-03-08 11:09:22,058 [wrapper] ==== wrapper stderr END ====
[2026-03-08 12:09:22]  *** Error codes and diagnostics ***
[2026-03-08 12:09:22]     "exeErrorCode": 65,
[2026-03-08 12:09:22]     "exeErrorDiag": "EVNTtoHITS got a SIGHUP signal (exit code 129); Logfile error in log.EVNTtoHITS: \"CoreDumpSvc   FATAL Caught fatal signal. Printing details to stdout.\"; Possible memory leak: 'pss' slope: 8151.24 KB/s",
[2026-03-08 12:09:22]     "pilotErrorCode": 1305,
[2026-03-08 12:09:22]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: EVNTtoHITS got a SIGHUP signal (exit code 129); Logfile error in log.EVNTtoHITS: \"CoreDumpSvc   FATAL Caught fatal signal. Printing details to stdout.\"; Possib",
[2026-03-08 12:09:22]  *** Listing of results directory ***
[2026-03-08 12:09:22] total 232804
[2026-03-08 12:09:22] -rw-r--r-- 1 boinc boinc    584627 Mar  8 00:08 pilot3.tar.gz
[2026-03-08 12:09:22] -rwx------ 1 boinc boinc     36322 Mar  8 00:10 runpilot2-wrapper.sh
[2026-03-08 12:09:22] -rw-r--r-- 1 boinc boinc      5111 Mar  8 00:11 queuedata.json
[2026-03-08 12:09:22] -rw-r--r-- 1 boinc boinc       100 Mar  8 12:01 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-08 12:09:22] -rwxr-xr-x 1 boinc boinc      7986 Mar  8 12:01 run_atlas
[2026-03-08 12:09:22] -rw-r--r-- 1 boinc boinc       105 Mar  8 12:01 job.xml
[2026-03-08 12:09:22] -rw-r--r-- 2 boinc boinc 233995930 Mar  8 12:01 EVNT.48967065._000010.pool.root.1
[2026-03-08 12:09:22] -rw-r--r-- 2 boinc boinc    597969 Mar  8 12:01 input.tar.gz
[2026-03-08 12:09:22] -rw-r--r-- 2 boinc boinc     15845 Mar  8 12:01 start_atlas.sh
[2026-03-08 12:09:22] drwxrwx--x 2 boinc boinc      4096 Mar  8 12:01 shared
[2026-03-08 12:09:22] -rw-r--r-- 1 boinc boinc         0 Mar  8 12:01 boinc_setup_complete
[2026-03-08 12:09:22] -rw-r--r-- 1 boinc boinc      6377 Mar  8 12:01 init_data.xml
[2026-03-08 12:09:22] -rw-r--r-- 1 boinc boinc         0 Mar  8 12:01 boinc_lockfile
[2026-03-08 12:09:22] -rw-r--r-- 1 boinc boinc      2614 Mar  8 12:01 pandaJob.out
[2026-03-08 12:09:22] -rw------- 1 boinc boinc    999169 Mar  8 12:01 agis_schedconf.cvmfs.json
[2026-03-08 12:09:22] -rw------- 1 boinc boinc   1521291 Mar  8 12:01 agis_ddmendpoints.agis.ALL.json
[2026-03-08 12:09:22] -rw------- 1 boinc boinc       428 Mar  8 12:01 workernode_map.json
[2026-03-08 12:09:22] drwx------ 5 boinc boinc      4096 Mar  8 12:01 pilot3
[2026-03-08 12:09:22] -rw-r--r-- 1 boinc boinc       526 Mar  8 12:06 boinc_task_state.xml
[2026-03-08 12:09:22] -rw------- 1 boinc boinc      1006 Mar  8 12:07 memory_monitor_summary.json
[2026-03-08 12:09:22] -rw------- 1 boinc boinc    115731 Mar  8 12:07 log.48967067._000229.job.log.tgz.1
[2026-03-08 12:09:22] -rw------- 1 boinc boinc        95 Mar  8 12:08 pilot_heartbeat.json
[2026-03-08 12:09:22] -rw------- 1 boinc boinc      8095 Mar  8 12:09 heartbeat.json
[2026-03-08 12:09:22] -rw-r--r-- 1 boinc boinc        24 Mar  8 12:09 wrapper_checkpoint.txt
[2026-03-08 12:09:22] -rw-r--r-- 1 boinc boinc      8192 Mar  8 12:09 boinc_mmap_file
[2026-03-08 12:09:22] -rw------- 1 boinc boinc      4552 Mar  8 12:09 pilotlog.txt
[2026-03-08 12:09:22] -rw------- 1 boinc boinc    122201 Mar  8 12:09 log.48967067._000229.job.log.1
[2026-03-08 12:09:22] -rw------- 1 boinc boinc       188 Mar  8 12:09 output.list
[2026-03-08 12:09:22] -rw-r--r-- 1 boinc boinc       620 Mar  8 12:09 runtime_log
[2026-03-08 12:09:22] -rw------- 1 boinc boinc    256000 Mar  8 12:09 result.tar.gz
[2026-03-08 12:09:22] -rw-r--r-- 1 boinc boinc      8748 Mar  8 12:09 runtime_log.err
[2026-03-08 12:09:22] -rw------- 1 boinc boinc       651 Mar  8 12:09 SNrMDmtxFJ9nsSi4ap6QjLDmwznN0nGgGQJmIVkRDmwTXLDmV4lQFo.diag
[2026-03-08 12:09:22] -rw-r--r-- 1 boinc boinc     11715 Mar  8 12:09 stderr.txt
[2026-03-08 12:09:22] No HITS result produced
[2026-03-08 12:09:22]  *** Contents of shared directory: ***
[2026-03-08 12:09:22] total 229368
[2026-03-08 12:09:22] -rw-r--r-- 2 boinc boinc 233995930 Mar  8 12:01 ATLAS.root_0
[2026-03-08 12:09:22] -rw-r--r-- 2 boinc boinc    597969 Mar  8 12:01 input.tar.gz
[2026-03-08 12:09:22] -rw-r--r-- 2 boinc boinc     15845 Mar  8 12:01 start_atlas.sh
[2026-03-08 12:09:22] -rw------- 1 boinc boinc    256000 Mar  8 12:09 result.tar.gz
12:09:23 (722599): run_atlas exited; CPU time 201.646325
12:09:23 (722599): called boinc_finish(0)

</stderr_txt>
]]>

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