Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
08:25:12 (1978184): wrapper (7.7.26015): starting
08:25:12 (1978184): wrapper: running run_atlas (--nthreads 4)
[2026-03-09 08:25:12] Arguments: --nthreads 4
[2026-03-09 08:25:12] Threads: 4
[2026-03-09 08:25:12] Checking for CVMFS
[2026-03-09 08:25:12] No cvmfs_config command found, will try listing directly
[2026-03-09 08:25:12] CVMFS is ok
[2026-03-09 08:25:12] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-09 08:25:12] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-09 08:25:12] Further information can be found at the LHC@home message board.
[2026-03-09 08:25:12] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-09 08:25:12] Checking for apptainer binary...
[2026-03-09 08:25:12] which: no apptainer in ((null))
[2026-03-09 08:25:12] apptainer is not installed, using version from CVMFS
[2026-03-09 08:25:12] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-09 08:25:12] WARNING: Environment variable TMPDIR already has value [/var/lib/boinc/var/slot80/slots/1/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut24.grid.cesnet.cz
[2026-03-09 08:25:12] apptainer works
[2026-03-09 08:25:12] Set ATHENA_PROC_NUMBER=4
[2026-03-09 08:25:12] Set ATHENA_CORE_NUMBER=4
[2026-03-09 08:25:12] Starting ATLAS job with PandaID=7045813840
[2026-03-09 08:25:12] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc/var/slot80/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-09 10:15:41]  *** The last 200 lines of the pilot log: ***
[2026-03-09 10:15:41] 2026-03-09 09:14:50,148 | INFO     | extracted standard memory fields from prmon json
[2026-03-09 10:15:41] 2026-03-09 09:14:50,148 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-03-09 10:15:41] 2026-03-09 09:14:50,148 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-03-09 10:15:41] 2026-03-09 09:14:50,148 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-03-09 10:15:41] 2026-03-09 09:14:50,150 | INFO     | fitting pss+swap vs Time
[2026-03-09 10:15:41] 2026-03-09 09:14:50,150 | INFO     | sum of square deviations: 390582207.0
[2026-03-09 10:15:41] 2026-03-09 09:14:50,150 | INFO     | sum of deviations: 2951778897.999999
[2026-03-09 10:15:41] 2026-03-09 09:14:50,150 | INFO     | mean x: 1773044408.5
[2026-03-09 10:15:41] 2026-03-09 09:14:50,150 | INFO     | mean y: 2308238.1481481483
[2026-03-09 10:15:41] 2026-03-09 09:14:50,150 | INFO     | intersect: -13397265466.004715
[2026-03-09 10:15:41] 2026-03-09 09:14:50,150 | INFO     | chi2: 1.927750318459894
[2026-03-09 10:15:41] 2026-03-09 09:14:50,151 | INFO     | sum of square deviations: 338804492.0
[2026-03-09 10:15:41] 2026-03-09 09:14:50,151 | INFO     | sum of deviations: 9486497411.000002
[2026-03-09 10:15:41] 2026-03-09 09:14:50,151 | INFO     | mean x: 1773044256.0
[2026-03-09 10:15:41] 2026-03-09 09:14:50,151 | INFO     | mean y: 2326729.776699029
[2026-03-09 10:15:41] 2026-03-09 09:14:50,151 | INFO     | intersect: -49642763997.4514
[2026-03-09 10:15:41] 2026-03-09 09:14:50,151 | INFO     | chi2: 1.1102006342410762
[2026-03-09 10:15:41] 2026-03-09 09:14:50,151 | INFO     | current chi2=1.1102006342410762 (change=42.409521419349026 %)
[2026-03-09 10:15:41] 2026-03-09 09:14:50,151 | INFO     | sum of square deviations: 291817564.5
[2026-03-09 10:15:41] 2026-03-09 09:14:50,151 | INFO     | sum of deviations: 9045051909.5
[2026-03-09 10:15:41] 2026-03-09 09:14:50,152 | INFO     | mean x: 1773044103.5
