Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
22:56:55 (1358885): wrapper (7.7.26015): starting
22:56:55 (1358885): wrapper: running run_atlas (--nthreads 4)
[2026-03-09 22:56:55] Arguments: --nthreads 4
[2026-03-09 22:56:55] Threads: 4
[2026-03-09 22:56:55] Checking for CVMFS
[2026-03-09 22:56:55] No cvmfs_config command found, will try listing directly
[2026-03-09 22:56:55] CVMFS is ok
[2026-03-09 22:56:55] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-09 22:56:55] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-09 22:56:55] Further information can be found at the LHC@home message board.
[2026-03-09 22:56:55] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-09 22:56:55] Checking for apptainer binary...
[2026-03-09 22:56:55] which: no apptainer in ((null))
[2026-03-09 22:56:55] apptainer is not installed, using version from CVMFS
[2026-03-09 22:56:55] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-09 22:56:56] WARNING: Environment variable TMPDIR already has value [/var/lib/boinc/var/slot12/slots/5/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut06.grid.cesnet.cz
[2026-03-09 22:56:56] apptainer works
[2026-03-09 22:56:56] Set ATHENA_PROC_NUMBER=4
[2026-03-09 22:56:56] Set ATHENA_CORE_NUMBER=4
[2026-03-09 22:56:56] Starting ATLAS job with PandaID=7045791318
[2026-03-09 22:56:56] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc/var/slot12/slots/5 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-10 03:54:26]  *** The last 200 lines of the pilot log: ***
[2026-03-10 03:54:26] 2026-03-10 02:53:26,981 | INFO     | preparing for final server update for job 7045791318 in state='finished'
[2026-03-10 03:54:26] 2026-03-10 02:53:26,982 | INFO     | reading metadata from: /var/lib/boinc/var/slot12/slots/5/PanDA_Pilot-7045791318/jobReport.json
[2026-03-10 03:54:26] 2026-03-10 02:53:26,984 | INFO     | added worker_node to metadata from /var/lib/boinc/var/slot12/slots/5/workernode_map.json
[2026-03-10 03:54:26] 2026-03-10 02:53:26,984 | INFO     | this job has now completed (state=finished)
[2026-03-10 03:54:26] 2026-03-10 02:53:26,984 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-03-10 03:54:26] 2026-03-10 02:53:26,985 | INFO     | log transfer has been attempted: DONE
[2026-03-10 03:54:26] 2026-03-10 02:53:26,985 | INFO     | job 7045791318 has finished - writing final server update
[2026-03-10 03:54:26] 2026-03-10 02:53:26,985 | WARNING  | failed to read HTCondor job classAd: [Errno 2] No such file or directory: '/scratch/condor/execute/dir_1325146/.job.ad'
[2026-03-10 03:54:26] 2026-03-10 02:53:26,985 | INFO     | total number of processed events: 400 (read)
[2026-03-10 03:54:26] 2026-03-10 02:53:26,997 | INFO     | using path: /var/lib/boinc/var/slot12/slots/5/PanDA_Pilot-7045791318/memory_monitor_summary.json (trf name=prmon)
[2026-03-10 03:54:26] 2026-03-10 02:53:26,998 | INFO     | extracted standard info from prmon json
[2026-03-10 03:54:26] 2026-03-10 02:53:26,998 | INFO     | extracted standard memory fields from prmon json
[2026-03-10 03:54:26] 2026-03-10 02:53:26,998 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-03-10 03:54:26] 2026-03-10 02:53:26,998 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-03-10 03:54:26] 2026-03-10 02:53:26,998 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-03-10 03:54:26] 2026-03-10 02:53:27,003 | INFO     | fitting pss+swap vs Time
[2026-03-10 03:54:26] 2026-03-10 02:53:27,003 | INFO     | sum of square deviations: 7484568240.0
