Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:02:05 (3329858): wrapper (7.7.26015): starting
00:02:05 (3329858): wrapper: running run_atlas (--nthreads 12)
[2026-03-08 00:02:05] Arguments: --nthreads 12
[2026-03-08 00:02:05] Threads: 12
[2026-03-08 00:02:05] Checking for CVMFS
[2026-03-08 00:02:05] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-08 00:02:06] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-08 00:02:06] Running cvmfs_config stat atlas.cern.ch
[2026-03-08 00:02:07] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-08 00:02:07] 2.13.3.0 7236 105952 262144 157027 2 763 24662730 40960000 35078 16776704 0 400716498 99.652 356826982 34710 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2026-03-08 00:02:07] CVMFS is ok
[2026-03-08 00:02:07] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-08 00:02:07] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-08 00:02:07] Further information can be found at the LHC@home message board.
[2026-03-08 00:02:07] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-08 00:02:07] Checking for apptainer binary...
[2026-03-08 00:02:07] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-08 00:02:07] Running /usr/bin/apptainer --version
[2026-03-08 00:02:07] apptainer version 1.4.5-2.el9
[2026-03-08 00:02:07] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-08 00:02:08] c-212-11.aglt2.org
[2026-03-08 00:02:08] apptainer works
[2026-03-08 00:02:08] Set ATHENA_PROC_NUMBER=12
[2026-03-08 00:02:08] Set ATHENA_CORE_NUMBER=12
[2026-03-08 00:02:08] Starting ATLAS job with PandaID=7036016245
[2026-03-08 00:02:08] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/5 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-08 11:41:02]  *** The last 200 lines of the pilot log: ***
[2026-03-08 11:41:02] 2026-03-08 15:40:01,328 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-03-08 11:41:02] 2026-03-08 15:40:01,328 | INFO     | log transfer has been attempted: DONE
[2026-03-08 11:41:02] 2026-03-08 15:40:01,328 | INFO     | job 7036016245 has finished - writing final server update
[2026-03-08 11:41:02] 2026-03-08 15:40:01,329 | INFO     | total number of processed events: 400 (read)
[2026-03-08 11:41:02] 2026-03-08 15:40:01,343 | INFO     | using path: /tmp/boinchome/slots/5/PanDA_Pilot-7036016245/memory_monitor_summary.json (trf name=prmon)
[2026-03-08 11:41:02] 2026-03-08 15:40:01,344 | INFO     | extracted standard info from prmon json
[2026-03-08 11:41:02] 2026-03-08 15:40:01,344 | INFO     | extracted standard memory fields from prmon json
[2026-03-08 11:41:02] 2026-03-08 15:40:01,344 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-03-08 11:41:02] 2026-03-08 15:40:01,344 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-03-08 11:41:02] 2026-03-08 15:40:01,344 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-03-08 11:41:02] 2026-03-08 15:40:01,353 | INFO     | fitting pss+swap vs Time
[2026-03-08 11:41:02] 2026-03-08 15:40:01,354 | INFO     | sum of square deviations: 76434191222.07971
[2026-03-08 11:41:02] 2026-03-08 15:40:01,366 | INFO     | sum of deviations: 683260518962.9403
[2026-03-08 11:41:02] 2026-03-08 15:40:01,366 | INFO     | mean x: 1772965293.169059
[2026-03-08 11:41:02] 2026-03-08 15:40:01,367 | INFO     | mean y: 2658893.1515151514
[2026-03-08 11:41:02] 2026-03-08 15:40:01,367 | INFO     | intersect: -15846232381.098455
[2026-03-08 11:41:02] 2026-03-08 15:40:01,367 | INFO     | chi2: 4.844763038794493
[2026-03-08 11:41:02] 2026-03-08 15:40:01,368 | INFO     | sum of square deviations: 74620226749.43568
