Stderr output

<core_client_version>8.3.0</core_client_version>
<![CDATA[
<stderr_txt>
22:18:36 (2935935): wrapper (7.7.26015): starting
22:18:36 (2935935): wrapper: running run_atlas (--nthreads 4)
[2026-03-07 22:18:36] Arguments: --nthreads 4
[2026-03-07 22:18:36] Threads: 4
[2026-03-07 22:18:36] Checking for CVMFS
[2026-03-07 22:18:36] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-07 22:18:37] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-07 22:18:37] Running cvmfs_config stat atlas.cern.ch
[2026-03-07 22:18:38] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-07 22:18:38] 2.13.3.0 9162 7985 51124 157025 2 9 3956120 4096000 2748 130560 2 6885106 99.991 279396 84 http://s1bnl-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
[2026-03-07 22:18:38] CVMFS is ok
[2026-03-07 22:18:38] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-07 22:18:38] Small home clusters do not require a local http proxy but it is suggested if
[2026-03-07 22:18:38] more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
[2026-03-07 22:18:38] Further information can be found at the LHC@home message board.
[2026-03-07 22:18:38] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-07 22:18:38] Checking for apptainer binary...
[2026-03-07 22:18:38] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-07 22:18:38] Running /usr/bin/apptainer --version
[2026-03-07 22:18:38] apptainer version 1.4.5
[2026-03-07 22:18:38] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-07 22:18:38] SETI64-Ubuntu
[2026-03-07 22:18:38] apptainer works
[2026-03-07 22:18:38] Set ATHENA_PROC_NUMBER=4
[2026-03-07 22:18:38] Set ATHENA_CORE_NUMBER=4
[2026-03-07 22:18:38] Starting ATLAS job with PandaID=7039300520
[2026-03-07 22:18:38] Running command: /usr/bin/apptainer exec -B /cvmfs,/home/whitlerd/Desktop/BOINC/slots/87 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-08 00:40:18]  *** The last 200 lines of the pilot log: ***
[2026-03-08 00:40:18] 2026-03-08 05:39:38,752 | INFO     | added worker_node to metadata from /home/whitlerd/Desktop/BOINC/slots/87/workernode_map.json
[2026-03-08 00:40:18] 2026-03-08 05:39:38,752 | INFO     | this job has now completed (state=finished)
[2026-03-08 00:40:18] 2026-03-08 05:39:38,752 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-03-08 00:40:18] 2026-03-08 05:39:38,752 | INFO     | log transfer has been attempted: DONE
[2026-03-08 00:40:18] 2026-03-08 05:39:38,752 | INFO     | job 7039300520 has finished - writing final server update
[2026-03-08 00:40:18] 2026-03-08 05:39:38,753 | INFO     | total number of processed events: 400 (read)
[2026-03-08 00:40:18] 2026-03-08 05:39:38,762 | INFO     | monitor loop #606: job 0:7039300520 is in state 'finished'
[2026-03-08 00:40:18] 2026-03-08 05:39:38,763 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-03-08 00:40:18] 2026-03-08 05:39:38,778 | INFO     | using path: /home/whitlerd/Desktop/BOINC/slots/87/PanDA_Pilot-7039300520/memory_monitor_summary.json (trf name=prmon)
[2026-03-08 00:40:18] 2026-03-08 05:39:38,779 | INFO     | extracted standard info from prmon json
[2026-03-08 00:40:18] 2026-03-08 05:39:38,779 | INFO     | extracted standard memory fields from prmon json
[2026-03-08 00:40:18] 2026-03-08 05:39:38,779 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-03-08 00:40:18] 2026-03-08 05:39:38,779 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-03-08 00:40:18] 2026-03-08 05:39:38,779 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-03-08 00:40:18] 2026-03-08 05:39:38,782 | INFO     | fitting pss+swap vs Time