[2026-03-09 10:15:41] 2026-03-09 09:14:50,152 | INFO     | mean y: 2325295.948979592
[2026-03-09 10:15:41] 2026-03-09 09:14:50,152 | INFO     | intersect: -54954188310.312675
[2026-03-09 10:15:41] 2026-03-09 09:14:50,152 | INFO     | chi2: 1.1120986620435809
[2026-03-09 10:15:41] 2026-03-09 09:14:50,152 | INFO     | current chi2=1.1120986620435809 (change=-0.17096259396412378 %)
[2026-03-09 10:15:41] 2026-03-09 09:14:50,152 | INFO     | right removable region: 97
[2026-03-09 10:15:41] 2026-03-09 09:14:50,152 | INFO     | sum of square deviations: 338804492.0
[2026-03-09 10:15:41] 2026-03-09 09:14:50,152 | INFO     | sum of deviations: -7089023134.0
[2026-03-09 10:15:41] 2026-03-09 09:14:50,152 | INFO     | mean x: 1773044561.0
[2026-03-09 10:15:41] 2026-03-09 09:14:50,152 | INFO     | mean y: 2336893.504854369
[2026-03-09 10:15:41] 2026-03-09 09:14:50,152 | INFO     | intersect: 37100882536.58291
[2026-03-09 10:15:41] 2026-03-09 09:14:50,152 | INFO     | chi2: 0.8499446979471081
[2026-03-09 10:15:41] 2026-03-09 09:14:50,152 | INFO     | current chi2=0.8499446979471081 (change=55.910021655390494 %)
[2026-03-09 10:15:41] 2026-03-09 09:14:50,152 | INFO     | sum of square deviations: 291817564.5
[2026-03-09 10:15:41] 2026-03-09 09:14:50,153 | INFO     | sum of deviations: -6798930527.5
[2026-03-09 10:15:41] 2026-03-09 09:14:50,153 | INFO     | mean x: 1773044713.5
[2026-03-09 10:15:41] 2026-03-09 09:14:50,153 | INFO     | mean y: 2335947.5
[2026-03-09 10:15:41] 2026-03-09 09:14:50,153 | INFO     | intersect: 41311733652.50909
[2026-03-09 10:15:41] 2026-03-09 09:14:50,153 | INFO     | chi2: 0.8511427392835595
[2026-03-09 10:15:41] 2026-03-09 09:14:50,153 | INFO     | current chi2=0.8511427392835595 (change=-0.1409552103031013 %)
[2026-03-09 10:15:41] 2026-03-09 09:14:50,153 | INFO     | left removable region: 20
[2026-03-09 10:15:41] 2026-03-09 09:14:50,153 | INFO     | sum of square deviations: 141539398.0
[2026-03-09 10:15:41] 2026-03-09 09:14:50,153 | INFO     | sum of deviations: -328263997.00000006
[2026-03-09 10:15:41] 2026-03-09 09:14:50,153 | INFO     | mean x: 1773044683.0
[2026-03-09 10:15:41] 2026-03-09 09:14:50,153 | INFO     | mean y: 2357894.2337662335
[2026-03-09 10:15:41] 2026-03-09 09:14:50,153 | INFO     | intersect: 4114476094.010044
[2026-03-09 10:15:41] 2026-03-09 09:14:50,153 | INFO     | chi2: 8.851475952456001e-05
[2026-03-09 10:15:41] 2026-03-09 09:14:50,153 | INFO     | current memory leak: -2.32 B/s (using 77 data points, chi2=0.00)
[2026-03-09 10:15:41] 2026-03-09 09:14:50,153 | INFO     | could have reported an average CPU frequency of 3559 MHz (7 samples)
[2026-03-09 10:15:41] 2026-03-09 09:14:50,154 | INFO     | ..............................
[2026-03-09 10:15:41] 2026-03-09 09:14:50,154 | INFO     | . Timing measurements:
[2026-03-09 10:15:41] 2026-03-09 09:14:50,154 | INFO     | . get job = 0 s
[2026-03-09 10:15:41] 2026-03-09 09:14:50,154 | INFO     | . initial setup = 4 s
[2026-03-09 10:15:41] 2026-03-09 09:14:50,154 | INFO     | . payload setup = 5 s
[2026-03-09 10:15:41] 2026-03-09 09:14:50,154 | INFO     | . stage-in = 0 s
[2026-03-09 10:15:41] 2026-03-09 09:14:50,154 | INFO     | . payload execution = 6543 s
[2026-03-09 10:15:41] 2026-03-09 09:14:50,154 | INFO     | . stage-out = 0 s
[2026-03-09 10:15:41] 2026-03-09 09:14:50,154 | INFO     | . log creation = 0 s
[2026-03-09 10:15:41] 2026-03-09 09:14:50,154 | INFO     | ..............................