[2026-03-08 11:41:02] 2026-03-08 15:40:01,376 | INFO     | sum of deviations: 763680423418.6461
[2026-03-08 11:41:02] 2026-03-08 15:40:01,376 | INFO     | mean x: 1772965140.670418
[2026-03-08 11:41:02] 2026-03-08 15:40:01,376 | INFO     | mean y: 2665618.4372990355
[2026-03-08 11:41:02] 2026-03-08 15:40:01,376 | INFO     | intersect: -18142264091.84295
[2026-03-08 11:41:02] 2026-03-08 15:40:01,377 | INFO     | chi2: 3.4008721916260094
[2026-03-08 11:41:02] 2026-03-08 15:40:01,377 | INFO     | current chi2=3.4008721916260094 (change=29.803126295476417 %)
[2026-03-08 11:41:02] 2026-03-08 15:40:01,378 | INFO     | sum of square deviations: 72835193051.7894
[2026-03-08 11:41:02] 2026-03-08 15:40:01,397 | INFO     | sum of deviations: 755671169476.1013
[2026-03-08 11:41:02] 2026-03-08 15:40:01,398 | INFO     | mean x: 1772964988.171799
[2026-03-08 11:41:02] 2026-03-08 15:40:01,398 | INFO     | mean y: 2664934.17828201
[2026-03-08 11:41:02] 2026-03-08 15:40:01,398 | INFO     | intersect: -18391993882.738934
[2026-03-08 11:41:02] 2026-03-08 15:40:01,402 | INFO     | chi2: 3.395298359846222
[2026-03-08 11:41:02] 2026-03-08 15:40:01,403 | INFO     | current chi2=3.395298359846222 (change=0.16389418554192667 %)
[2026-03-08 11:41:02] 2026-03-08 15:40:01,403 | INFO     | right removable region: 616
[2026-03-08 11:41:02] 2026-03-08 15:40:01,403 | INFO     | sum of square deviations: 74620162089.43565
[2026-03-08 11:41:02] 2026-03-08 15:40:01,418 | INFO     | sum of deviations: 533533457441.53973
[2026-03-08 11:41:02] 2026-03-08 15:40:01,418 | INFO     | mean x: 1772965445.670418
[2026-03-08 11:41:02] 2026-03-08 15:40:01,418 | INFO     | mean y: 2671453.197749196
[2026-03-08 11:41:02] 2026-03-08 15:40:01,418 | INFO     | intersect: -12674014815.845337
[2026-03-08 11:41:02] 2026-03-08 15:40:01,419 | INFO     | chi2: 2.7484047410336956
[2026-03-08 11:41:02] 2026-03-08 15:40:01,419 | INFO     | current chi2=2.7484047410336956 (change=43.270605414014796 %)
[2026-03-08 11:41:02] 2026-03-08 15:40:01,420 | INFO     | sum of square deviations: 72835063731.7894
[2026-03-08 11:41:02] 2026-03-08 15:40:01,427 | INFO     | sum of deviations: 488687191308.59375
[2026-03-08 11:41:02] 2026-03-08 15:40:01,427 | INFO     | mean x: 1772965598.171799
[2026-03-08 11:41:02] 2026-03-08 15:40:01,427 | INFO     | mean y: 2675283.6547811995
[2026-03-08 11:41:02] 2026-03-08 15:40:01,428 | INFO     | intersect: -11893045459.418852
[2026-03-08 11:41:02] 2026-03-08 15:40:01,428 | INFO     | chi2: 2.6563107353315156
[2026-03-08 11:41:02] 2026-03-08 15:40:01,428 | INFO     | current chi2=2.6563107353315156 (change=3.3508167238695243 %)
[2026-03-08 11:41:02] 2026-03-08 15:40:01,428 | INFO     | left removable region: 20
[2026-03-08 11:41:02] 2026-03-08 15:40:01,429 | INFO     | sum of square deviations: 65648468474.14765
[2026-03-08 11:41:02] 2026-03-08 15:40:01,436 | INFO     | sum of deviations: 467233825558.04
[2026-03-08 11:41:02] 2026-03-08 15:40:01,437 | INFO     | mean x: 1772965567.6778524
[2026-03-08 11:41:02] 2026-03-08 15:40:01,437 | INFO     | mean y: 2690169.0939597315
[2026-03-08 11:41:02] 2026-03-08 15:40:01,437 | INFO     | intersect: -12615875107.794785
[2026-03-08 11:41:02] 2026-03-08 15:40:01,437 | INFO     | chi2: 0.9662473487302565
[2026-03-08 11:41:02] 2026-03-08 15:40:01,437 | INFO     | current memory leak: 7.12 B/s (using 596 data points, chi2=0.97)
[2026-03-08 11:41:02] 2026-03-08 15:40:01,438 | INFO     | could have reported an average CPU frequency of 3207 MHz (25 samples)
[2026-03-08 11:41:02] 2026-03-08 15:40:01,439 | INFO     | ..............................