[2026-03-10 03:54:26] 2026-03-10 02:53:27,023 | INFO     | sum of deviations: 70525862784.99998
[2026-03-10 03:54:26] 2026-03-10 02:53:27,023 | INFO     | mean x: 1773102397.0
[2026-03-10 03:54:26] 2026-03-10 02:53:27,023 | INFO     | mean y: 2307775.356401384
[2026-03-10 03:54:26] 2026-03-10 02:53:27,023 | INFO     | intersect: -16705346206.107807
[2026-03-10 03:54:26] 2026-03-10 02:53:27,024 | INFO     | chi2: 3.7836525189346775
[2026-03-10 03:54:26] 2026-03-10 02:53:27,025 | INFO     | sum of square deviations: 7102775035.0
[2026-03-10 03:54:26] 2026-03-10 02:53:27,027 | INFO     | sum of deviations: 87246457922.0
[2026-03-10 03:54:26] 2026-03-10 02:53:27,027 | INFO     | mean x: 1773102244.5
[2026-03-10 03:54:26] 2026-03-10 02:53:27,028 | INFO     | mean y: 2314352.352112676
[2026-03-10 03:54:26] 2026-03-10 02:53:27,028 | INFO     | intersect: -21777467437.70609
[2026-03-10 03:54:26] 2026-03-10 02:53:27,028 | INFO     | chi2: 3.0078910409018835
[2026-03-10 03:54:26] 2026-03-10 02:53:27,028 | INFO     | current chi2=3.0078910409018835 (change=20.50297891126685 %)
[2026-03-10 03:54:26] 2026-03-10 02:53:27,029 | INFO     | right removable region: 283
[2026-03-10 03:54:26] 2026-03-10 02:53:27,029 | INFO     | sum of square deviations: 7102775035.0
[2026-03-10 03:54:26] 2026-03-10 02:53:27,031 | INFO     | sum of deviations: -1254810717.500002
[2026-03-10 03:54:26] 2026-03-10 02:53:27,032 | INFO     | mean x: 1773102549.5
[2026-03-10 03:54:26] 2026-03-10 02:53:27,032 | INFO     | mean y: 2336345.5035211267
[2026-03-10 03:54:26] 2026-03-10 02:53:27,032 | INFO     | intersect: 315581249.27361184
[2026-03-10 03:54:26] 2026-03-10 02:53:27,032 | INFO     | chi2: 0.8582528586217225
[2026-03-10 03:54:26] 2026-03-10 02:53:27,033 | INFO     | current chi2=0.8582528586217225 (change=77.31681611018098 %)
[2026-03-10 03:54:26] 2026-03-10 02:53:27,033 | INFO     | sum of square deviations: 6734191380.0
[2026-03-10 03:54:26] 2026-03-10 02:53:27,035 | INFO     | sum of deviations: -8934489318.0
[2026-03-10 03:54:26] 2026-03-10 02:53:27,035 | INFO     | mean x: 1773102702.0
[2026-03-10 03:54:26] 2026-03-10 02:53:27,036 | INFO     | mean y: 2339495.035842294
[2026-03-10 03:54:26] 2026-03-10 02:53:27,036 | INFO     | intersect: 2354777413.237083
[2026-03-10 03:54:26] 2026-03-10 02:53:27,036 | INFO     | chi2: 0.8076211604364547
[2026-03-10 03:54:26] 2026-03-10 02:53:27,036 | INFO     | current chi2=0.8076211604364547 (change=5.8993917324758804 %)
[2026-03-10 03:54:26] 2026-03-10 02:53:27,036 | INFO     | left removable region: 20
[2026-03-10 03:54:26] 2026-03-10 02:53:27,037 | INFO     | sum of square deviations: 5640782972.0
[2026-03-10 03:54:26] 2026-03-10 02:53:27,039 | INFO     | sum of deviations: 8286605024.000002
[2026-03-10 03:54:26] 2026-03-10 02:53:27,039 | INFO     | mean x: 1773102824.0
[2026-03-10 03:54:26] 2026-03-10 02:53:27,039 | INFO     | mean y: 2346973.950570342
[2026-03-10 03:54:26] 2026-03-10 02:53:27,040 | INFO     | intersect: -2602433752.8316603
[2026-03-10 03:54:26] 2026-03-10 02:53:27,040 | INFO     | chi2: 0.0009880277986607973
[2026-03-10 03:54:26] 2026-03-10 02:53:27,040 | INFO     | current memory leak: 1.47 B/s (using 263 data points, chi2=0.00)
[2026-03-10 03:54:26] 2026-03-10 02:53:27,041 | INFO     | could have reported an average CPU frequency of 2434 MHz (13 samples)
[2026-03-10 03:54:26] 2026-03-10 02:53:27,041 | INFO     | ..............................