[2026-03-09 10:15:41] 2026-03-09 09:14:50,200 | INFO     | 
[2026-03-09 10:15:41] 2026-03-09 09:14:50,200 | INFO     | job summary report
[2026-03-09 10:15:41] 2026-03-09 09:14:50,200 | INFO     | --------------------------------------------------
[2026-03-09 10:15:41] 2026-03-09 09:14:50,200 | INFO     | PanDA job id: 7045813840
[2026-03-09 10:15:41] 2026-03-09 09:14:50,200 | INFO     | task id: 48997948
[2026-03-09 10:15:41] 2026-03-09 09:14:50,200 | INFO     | errors: (none)
[2026-03-09 10:15:41] 2026-03-09 09:14:50,200 | INFO     | status: LOG_TRANSFER = DONE 
[2026-03-09 10:15:41] 2026-03-09 09:14:50,200 | INFO     | pilot state: finished 
[2026-03-09 10:15:41] 2026-03-09 09:14:50,200 | INFO     | transexitcode: 0
[2026-03-09 10:15:41] 2026-03-09 09:14:50,200 | INFO     | exeerrorcode: 0
[2026-03-09 10:15:41] 2026-03-09 09:14:50,200 | INFO     | exeerrordiag: 
[2026-03-09 10:15:41] 2026-03-09 09:14:50,200 | INFO     | exitcode: 0
[2026-03-09 10:15:41] 2026-03-09 09:14:50,200 | INFO     | exitmsg: OK
[2026-03-09 10:15:41] 2026-03-09 09:14:50,200 | INFO     | cpuconsumptiontime: 25041 s
[2026-03-09 10:15:41] 2026-03-09 09:14:50,200 | INFO     | nevents: 400
[2026-03-09 10:15:41] 2026-03-09 09:14:50,201 | INFO     | neventsw: 0
[2026-03-09 10:15:41] 2026-03-09 09:14:50,201 | INFO     | pid: 1988578
[2026-03-09 10:15:41] 2026-03-09 09:14:50,201 | INFO     | pgrp: 1988578
[2026-03-09 10:15:41] 2026-03-09 09:14:50,201 | INFO     | corecount: 4
[2026-03-09 10:15:41] 2026-03-09 09:14:50,201 | INFO     | event service: False
[2026-03-09 10:15:41] 2026-03-09 09:14:50,201 | INFO     | sizes: {0: 2279825, 1: 2280286, 11: 2280286, 6552: 2307504, 6553: 2316524, 6555: 2316902}
[2026-03-09 10:15:41] 2026-03-09 09:14:50,201 | INFO     | --------------------------------------------------
[2026-03-09 10:15:41] 2026-03-09 09:14:50,201 | INFO     | 
[2026-03-09 10:15:41] 2026-03-09 09:14:50,201 | INFO     | executing command: ls -lF /var/lib/boinc/var/slot80/slots/1
[2026-03-09 10:15:41] 2026-03-09 09:14:50,219 | INFO     | queue jobs had 0 job(s) [purged]
[2026-03-09 10:15:41] 2026-03-09 09:14:50,219 | INFO     | queue payloads had 0 job(s) [purged]
[2026-03-09 10:15:41] 2026-03-09 09:14:50,219 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-09 10:15:41] 2026-03-09 09:14:50,219 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-09 10:15:41] 2026-03-09 09:14:50,219 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-09 10:15:41] 2026-03-09 09:14:50,219 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-09 10:15:41] 2026-03-09 09:14:50,219 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-09 10:15:41] 2026-03-09 09:14:50,220 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-09 10:15:41] 2026-03-09 09:14:50,220 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-09 10:15:41] 2026-03-09 09:14:50,220 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-09 10:15:41] 2026-03-09 09:14:50,220 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-09 10:15:41] 2026-03-09 09:14:50,220 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-09 10:15:41] 2026-03-09 09:14:50,220 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-09 10:15:41] 2026-03-09 09:14:50,220 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-09 10:15:41] 2026-03-09 09:14:50,220 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-09 