[2026-03-08 11:41:02] 2026-03-08 15:40:01,439 | INFO     | . Timing measurements:
[2026-03-08 11:41:02] 2026-03-08 15:40:01,439 | INFO     | . get job = 0 s
[2026-03-08 11:41:02] 2026-03-08 15:40:01,439 | INFO     | . initial setup = 15 s
[2026-03-08 11:41:02] 2026-03-08 15:40:01,439 | INFO     | . payload setup = 17 s
[2026-03-08 11:41:02] 2026-03-08 15:40:01,439 | INFO     | . stage-in = 0 s
[2026-03-08 11:41:02] 2026-03-08 15:40:01,439 | INFO     | . payload execution = 38206 s
[2026-03-08 11:41:02] 2026-03-08 15:40:01,439 | INFO     | . stage-out = 2 s
[2026-03-08 11:41:02] 2026-03-08 15:40:01,439 | INFO     | . log creation = 0 s
[2026-03-08 11:41:02] 2026-03-08 15:40:01,439 | INFO     | ..............................
[2026-03-08 11:41:02] 2026-03-08 15:40:01,513 | INFO     | 
[2026-03-08 11:41:02] 2026-03-08 15:40:01,513 | INFO     | job summary report
[2026-03-08 11:41:02] 2026-03-08 15:40:01,513 | INFO     | --------------------------------------------------
[2026-03-08 11:41:02] 2026-03-08 15:40:01,513 | INFO     | PanDA job id: 7036016245
[2026-03-08 11:41:02] 2026-03-08 15:40:01,513 | INFO     | task id: 48846880
[2026-03-08 11:41:02] 2026-03-08 15:40:01,513 | INFO     | errors: (none)
[2026-03-08 11:41:02] 2026-03-08 15:40:01,513 | INFO     | status: LOG_TRANSFER = DONE 
[2026-03-08 11:41:02] 2026-03-08 15:40:01,513 | INFO     | pilot state: finished 
[2026-03-08 11:41:02] 2026-03-08 15:40:01,513 | INFO     | transexitcode: 0
[2026-03-08 11:41:02] 2026-03-08 15:40:01,513 | INFO     | exeerrorcode: 0
[2026-03-08 11:41:02] 2026-03-08 15:40:01,514 | INFO     | exeerrordiag: 
[2026-03-08 11:41:02] 2026-03-08 15:40:01,514 | INFO     | exitcode: 0
[2026-03-08 11:41:02] 2026-03-08 15:40:01,514 | INFO     | exitmsg: OK
[2026-03-08 11:41:02] 2026-03-08 15:40:01,514 | INFO     | cpuconsumptiontime: 94631 s
[2026-03-08 11:41:02] 2026-03-08 15:40:01,514 | INFO     | nevents: 400
[2026-03-08 11:41:02] 2026-03-08 15:40:01,514 | INFO     | neventsw: 0
[2026-03-08 11:41:02] 2026-03-08 15:40:01,514 | INFO     | pid: 3339870
[2026-03-08 11:41:02] 2026-03-08 15:40:01,514 | INFO     | pgrp: 3339870
[2026-03-08 11:41:02] 2026-03-08 15:40:01,514 | INFO     | corecount: 12
[2026-03-08 11:41:02] 2026-03-08 15:40:01,514 | INFO     | event service: False
[2026-03-08 11:41:02] 2026-03-08 15:40:01,514 | INFO     | sizes: {0: 2295445, 1: 2295906, 38227: 2336778, 38228: 2336777, 38230: 2345831, 38234: 2345887, 38235: 2346273}
[2026-03-08 11:41:02] 2026-03-08 15:40:01,514 | INFO     | --------------------------------------------------
[2026-03-08 11:41:02] 2026-03-08 15:40:01,514 | INFO     | 
[2026-03-08 11:41:02] 2026-03-08 15:40:01,514 | INFO     | executing command: ls -lF /tmp/boinchome/slots/5
[2026-03-08 11:41:02] 2026-03-08 15:40:01,535 | INFO     | queue jobs had 0 job(s) [purged]
[2026-03-08 11:41:02] 2026-03-08 15:40:01,536 | INFO     | queue payloads had 0 job(s) [purged]