[2026-03-10 03:54:26] 2026-03-10 02:53:27,041 | INFO     | . Timing measurements:
[2026-03-10 03:54:26] 2026-03-10 02:53:27,041 | INFO     | . get job = 0 s
[2026-03-10 03:54:26] 2026-03-10 02:53:27,041 | INFO     | . initial setup = 37 s
[2026-03-10 03:54:26] 2026-03-10 02:53:27,041 | INFO     | . payload setup = 47 s
[2026-03-10 03:54:26] 2026-03-10 02:53:27,042 | INFO     | . stage-in = 0 s
[2026-03-10 03:54:26] 2026-03-10 02:53:27,042 | INFO     | . payload execution = 17619 s
[2026-03-10 03:54:26] 2026-03-10 02:53:27,042 | INFO     | . stage-out = 1 s
[2026-03-10 03:54:26] 2026-03-10 02:53:27,042 | INFO     | . log creation = 0 s
[2026-03-10 03:54:26] 2026-03-10 02:53:27,042 | INFO     | ..............................
[2026-03-10 03:54:26] 2026-03-10 02:53:27,133 | INFO     | 
[2026-03-10 03:54:26] 2026-03-10 02:53:27,133 | INFO     | job summary report
[2026-03-10 03:54:26] 2026-03-10 02:53:27,133 | INFO     | --------------------------------------------------
[2026-03-10 03:54:26] 2026-03-10 02:53:27,133 | INFO     | PanDA job id: 7045791318
[2026-03-10 03:54:26] 2026-03-10 02:53:27,133 | INFO     | task id: 48997948
[2026-03-10 03:54:26] 2026-03-10 02:53:27,134 | INFO     | errors: (none)
[2026-03-10 03:54:26] 2026-03-10 02:53:27,134 | INFO     | status: LOG_TRANSFER = DONE 
[2026-03-10 03:54:26] 2026-03-10 02:53:27,134 | INFO     | pilot state: finished 
[2026-03-10 03:54:26] 2026-03-10 02:53:27,134 | INFO     | transexitcode: 0
[2026-03-10 03:54:26] 2026-03-10 02:53:27,134 | INFO     | exeerrorcode: 0
[2026-03-10 03:54:26] 2026-03-10 02:53:27,134 | INFO     | exeerrordiag: 
[2026-03-10 03:54:26] 2026-03-10 02:53:27,134 | INFO     | exitcode: 0
[2026-03-10 03:54:26] 2026-03-10 02:53:27,134 | INFO     | exitmsg: OK
[2026-03-10 03:54:26] 2026-03-10 02:53:27,134 | INFO     | cpuconsumptiontime: 56442 s
[2026-03-10 03:54:26] 2026-03-10 02:53:27,134 | INFO     | nevents: 400
[2026-03-10 03:54:26] 2026-03-10 02:53:27,134 | INFO     | neventsw: 0
[2026-03-10 03:54:26] 2026-03-10 02:53:27,134 | INFO     | pid: 1368603
[2026-03-10 03:54:26] 2026-03-10 02:53:27,134 | INFO     | pgrp: 1368603
[2026-03-10 03:54:26] 2026-03-10 02:53:27,134 | INFO     | corecount: 4
[2026-03-10 03:54:26] 2026-03-10 02:53:27,134 | INFO     | event service: False
[2026-03-10 03:54:26] 2026-03-10 02:53:27,135 | INFO     | sizes: {0: 2279821, 1: 2280282, 17671: 2312793, 17672: 2312792, 17673: 2321868, 17675: 2322246}
[2026-03-10 03:54:26] 2026-03-10 02:53:27,135 | INFO     | --------------------------------------------------
[2026-03-10 03:54:26] 2026-03-10 02:53:27,135 | INFO     | 
[2026-03-10 03:54:26] 2026-03-10 02:53:27,135 | INFO     | executing command: ls -lF /var/lib/boinc/var/slot12/slots/5
[2026-03-10 03:54:26] 2026-03-10 02:53:27,154 | INFO     | queue jobs had 0 job(s) [purged]
[2026-03-10 03:54:26] 2026-03-10 02:53:27,154 | INFO     | queue payloads had 0 job(s) [purged]