10:15:41] 2026-03-09 09:14:50,220 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-09 10:15:41] 2026-03-09 09:14:50,220 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-09 10:15:41] 2026-03-09 09:14:50,220 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-09 10:15:41] 2026-03-09 09:14:50,220 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-09 10:15:41] 2026-03-09 09:14:50,220 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-09 10:15:41] 2026-03-09 09:14:50,220 | INFO     | job 7045813840 has completed (purged errors)
[2026-03-09 10:15:41] 2026-03-09 09:14:50,220 | INFO     | overall cleanup function is called
[2026-03-09 10:15:41] 2026-03-09 09:14:50,906 | WARNING  | process 1988578 can no longer be monitored (due to stat problems) - aborting
[2026-03-09 10:15:41] 2026-03-09 09:14:51,227 | INFO     | --- collectZombieJob: --- 10, [1988578]
[2026-03-09 10:15:41] 2026-03-09 09:14:51,227 | INFO     | zombie collector waiting for pid 1988578
[2026-03-09 10:15:41] 2026-03-09 09:14:51,227 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-09 10:15:41] 2026-03-09 09:14:51,227 | INFO     | collected zombie processes
[2026-03-09 10:15:41] 2026-03-09 09:14:51,227 | INFO     | will attempt to kill all subprocesses of pid=1988578
[2026-03-09 10:15:41] 2026-03-09 09:14:51,284 | INFO     | using path: /var/lib/boinc/var/slot80/slots/1/memory_monitor_summary.json (trf name=prmon)
[2026-03-09 10:15:41] 2026-03-09 09:14:52,288 | INFO     | process IDs to be killed: [1988578] (in reverse order)
[2026-03-09 10:15:41] 2026-03-09 09:14:52,467 | INFO     | number of running child processes to parent process 1988578: 1
[2026-03-09 10:15:41] 2026-03-09 09:14:52,467 | INFO     | maximum number of monitored processes: 6
[2026-03-09 10:15:41] 2026-03-09 09:14:52,467 | INFO     | aborting job monitoring since job object (job id=7045813840) has expired
[2026-03-09 10:15:41] 2026-03-09 09:14:52,566 | WARNING  | found no corresponding commands to process id(s)
[2026-03-09 10:15:41] 2026-03-09 09:14:52,566 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-09 10:15:41] 2026-03-09 09:14:52,596 | INFO     | did not find any defunct processes belonging to 1988578
[2026-03-09 10:15:41] 2026-03-09 09:14:52,624 | INFO     | did not find any defunct processes belonging to 1988578
[2026-03-09 10:15:41] 2026-03-09 09:14:52,624 | INFO     | ready for new job
[2026-03-09 10:15:41] 2026-03-09 09:14:52,624 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-09 10:15:41] 2026-03-09 09:14:52,625 | INFO     | **************************************
[2026-03-09 10:15:41] 2026-03-09 09:14:52,625 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-03-09 10:15:41] 2026-03-09 09:14:52,625 | INFO     | **************************************
[2026-03-09 10:15:41] 2026-03-09 09:14:52,625 | INFO     | 
[2026-03-09 10:15:41] 2026-03-09 09:14:52,630 | INFO     | architecture information:
[2026-03-09 10:15:41] 2026-03-09 09:14:52,630 | INFO     | executing command: cat /etc/os-release
[2026-03-09 10:15:41] 2026-03-09 09:14:52,641 | INFO     | cat /etc/os-release:
[2026-03-09 10:15:41] NAME="CentOS Linux"
[2026-03-09 10:15:41] VERSION="7 (Core)"
[2026-03-09 10:15:41] ID="centos"
[2026-03-09 10:15:41] ID_LIKE="rhel fedora"
[2026-03-09 10:15:41] VERSION_ID="7"