[2026-03-08 11:41:02] 2026-03-08 15:40:01,536 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-08 11:41:02] 2026-03-08 15:40:01,536 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-08 11:41:02] 2026-03-08 15:40:01,536 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-08 11:41:02] 2026-03-08 15:40:01,536 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-08 11:41:02] 2026-03-08 15:40:01,536 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-08 11:41:02] 2026-03-08 15:40:01,536 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-08 11:41:02] 2026-03-08 15:40:01,536 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-08 11:41:02] 2026-03-08 15:40:01,536 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-08 11:41:02] 2026-03-08 15:40:01,536 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-08 11:41:02] 2026-03-08 15:40:01,536 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-08 11:41:02] 2026-03-08 15:40:01,537 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-08 11:41:02] 2026-03-08 15:40:01,537 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-08 11:41:02] 2026-03-08 15:40:01,537 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-08 11:41:02] 2026-03-08 15:40:01,537 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-08 11:41:02] 2026-03-08 15:40:01,537 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-08 11:41:02] 2026-03-08 15:40:01,537 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-08 11:41:02] 2026-03-08 15:40:01,537 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-08 11:41:02] 2026-03-08 15:40:01,537 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-08 11:41:02] 2026-03-08 15:40:01,537 | INFO     | job 7036016245 has completed (purged errors)
[2026-03-08 11:41:02] 2026-03-08 15:40:01,538 | INFO     | overall cleanup function is called
[2026-03-08 11:41:02] 2026-03-08 15:40:02,548 | INFO     | --- collectZombieJob: --- 10, [3339870]
[2026-03-08 11:41:02] 2026-03-08 15:40:02,548 | INFO     | zombie collector waiting for pid 3339870
[2026-03-08 11:41:02] 2026-03-08 15:40:02,549 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-08 11:41:02] 2026-03-08 15:40:02,549 | INFO     | collected zombie processes
[2026-03-08 11:41:02] 2026-03-08 15:40:02,549 | INFO     | will attempt to kill all subprocesses of pid=3339870
[2026-03-08 11:41:02] 2026-03-08 15:40:03,143 | INFO     | process IDs to be killed: [3339870] (in reverse order)
[2026-03-08 11:41:02] 2026-03-08 15:40:03,343 | WARNING  | found no corresponding commands to process id(s)
[2026-03-08 11:41:02] 2026-03-08 15:40:03,343 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-08 11:41:02] 2026-03-08 15:40:03,371 | INFO     | did not find any defunct processes belonging to 3339870
[2026-03-08 11:41:02] 2026-03-08 15:40:03,395 | INFO     | did not find any defunct processes belonging to 3339870
[2026-03-08 11:41:02] 2026-03-08 15:40:03,395 | INFO     | ready for new job
[2026-03-08 11:41:02] 2026-03-08 15:40:03,395 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-08 11:41:02] 2026-03-08 15:40:03,398 | INFO     | **************************************
[2026-03-08 11:41:02] 2026-03-08 15:40:03,398 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-03-08 11:41:02] 2026-03-08 15:40:03,398 | INFO     | **************************************
[2026-03-08 11:41:02] 2026-03-08 15:40:03,398 | INFO     | 
[2026-03-08 11:41:02] 2026-03-08 15:40:03,403 | INFO     | architecture information:
[2026-03-08 11:41:02] 2026-03-08 15:40:03,404 | INFO     | executing command: cat /etc/os-release
[2026-03-08 11:41:02] 2026-03-08 15:40:03,425 | INFO     | cat /etc/os-release:
[2026-03-08 11:41:02] NAME="CentOS Linux"
[2026-03-08 11:41:02] VERSION="7 (Core)"
[2026-03-08 11:41:02] ID="centos"
[2026-03-08 11:41:02] ID_LIKE="rhel fedora"
[2026-03-08 11:41:02] VERSION_ID="7"