[2026-03-10 03:54:26] 2026-03-10 02:53:27,154 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-10 03:54:26] 2026-03-10 02:53:27,154 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-10 03:54:26] 2026-03-10 02:53:27,154 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-10 03:54:26] 2026-03-10 02:53:27,154 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-10 03:54:26] 2026-03-10 02:53:27,154 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-10 03:54:26] 2026-03-10 02:53:27,154 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-10 03:54:26] 2026-03-10 02:53:27,154 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-10 03:54:26] 2026-03-10 02:53:27,154 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-10 03:54:26] 2026-03-10 02:53:27,154 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-10 03:54:26] 2026-03-10 02:53:27,154 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-10 03:54:26] 2026-03-10 02:53:27,154 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-10 03:54:26] 2026-03-10 02:53:27,154 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-10 03:54:26] 2026-03-10 02:53:27,154 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-10 03:54:26] 2026-03-10 02:53:27,154 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-10 03:54:26] 2026-03-10 02:53:27,155 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-10 03:54:26] 2026-03-10 02:53:27,155 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-10 03:54:26] 2026-03-10 02:53:27,155 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-10 03:54:26] 2026-03-10 02:53:27,155 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-10 03:54:26] 2026-03-10 02:53:27,155 | INFO     | job 7045791318 has completed (purged errors)
[2026-03-10 03:54:26] 2026-03-10 02:53:27,155 | INFO     | overall cleanup function is called
[2026-03-10 03:54:26] 2026-03-10 02:53:28,161 | INFO     | --- collectZombieJob: --- 10, [1368603]
[2026-03-10 03:54:26] 2026-03-10 02:53:28,161 | INFO     | zombie collector waiting for pid 1368603
[2026-03-10 03:54:26] 2026-03-10 02:53:28,161 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-10 03:54:26] 2026-03-10 02:53:28,161 | INFO     | collected zombie processes
[2026-03-10 03:54:26] 2026-03-10 02:53:28,161 | INFO     | will attempt to kill all subprocesses of pid=1368603
[2026-03-10 03:54:26] 2026-03-10 02:53:28,495 | INFO     | process IDs to be killed: [1368603] (in reverse order)
[2026-03-10 03:54:26] 2026-03-10 02:53:28,623 | WARNING  | found no corresponding commands to process id(s)
[2026-03-10 03:54:26] 2026-03-10 02:53:28,623 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-10 03:54:26] 2026-03-10 02:53:28,635 | INFO     | did not find any defunct processes belonging to 1368603
[2026-03-10 03:54:26] 2026-03-10 02:53:28,645 | INFO     | did not find any defunct processes belonging to 1368603
[2026-03-10 03:54:26] 2026-03-10 02:53:28,645 | INFO     | ready for new job
[2026-03-10 03:54:26] 2026-03-10 02:53:28,646 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-10 03:54:26] 2026-03-10 02:53:28,649 | INFO     | **************************************
[2026-03-10 03:54:26] 2026-03-10 02:53:28,649 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-03-10 03:54:26] 2026-03-10 02:53:28,649 | INFO     | **************************************
[2026-03-10 03:54:26] 2026-03-10 02:53:28,649 | INFO     | 
[2026-03-10 03:54:26] 2026-03-10 02:53:28,653 | INFO     | architecture information:
[2026-03-10 03:54:26] 2026-03-10 02:53:28,654 | INFO     | executing command: cat /etc/os-release
[2026-03-10 03:54:26] 2026-03-10 02:53:28,670 | INFO     | cat /etc/os-release:
[2026-03-10 03:54:26] NAME="CentOS Linux"
[2026-03-10 03:54:26] VERSION="7 (Core)"
[2026-03-10 03:54:26] ID="centos"
[2026-03-10 03:54:26] ID_LIKE="rhel fedora"
[2026-03-10 03:54:26] VERSION_ID="7"