[2026-03-09 10:15:41] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-09 10:15:41] ANSI_COLOR="0;31"
[2026-03-09 10:15:41] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-09 10:15:41] HOME_URL="https://www.centos.org/"
[2026-03-09 10:15:41] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-09 10:15:41] 
[2026-03-09 10:15:41] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-09 10:15:41] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-09 10:15:41] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-09 10:15:41] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-09 10:15:41] 
[2026-03-09 10:15:41] 2026-03-09 09:14:52,641 | INFO     | **************************************
[2026-03-09 10:15:41] 2026-03-09 09:14:53,145 | INFO     | executing command: df -mP /var/lib/boinc/var/slot80/slots/1
[2026-03-09 10:15:41] 2026-03-09 09:14:53,162 | INFO     | sufficient remaining disk space (26265780224 B)
[2026-03-09 10:15:41] 2026-03-09 09:14:53,162 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-09 10:15:41] 2026-03-09 09:14:53,162 | INFO     | current server update state: UPDATING_FINAL
[2026-03-09 10:15:41] 2026-03-09 09:14:53,163 | INFO     | update_server=False
[2026-03-09 10:15:41] 2026-03-09 09:14:53,163 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-09 10:15:41] 2026-03-09 09:14:53,163 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-09 10:15:41] 2026-03-09 09:14:53,163 | INFO     | will abort loop
[2026-03-09 10:15:41] 2026-03-09 09:14:53,414 | INFO     | all data control threads have been joined
[2026-03-09 10:15:41] 2026-03-09 09:14:53,496 | INFO     | all payload control threads have been joined
[2026-03-09 10:15:41] 2026-03-09 09:14:53,679 | INFO     | job.realtimelogging is not enabled
[2026-03-09 10:15:41] 2026-03-09 09:14:53,900 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-09 10:15:41] 2026-03-09 09:14:54,018 | INFO     | all job control threads have been joined
[2026-03-09 10:15:41] 2026-03-09 09:14:54,168 | INFO     | [job] retrieve thread has finished
[2026-03-09 10:15:41] 2026-03-09 09:14:54,168 | INFO     | [job] job monitor thread has finished
[2026-03-09 10:15:41] 2026-03-09 09:14:54,219 | INFO     | [payload] failed_post thread has finished
[2026-03-09 10:15:41] 2026-03-09 09:14:54,235 | INFO     | [payload] execute_payloads thread has finished
[2026-03-09 10:15:41] 2026-03-09 09:14:54,419 | INFO     | [data] control thread has finished
[2026-03-09 10:15:41] 2026-03-09 09:14:54,501 | INFO     | [payload] control thread has finished
[2026-03-09 10:15:41] 2026-03-09 09:14:54,684 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-09 10:15:41] 2026-03-09 09:14:54,798 | INFO     | [payload] validate_post thread has finished
[2026-03-09 10:15:41] 2026-03-09 09:14:54,837 | INFO     | [job] validate thread has finished
[2026-03-09 10:15:41] 2026-03-09 09:14:55,023 | INFO     | [job] control thread has finished
[2026-03-09 10:15:41] 2026-03-09 09:14:55,219 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-09 10:15:41] 2026-03-09 09:14:55,277 | INFO     | [data] copytool_in thread has finished
[2026-03-09 10:15:41] 2026-03-09 09:14:55,282 | INFO     | [payload] validate_pre thread has finished
[2026-03-09 10:15:41] 2026-03-09 09:14:55,282 | INFO     | [job] create_data_payload thread has finished