[2026-03-08 11:41:02] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-08 11:41:02] ANSI_COLOR="0;31"
[2026-03-08 11:41:02] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-08 11:41:02] HOME_URL="https://www.centos.org/"
[2026-03-08 11:41:02] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-08 11:41:02] 
[2026-03-08 11:41:02] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-08 11:41:02] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-08 11:41:02] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-08 11:41:02] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-08 11:41:02] 
[2026-03-08 11:41:02] 2026-03-08 15:40:03,426 | INFO     | **************************************
[2026-03-08 11:41:02] 2026-03-08 15:40:03,930 | INFO     | executing command: df -mP /tmp/boinchome/slots/5
[2026-03-08 11:41:02] 2026-03-08 15:40:03,949 | INFO     | sufficient remaining disk space (124907421696 B)
[2026-03-08 11:41:02] 2026-03-08 15:40:03,949 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-08 11:41:02] 2026-03-08 15:40:03,949 | INFO     | current server update state: UPDATING_FINAL
[2026-03-08 11:41:02] 2026-03-08 15:40:03,949 | INFO     | update_server=False
[2026-03-08 11:41:02] 2026-03-08 15:40:03,949 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-08 11:41:02] 2026-03-08 15:40:03,950 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-08 11:41:02] 2026-03-08 15:40:03,950 | INFO     | aborting loop
[2026-03-08 11:41:02] 2026-03-08 15:40:04,193 | INFO     | all data control threads have been joined
[2026-03-08 11:41:02] 2026-03-08 15:40:04,409 | INFO     | all job control threads have been joined
[2026-03-08 11:41:02] 2026-03-08 15:40:04,691 | INFO     | all payload control threads have been joined
[2026-03-08 11:41:02] 2026-03-08 15:40:04,955 | INFO     | [job] retrieve thread has finished
[2026-03-08 11:41:02] 2026-03-08 15:40:04,956 | INFO     | [job] job monitor thread has finished
[2026-03-08 11:41:02] 2026-03-08 15:40:04,978 | INFO     | [job] validate thread has finished
[2026-03-08 11:41:02] 2026-03-08 15:40:05,077 | INFO     | [payload] validate_post thread has finished
[2026-03-08 11:41:02] 2026-03-08 15:40:05,199 | INFO     | [data] control thread has finished
[2026-03-08 11:41:02] 2026-03-08 15:40:05,217 | INFO     | [payload] validate_pre thread has finished
[2026-03-08 11:41:02] 2026-03-08 15:40:05,232 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-08 11:41:02] 2026-03-08 15:40:05,418 | INFO     | [job] control thread has finished
[2026-03-08 11:41:02] 2026-03-08 15:40:05,699 | INFO     | [payload] control thread has finished
[2026-03-08 11:41:02] 2026-03-08 15:40:05,742 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-08 11:41:02] 2026-03-08 15:40:05,810 | INFO     | [payload] execute_payloads thread has finished
[2026-03-08 11:41:02] 2026-03-08 15:40:06,022 | INFO     | [data] copytool_in thread has finished
[2026-03-08 11:41:02] 2026-03-08 15:40:06,095 | INFO     | [job] create_data_payload thread has finished
[2026-03-08 11:41:02] 2026-03-08 15:40:06,129 | INFO     | [payload] failed_post thread has finished
[2026-03-08 11:41:02] 2026-03-08 15:40:06,527 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-08 11:41:02] 2026-03-08 15:40:06,712 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-08 11:41:02] 2026-03-08 15:40:07,238 | INFO     | [data] copytool_out thread has finished