[2026-03-10 03:54:26] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-10 03:54:26] ANSI_COLOR="0;31"
[2026-03-10 03:54:26] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-10 03:54:26] HOME_URL="https://www.centos.org/"
[2026-03-10 03:54:26] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-10 03:54:26] 
[2026-03-10 03:54:26] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-10 03:54:26] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-10 03:54:26] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-10 03:54:26] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-10 03:54:26] 
[2026-03-10 03:54:26] 2026-03-10 02:53:28,670 | INFO     | **************************************
[2026-03-10 03:54:26] 2026-03-10 02:53:29,175 | INFO     | executing command: df -mP /var/lib/boinc/var/slot12/slots/5
[2026-03-10 03:54:26] 2026-03-10 02:53:29,192 | INFO     | sufficient remaining disk space (20517486592 B)
[2026-03-10 03:54:26] 2026-03-10 02:53:29,192 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-10 03:54:26] 2026-03-10 02:53:29,192 | INFO     | current server update state: UPDATING_FINAL
[2026-03-10 03:54:26] 2026-03-10 02:53:29,192 | INFO     | update_server=False
[2026-03-10 03:54:26] 2026-03-10 02:53:29,192 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-10 03:54:26] 2026-03-10 02:53:29,193 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-10 03:54:26] 2026-03-10 02:53:29,682 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-03-10 03:54:26] 2026-03-10 02:53:29,682 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-03-10 03:54:26] 2026-03-10 02:53:29,682 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-10 03:54:26] 2026-03-10 02:53:29,683 | INFO     | will abort loop
[2026-03-10 03:54:26] 2026-03-10 02:53:29,706 | INFO     | all job control threads have been joined
[2026-03-10 03:54:26] 2026-03-10 02:53:29,796 | INFO     | all payload control threads have been joined
[2026-03-10 03:54:26] 2026-03-10 02:53:29,956 | INFO     | all data control threads have been joined
[2026-03-10 03:54:26] 2026-03-10 02:53:30,193 | INFO     | [job] retrieve thread has finished
[2026-03-10 03:54:26] 2026-03-10 02:53:30,431 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-10 03:54:26] 2026-03-10 02:53:30,586 | INFO     | [job] validate thread has finished
[2026-03-10 03:54:26] 2026-03-10 02:53:30,615 | INFO     | [payload] execute_payloads thread has finished
[2026-03-10 03:54:26] 2026-03-10 02:53:30,636 | INFO     | [payload] failed_post thread has finished
[2026-03-10 03:54:26] 2026-03-10 02:53:30,687 | INFO     | [job] job monitor thread has finished
[2026-03-10 03:54:26] 2026-03-10 02:53:30,711 | INFO     | [job] control thread has finished
[2026-03-10 03:54:26] 2026-03-10 02:53:30,798 | INFO     | [payload] control thread has finished
[2026-03-10 03:54:26] 2026-03-10 02:53:30,832 | INFO     | [payload] validate_pre thread has finished
[2026-03-10 03:54:26] 2026-03-10 02:53:30,962 | INFO     | [data] control thread has finished
[2026-03-10 03:54:26] 2026-03-10 02:53:31,140 | INFO     | [payload] validate_post thread has finished
[2026-03-10 03:54:26] 2026-03-10 02:53:31,347 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-10 03:54:26] 2026-03-10 02:53:31,369 | INFO     | [job] create_data_payload thread has finished
[2026-03-10 03:54:26] 2026-03-10 02:53:31,613 | INFO     | [data] copytool_in thread has finished