[2026-03-09 10:15:41] 2026-03-09 09:14:55,905 | INFO     | [data] copytool_out thread has finished
[2026-03-09 10:15:41] 2026-03-09 09:14:56,071 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-09 10:15:41] 2026-03-09 09:14:56,224 | INFO     | [job] queue monitor thread has finished
[2026-03-09 10:15:41] 2026-03-09 09:15:00,076 | INFO     | [data] queue_monitor thread has finished
[2026-03-09 10:15:41] 2026-03-09 09:15:22,434 | INFO     | PID=1982732 has CPU usage=8.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-03-09 10:15:41] 2026-03-09 09:15:22,434 | INFO     | .. there are 52 such processes running
[2026-03-09 10:15:41] 2026-03-09 09:15:22,435 | INFO     | found 0 job(s) in 20 queues
[2026-03-09 10:15:41] 2026-03-09 09:15:22,435 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-09 10:15:41] 2026-03-09 09:15:22,435 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-09 10:15:41] 2026-03-09 09:15:35,126 | INFO     | [monitor] cgroup control has ended
[2026-03-09 10:15:41] 2026-03-09 09:15:35,683 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23343396636480)>', '<ExcThread(monitor, started 23343156963072)>']
[2026-03-09 10:15:41] 2026-03-09 09:15:36,507 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-09 10:15:41] 2026-03-09 09:15:36,507 | INFO     | [monitor] control thread has ended
[2026-03-09 10:15:41] 2026-03-09 09:15:40,708 | INFO     | all workflow threads have been joined
[2026-03-09 10:15:41] 2026-03-09 09:15:40,708 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-09 10:15:41] 2026-03-09 09:15:40,708 | INFO     | traces error code: 0
[2026-03-09 10:15:41] 2026-03-09 09:15:40,708 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-09 10:15:41] 2026-03-09 09:15:40,851 [wrapper] ==== pilot stdout END ====
[2026-03-09 10:15:41] 2026-03-09 09:15:40,855 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-09 10:15:41] 2026-03-09 09:15:40,857 [wrapper] pilotpid: 1982732
[2026-03-09 10:15:41] 2026-03-09 09:15:40,859 [wrapper] Pilot exit status: 0
[2026-03-09 10:15:41] 2026-03-09 09:15:40,867 [wrapper] pandaids: 7045813840
[2026-03-09 10:15:41] 2026-03-09 09:15:40,997 [wrapper] cleanup supervisor_pilot 3083401 1982733
[2026-03-09 10:15:41] 2026-03-09 09:15:41,000 [wrapper] Test setup, not cleaning
[2026-03-09 10:15:41] 2026-03-09 09:15:41,002 [wrapper] apfmon messages muted
[2026-03-09 10:15:41] 2026-03-09 09:15:41,005 [wrapper] ==== wrapper stdout END ====
[2026-03-09 10:15:41] 2026-03-09 09:15:41,009 [wrapper] ==== wrapper stderr END ====
[2026-03-09 10:15:41]  *** Error codes and diagnostics ***
[2026-03-09 10:15:41]     "exeErrorCode": 0,
[2026-03-09 10:15:41]     "exeErrorDiag": "",
[2026-03-09 10:15:41]     "pilotErrorCode": 0,
[2026-03-09 10:15:41]     "pilotErrorDiag": "",
[2026-03-09 10:15:41]  *** Listing of results directory ***
[2026-03-09 10:15:41] total 557008
[2026-03-09 10:15:41] -rw-r--r--. 1 boinc boinc    584627 Mar  8 04:14 pilot3.tar.gz
[2026-03-09 10:15:41] -rw-r--r--. 1 boinc boinc      5111 Mar  8 04:15 queuedata.json
[2026-03-09 10:15:41] -rwx------. 1 boinc boinc     36322 Mar  8 04:15 runpilot2-wrapper.sh
[2026-03-09 10:15:41] -rw-r--r--. 1 boinc boinc       100 Mar  9 08:25 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-09 10:15:41] -rwxr-xr-x. 1 boinc boinc      7986 Mar  9 08:25 run_atlas
[2026-03-09 10:15:41] -rw-r--r--. 1 boinc boinc       105 Mar  9 08:25 job.xml