[2026-03-08 11:41:02] 2026-03-08 15:40:07,533 | INFO     | [job] queue monitor thread has finished
[2026-03-08 11:41:02] 2026-03-08 15:40:10,724 | INFO     | [data] queue_monitor thread has finished
[2026-03-08 11:41:02] 2026-03-08 15:40:34,014 | INFO     | PID=3333656 has CPU usage=9.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-03-08 11:41:02] 2026-03-08 15:40:34,014 | INFO     | .. there are 45 such processes running
[2026-03-08 11:41:02] 2026-03-08 15:40:34,014 | INFO     | found 0 job(s) in 20 queues
[2026-03-08 11:41:02] 2026-03-08 15:40:34,014 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-08 11:41:02] 2026-03-08 15:40:34,015 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-08 11:41:02] 2026-03-08 15:40:55,245 | INFO     | [monitor] cgroup control has ended
[2026-03-08 11:41:02] 2026-03-08 15:40:57,130 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140517543868224)>', '<ExcThread(monitor, started 140517077665536)>']
[2026-03-08 11:41:02] 2026-03-08 15:40:57,169 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-08 11:41:02] 2026-03-08 15:40:57,169 | INFO     | [monitor] control thread has ended
[2026-03-08 11:41:02] 2026-03-08 15:41:02,156 | INFO     | all workflow threads have been joined
[2026-03-08 11:41:02] 2026-03-08 15:41:02,156 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-08 11:41:02] 2026-03-08 15:41:02,157 | INFO     | traces error code: 0
[2026-03-08 11:41:02] 2026-03-08 15:41:02,157 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-08 11:41:02] 2026-03-08 15:41:02,298 [wrapper] ==== pilot stdout END ====
[2026-03-08 11:41:02] 2026-03-08 15:41:02,301 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-08 11:41:02] 2026-03-08 15:41:02,304 [wrapper] pilotpid: 3333656
[2026-03-08 11:41:02] 2026-03-08 15:41:02,306 [wrapper] Pilot exit status: 0
[2026-03-08 11:41:02] 2026-03-08 15:41:02,397 [wrapper] pandaids: 7036016245
[2026-03-08 11:41:02] 2026-03-08 15:41:02,548 [wrapper] cleanup supervisor_pilot 1298184 3333657
[2026-03-08 11:41:02] 2026-03-08 15:41:02,570 [wrapper] Test setup, not cleaning
[2026-03-08 11:41:02] 2026-03-08 15:41:02,593 [wrapper] apfmon messages muted
[2026-03-08 11:41:02] 2026-03-08 15:41:02,605 [wrapper] ==== wrapper stdout END ====
[2026-03-08 11:41:02] 2026-03-08 15:41:02,608 [wrapper] ==== wrapper stderr END ====
[2026-03-08 11:41:02]  *** Error codes and diagnostics ***
[2026-03-08 11:41:02]     "exeErrorCode": 0,
[2026-03-08 11:41:02]     "exeErrorDiag": "",
[2026-03-08 11:41:02]     "pilotErrorCode": 0,
[2026-03-08 11:41:02]     "pilotErrorDiag": "",
[2026-03-08 11:41:02]  *** Listing of results directory ***
[2026-03-08 11:41:02] total 591428
[2026-03-08 11:41:02] -rw-r--r--. 1 boincer umatlas    584627 Mar  2 09:48 pilot3.tar.gz
[2026-03-08 11:41:02] -rwx------. 1 boincer umatlas     36322 Mar  2 09:51 runpilot2-wrapper.sh
[2026-03-08 11:41:02] -rw-r--r--. 1 boincer umatlas      5111 Mar  2 09:52 queuedata.json
[2026-03-08 11:41:02] -rw-r--r--. 1 boincer umatlas       100 Mar  8 00:02 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-08 11:41:02] -rwxr-xr-x. 1 boincer umatlas      7986 Mar  8 00:02 run_atlas
[2026-03-08 11:41:02] -rw-r--r--. 1 boincer umatlas       105 Mar  8 00:02 job.xml
[2026-03-08 11:41:02] -rw-r--r--. 2 boincer umatlas 287110408 Mar  8 00:02 EVNT.48452486._000001.pool.root.1
[2026-03-08 11:41:02] -rw-r--r--. 2 boincer umatlas     15845 Mar  8 00:02 start_atlas.sh