[2026-03-10 03:54:26] 2026-03-10 02:53:32,145 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-10 03:54:26] 2026-03-10 02:53:32,437 | INFO     | [data] copytool_out thread has finished
[2026-03-10 03:54:26] 2026-03-10 02:53:33,150 | INFO     | [job] queue monitor thread has finished
[2026-03-10 03:54:26] 2026-03-10 02:53:33,199 | INFO     | [data] queue_monitor thread has finished
[2026-03-10 03:54:26] 2026-03-10 02:53:59,049 | INFO     | PID=1363222 has CPU usage=5.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-03-10 03:54:26] 2026-03-10 02:53:59,050 | INFO     | .. there are 15 such processes running
[2026-03-10 03:54:26] 2026-03-10 02:53:59,050 | INFO     | found 0 job(s) in 20 queues
[2026-03-10 03:54:26] 2026-03-10 02:53:59,050 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-10 03:54:26] 2026-03-10 02:53:59,050 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-10 03:54:26] 2026-03-10 02:54:20,088 | INFO     | [monitor] cgroup control has ended
[2026-03-10 03:54:26] 2026-03-10 02:54:21,334 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23063389861696)>', '<ExcThread(monitor, started 23063153624832)>']
[2026-03-10 03:54:26] 2026-03-10 02:54:22,158 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-10 03:54:26] 2026-03-10 02:54:22,158 | INFO     | [monitor] control thread has ended
[2026-03-10 03:54:26] 2026-03-10 02:54:26,356 | INFO     | all workflow threads have been joined
[2026-03-10 03:54:26] 2026-03-10 02:54:26,356 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-10 03:54:26] 2026-03-10 02:54:26,356 | INFO     | traces error code: 0
[2026-03-10 03:54:26] 2026-03-10 02:54:26,357 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-10 03:54:26] 2026-03-10 02:54:26,482 [wrapper] ==== pilot stdout END ====
[2026-03-10 03:54:26] 2026-03-10 02:54:26,485 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-10 03:54:26] 2026-03-10 02:54:26,487 [wrapper] pilotpid: 1363222
[2026-03-10 03:54:26] 2026-03-10 02:54:26,490 [wrapper] Pilot exit status: 0
[2026-03-10 03:54:26] 2026-03-10 02:54:26,500 [wrapper] pandaids: 7045791318
[2026-03-10 03:54:26] 2026-03-10 02:54:26,567 [wrapper] cleanup supervisor_pilot 1711286 1363223
[2026-03-10 03:54:26] 2026-03-10 02:54:26,570 [wrapper] Test setup, not cleaning
[2026-03-10 03:54:26] 2026-03-10 02:54:26,573 [wrapper] apfmon messages muted
[2026-03-10 03:54:26] 2026-03-10 02:54:26,576 [wrapper] ==== wrapper stdout END ====
[2026-03-10 03:54:26] 2026-03-10 02:54:26,578 [wrapper] ==== wrapper stderr END ====
[2026-03-10 03:54:26]  *** Error codes and diagnostics ***
[2026-03-10 03:54:26]     "exeErrorCode": 0,
[2026-03-10 03:54:26]     "exeErrorDiag": "",
[2026-03-10 03:54:26]     "pilotErrorCode": 0,
[2026-03-10 03:54:26]     "pilotErrorDiag": "",
[2026-03-10 03:54:26]  *** Listing of results directory ***
[2026-03-10 03:54:26] total 562892
[2026-03-10 03:54:26] -rw-r--r--. 1 boinc boinc    584627 Mar  8 04:14 pilot3.tar.gz
[2026-03-10 03:54:26] -rw-r--r--. 1 boinc boinc      5111 Mar  8 04:15 queuedata.json
[2026-03-10 03:54:26] -rwx------. 1 boinc boinc     36322 Mar  8 04:15 runpilot2-wrapper.sh
[2026-03-10 03:54:26] -rw-r--r--. 1 boinc boinc       100 Mar  9 22:55 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-10 03:54:26] -rwxr-xr-x. 1 boinc boinc      7986 Mar  9 22:55 run_atlas