[2026-03-09 10:15:41] -rw-r--r--. 2 boinc boinc 322161462 Mar  9 08:25 EVNT.48997945._000041.pool.root.1
[2026-03-09 10:15:41] -rw-r--r--. 2 boinc boinc     15845 Mar  9 08:25 start_atlas.sh
[2026-03-09 10:15:41] drwxrwx--x. 2 boinc boinc      4096 Mar  9 08:25 shared
[2026-03-09 10:15:41] -rw-r--r--. 2 boinc boinc    597949 Mar  9 08:25 input.tar.gz
[2026-03-09 10:15:41] -rw-r--r--. 1 boinc boinc      6707 Mar  9 08:25 init_data.xml
[2026-03-09 10:15:41] -rw-r--r--. 1 boinc boinc         0 Mar  9 08:25 boinc_lockfile
[2026-03-09 10:15:41] -rw-r--r--. 1 boinc boinc      2571 Mar  9 08:25 pandaJob.out
[2026-03-09 10:15:41] -rw-------. 1 boinc boinc    987092 Mar  9 08:25 agis_schedconf.cvmfs.json
[2026-03-09 10:15:41] -rw-------. 1 boinc boinc   1511578 Mar  9 08:25 agis_ddmendpoints.agis.ALL.json
[2026-03-09 10:15:41] -rw-------. 1 boinc boinc       444 Mar  9 08:25 workernode_map.json
[2026-03-09 10:15:41] drwx------. 5 boinc boinc      4096 Mar  9 08:25 pilot3
[2026-03-09 10:15:41] -rw-------. 1 boinc boinc 241793253 Mar  9 10:14 HITS.48997948._001025.pool.root.1
[2026-03-09 10:15:41] -rw-r--r--. 1 boinc boinc       529 Mar  9 10:14 boinc_task_state.xml
[2026-03-09 10:15:41] -rw-------. 1 boinc boinc        95 Mar  9 10:14 pilot_heartbeat.json
[2026-03-09 10:15:41] -rw-------. 1 boinc boinc      1031 Mar  9 10:14 memory_monitor_summary.json
[2026-03-09 10:15:41] -rw-------. 1 boinc boinc    308442 Mar  9 10:14 log.48997948._001025.job.log.tgz.1
[2026-03-09 10:15:41] -rw-------. 1 boinc boinc      6351 Mar  9 10:14 heartbeat.json
[2026-03-09 10:15:41] -rw-r--r--. 1 boinc boinc      8192 Mar  9 10:15 boinc_mmap_file
[2026-03-09 10:15:41] -rw-r--r--. 1 boinc boinc        27 Mar  9 10:15 wrapper_checkpoint.txt
[2026-03-09 10:15:41] -rw-------. 1 boinc boinc      4903 Mar  9 10:15 pilotlog.txt
[2026-03-09 10:15:41] -rw-------. 1 boinc boinc    943257 Mar  9 10:15 log.48997948._001025.job.log.1
[2026-03-09 10:15:41] -rw-------. 1 boinc boinc       357 Mar  9 10:15 output.list
[2026-03-09 10:15:41] -rw-r--r--. 1 boinc boinc       620 Mar  9 10:15 runtime_log
[2026-03-09 10:15:41] -rw-------. 1 boinc boinc   1269760 Mar  9 10:15 result.tar.gz
[2026-03-09 10:15:41] -rw-r--r--. 1 boinc boinc      9204 Mar  9 10:15 runtime_log.err
[2026-03-09 10:15:41] -rw-------. 1 boinc boinc       663 Mar  9 10:15 m54LDmcnJJ9nsSi4ap6QjLDmwznN0nGgGQJmIVkRDmkzXLDmy8Lmym.diag
[2026-03-09 10:15:41] -rw-r--r--. 1 boinc boinc     20825 Mar  9 10:15 stderr.txt
[2026-03-09 10:15:41] HITS file was successfully produced:
[2026-03-09 10:15:41] -rw-------. 1 boinc boinc 241793253 Mar  9 10:14 shared/HITS.pool.root.1
[2026-03-09 10:15:41]  *** Contents of shared directory: ***
[2026-03-09 10:15:41] total 552588
[2026-03-09 10:15:41] -rw-r--r--. 2 boinc boinc 322161462 Mar  9 08:25 ATLAS.root_0
[2026-03-09 10:15:41] -rw-r--r--. 2 boinc boinc     15845 Mar  9 08:25 start_atlas.sh
[2026-03-09 10:15:41] -rw-r--r--. 2 boinc boinc    597949 Mar  9 08:25 input.tar.gz
[2026-03-09 10:15:41] -rw-------. 1 boinc boinc 241793253 Mar  9 10:14 HITS.pool.root.1
[2026-03-09 10:15:41] -rw-------. 1 boinc boinc   1269760 Mar  9 10:15 result.tar.gz
10:15:42 (1978184): run_atlas exited; CPU time 25338.055742
10:15:42 (1978184): called boinc_finish(0)

</stderr_txt>
]]>

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