[2026-03-08 11:41:02] drwxrwx--x. 2 boincer umatlas      4096 Mar  8 00:02 shared
[2026-03-08 11:41:02] -rw-r--r--. 2 boincer umatlas    597965 Mar  8 00:02 input.tar.gz
[2026-03-08 11:41:02] -rw-r--r--. 1 boincer umatlas         0 Mar  8 00:02 boinc_lockfile
[2026-03-08 11:41:02] -rw-r--r--. 1 boincer umatlas      2615 Mar  8 00:02 pandaJob.out
[2026-03-08 11:41:02] -rw-------. 1 boincer umatlas        57 Mar  8 00:02 setup.sh.local
[2026-03-08 11:41:02] -rw-------. 1 boincer umatlas    999169 Mar  8 00:02 agis_schedconf.cvmfs.json
[2026-03-08 11:41:02] -rw-------. 1 boincer umatlas       429 Mar  8 00:02 workernode_map.json
[2026-03-08 11:41:02] drwx------. 5 boincer umatlas      4096 Mar  8 00:02 pilot3
[2026-03-08 11:41:02] -rw-------. 1 boincer umatlas 304130546 Mar  8 11:37 HITS.48846880._000020.pool.root.1
[2026-03-08 11:41:02] -rw-r--r--. 1 boincer umatlas       531 Mar  8 11:37 boinc_task_state.xml
[2026-03-08 11:41:02] -rw-------. 1 boincer umatlas        95 Mar  8 11:39 pilot_heartbeat.json
[2026-03-08 11:41:02] -rw-------. 1 boincer umatlas      1044 Mar  8 11:39 memory_monitor_summary.json
[2026-03-08 11:41:02] -rw-------. 1 boincer umatlas   1521291 Mar  8 11:39 agis_ddmendpoints.agis.ALL.json
[2026-03-08 11:41:02] -rw-------. 1 boincer umatlas    800243 Mar  8 11:39 log.48846880._000020.job.log.tgz.1
[2026-03-08 11:41:02] -rw-------. 1 boincer umatlas      6345 Mar  8 11:40 heartbeat.json
[2026-03-08 11:41:02] -rw-r--r--. 1 boincer umatlas      6959 Mar  8 11:40 init_data.xml
[2026-03-08 11:41:02] -rw-r--r--. 1 boincer umatlas        28 Mar  8 11:41 wrapper_checkpoint.txt
[2026-03-08 11:41:02] -rw-r--r--. 1 boincer umatlas      8192 Mar  8 11:41 boinc_mmap_file
[2026-03-08 11:41:02] -rw-------. 1 boincer umatlas      4821 Mar  8 11:41 pilotlog.txt
[2026-03-08 11:41:02] -rw-------. 1 boincer umatlas   4419648 Mar  8 11:41 log.48846880._000020.job.log.1
[2026-03-08 11:41:02] -rw-------. 1 boincer umatlas       357 Mar  8 11:41 output.list
[2026-03-08 11:41:02] -rw-r--r--. 1 boincer umatlas       620 Mar  8 11:41 runtime_log
[2026-03-08 11:41:02] -rw-------. 1 boincer umatlas   5232640 Mar  8 11:41 result.tar.gz
[2026-03-08 11:41:02] -rw-r--r--. 1 boincer umatlas      9344 Mar  8 11:41 runtime_log.err
[2026-03-08 11:41:02] -rw-------. 1 boincer umatlas       661 Mar  8 11:41 5ZKMDmpnJH9nsSi4ap6QjLDmwznN0nGgGQJmIVkRDmJnDLDmI4I0Vn.diag
[2026-03-08 11:41:02] -rw-r--r--. 1 boincer umatlas     21154 Mar  8 11:41 stderr.txt
[2026-03-08 11:41:02] HITS file was successfully produced:
[2026-03-08 11:41:02] -rw-------. 1 boincer umatlas 304130546 Mar  8 11:37 shared/HITS.pool.root.1
[2026-03-08 11:41:02]  *** Contents of shared directory: ***
[2026-03-08 11:41:02] total 583108
[2026-03-08 11:41:02] -rw-r--r--. 2 boincer umatlas 287110408 Mar  8 00:02 ATLAS.root_0
[2026-03-08 11:41:02] -rw-r--r--. 2 boincer umatlas     15845 Mar  8 00:02 start_atlas.sh
[2026-03-08 11:41:02] -rw-r--r--. 2 boincer umatlas    597965 Mar  8 00:02 input.tar.gz
[2026-03-08 11:41:02] -rw-------. 1 boincer umatlas 304130546 Mar  8 11:37 HITS.pool.root.1
[2026-03-08 11:41:02] -rw-------. 1 boincer umatlas   5232640 Mar  8 11:41 result.tar.gz
11:41:04 (3329858): run_atlas exited; CPU time 96399.597182
11:41:04 (3329858): called boinc_finish(0)

</stderr_txt>
]]>

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