[2026-03-10 03:54:26] -rw-r--r--. 1 boinc boinc       105 Mar  9 22:55 job.xml
[2026-03-10 03:54:26] -rw-r--r--. 2 boinc boinc 324194069 Mar  9 22:56 EVNT.48997945._000036.pool.root.1
[2026-03-10 03:54:26] -rw-r--r--. 1 boinc boinc      6560 Mar  9 22:56 init_data.xml
[2026-03-10 03:54:26] -rw-r--r--. 2 boinc boinc     15845 Mar  9 22:56 start_atlas.sh
[2026-03-10 03:54:26] drwxrwx--x. 2 boinc boinc      4096 Mar  9 22:56 shared
[2026-03-10 03:54:26] -rw-r--r--. 2 boinc boinc    597952 Mar  9 22:56 input.tar.gz
[2026-03-10 03:54:26] -rw-r--r--. 1 boinc boinc         0 Mar  9 22:56 boinc_lockfile
[2026-03-10 03:54:26] -rw-r--r--. 1 boinc boinc      2569 Mar  9 22:56 pandaJob.out
[2026-03-10 03:54:26] -rw-------. 1 boinc boinc   1002738 Mar  9 22:58 agis_schedconf.cvmfs.json
[2026-03-10 03:54:26] -rw-------. 1 boinc boinc       446 Mar  9 22:58 workernode_map.json
[2026-03-10 03:54:26] drwx------. 5 boinc boinc      4096 Mar  9 22:58 pilot3
[2026-03-10 03:54:26] -rw-------. 1 boinc boinc 242458496 Mar 10 03:52 HITS.48997948._000879.pool.root.1
[2026-03-10 03:54:26] -rw-r--r--. 1 boinc boinc       531 Mar 10 03:53 boinc_task_state.xml
[2026-03-10 03:54:26] -rw-------. 1 boinc boinc        95 Mar 10 03:53 pilot_heartbeat.json
[2026-03-10 03:54:26] -rw-------. 1 boinc boinc      1034 Mar 10 03:53 memory_monitor_summary.json
[2026-03-10 03:54:26] -rw-------. 1 boinc boinc   1511578 Mar 10 03:53 agis_ddmendpoints.agis.ALL.json
[2026-03-10 03:54:26] -rw-------. 1 boinc boinc    440802 Mar 10 03:53 log.48997948._000879.job.log.tgz.1
[2026-03-10 03:54:26] -rw-------. 1 boinc boinc      6393 Mar 10 03:53 heartbeat.json
[2026-03-10 03:54:26] -rw-r--r--. 1 boinc boinc      8192 Mar 10 03:54 boinc_mmap_file
[2026-03-10 03:54:26] -rw-r--r--. 1 boinc boinc        28 Mar 10 03:54 wrapper_checkpoint.txt
[2026-03-10 03:54:26] -rw-------. 1 boinc boinc      5015 Mar 10 03:54 pilotlog.txt
[2026-03-10 03:54:26] -rw-------. 1 boinc boinc   2468343 Mar 10 03:54 log.48997948._000879.job.log.1
[2026-03-10 03:54:26] -rw-------. 1 boinc boinc       357 Mar 10 03:54 output.list
[2026-03-10 03:54:26] -rw-r--r--. 1 boinc boinc       620 Mar 10 03:54 runtime_log
[2026-03-10 03:54:26] -rw-------. 1 boinc boinc   2928640 Mar 10 03:54 result.tar.gz
[2026-03-10 03:54:26] -rw-r--r--. 1 boinc boinc      9205 Mar 10 03:54 runtime_log.err
[2026-03-10 03:54:26] -rw-------. 1 boinc boinc       665 Mar 10 03:54 j4yMDmVnJJ9n9Rq4apOajLDm4fhM0noT9bVooX4SDmrXVLDmV7EMEm.diag
[2026-03-10 03:54:26] -rw-r--r--. 1 boinc boinc     21135 Mar 10 03:54 stderr.txt
[2026-03-10 03:54:26] HITS file was successfully produced:
[2026-03-10 03:54:26] -rw-------. 1 boinc boinc 242458496 Mar 10 03:52 shared/HITS.pool.root.1
[2026-03-10 03:54:26]  *** Contents of shared directory: ***
[2026-03-10 03:54:26] total 556840
[2026-03-10 03:54:26] -rw-r--r--. 2 boinc boinc 324194069 Mar  9 22:56 ATLAS.root_0
[2026-03-10 03:54:26] -rw-r--r--. 2 boinc boinc     15845 Mar  9 22:56 start_atlas.sh
[2026-03-10 03:54:26] -rw-r--r--. 2 boinc boinc    597952 Mar  9 22:56 input.tar.gz
[2026-03-10 03:54:26] -rw-------. 1 boinc boinc 242458496 Mar 10 03:52 HITS.pool.root.1
[2026-03-10 03:54:26] -rw-------. 1 boinc boinc   2928640 Mar 10 03:54 result.tar.gz
03:54:27 (1358885): run_atlas exited; CPU time 57121.872233
03:54:27 (1358885): called boinc_finish(0)

</stderr_txt>
]]>

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