[2026-03-08 00:40:18] 2026-03-08 05:39:38,782 | INFO     | sum of square deviations: 814878534.5
[2026-03-08 00:40:18] 2026-03-08 05:39:38,783 | INFO     | sum of deviations: -29135336334.500004
[2026-03-08 00:40:18] 2026-03-08 05:39:38,783 | INFO     | mean x: 1772944142.5
[2026-03-08 00:40:18] 2026-03-08 05:39:38,783 | INFO     | mean y: 2418934.586956522
[2026-03-08 00:40:18] 2026-03-08 05:39:38,783 | INFO     | intersect: 63392631962.73392
[2026-03-08 00:40:18] 2026-03-08 05:39:38,783 | INFO     | chi2: 1.532593316809775
[2026-03-08 00:40:18] 2026-03-08 05:39:38,784 | INFO     | sum of square deviations: 729472282.0
[2026-03-08 00:40:18] 2026-03-08 05:39:38,784 | INFO     | sum of deviations: -27027611295.0
[2026-03-08 00:40:18] 2026-03-08 05:39:38,784 | INFO     | mean x: 1772943990.0
[2026-03-08 00:40:18] 2026-03-08 05:39:38,785 | INFO     | mean y: 2422699.789473684
[2026-03-08 00:40:18] 2026-03-08 05:39:38,785 | INFO     | intersect: 65691609515.97391
[2026-03-08 00:40:18] 2026-03-08 05:39:38,785 | INFO     | chi2: 1.5263999272380429
[2026-03-08 00:40:18] 2026-03-08 05:39:38,785 | INFO     | current chi2=1.5263999272380429 (change=0.4041117433961003 %)
[2026-03-08 00:40:18] 2026-03-08 05:39:38,785 | INFO     | right removable region: 132
[2026-03-08 00:40:18] 2026-03-08 05:39:38,785 | INFO     | sum of square deviations: 729472282.0
[2026-03-08 00:40:18] 2026-03-08 05:39:38,786 | INFO     | sum of deviations: -45556515198.0
[2026-03-08 00:40:18] 2026-03-08 05:39:38,786 | INFO     | mean x: 1772944295.0
[2026-03-08 00:40:18] 2026-03-08 05:39:38,786 | INFO     | mean y: 2447597.984962406
[2026-03-08 00:40:18] 2026-03-08 05:39:38,786 | INFO     | intersect: 110725179240.27496
[2026-03-08 00:40:18] 2026-03-08 05:39:38,787 | INFO     | chi2: 0.14124231653093505
[2026-03-08 00:40:18] 2026-03-08 05:39:38,787 | INFO     | current chi2=0.14124231653093505 (change=90.78409679973399 %)
[2026-03-08 00:40:18] 2026-03-08 05:39:38,787 | INFO     | sum of square deviations: 650252192.0
[2026-03-08 00:40:18] 2026-03-08 05:39:38,788 | INFO     | sum of deviations: -40557254433.5
[2026-03-08 00:40:18] 2026-03-08 05:39:38,788 | INFO     | mean x: 1772944447.5
[2026-03-08 00:40:18] 2026-03-08 05:39:38,788 | INFO     | mean y: 2437961.0859375
[2026-03-08 00:40:18] 2026-03-08 05:39:38,788 | INFO     | intersect: 110583778460.00206
[2026-03-08 00:40:18] 2026-03-08 05:39:38,788 | INFO     | chi2: 0.14101500004005058
[2026-03-08 00:40:18] 2026-03-08 05:39:38,788 | INFO     | current chi2=0.14101500004005058 (change=0.16094078351843658 %)
[2026-03-08 00:40:18] 2026-03-08 05:39:38,788 | INFO     | left removable region: 20
[2026-03-08 00:40:18] 2026-03-08 05:39:38,789 | INFO     | sum of square deviations: 435610028.0
[2026-03-08 00:40:18] 2026-03-08 05:39:38,789 | INFO     | sum of deviations: -27407398606.5
[2026-03-08 00:40:18] 2026-03-08 05:39:38,789 | INFO     | mean x: 1772944569.5
[2026-03-08 00:40:18] 2026-03-08 05:39:38,789 | INFO     | mean y: 2418953.9553571427
[2026-03-08 00:40:18] 2026-03-08 05:39:38,789 | INFO     | intersect: 111551270909.02568
[2026-03-08 00:40:18] 2026-03-08 05:39:38,790 | INFO     | chi2: 0.1188325862154538
[2026-03-08 00:40:18] 2026-03-08 05:39:38,790 | INFO     | current memory leak: -62.92 B/s (using 112 data points, chi2=0.12)
[2026-03-08 00:40:18] 2026-03-08 05:39:38,790 | INFO     | could have reported an average CPU frequency of 2466 MHz (8 samples)
[2026-03-08 00:40:18] 2026-03-08 05:39:38,790 | INFO     | ..............................
[2026-03-08 00:40:18] 2026-03-08 05:39:38,790 | INFO     | . Timing measurements:
[2026-03-08 00:40:18] 2026-03-08 05:39:38,791 | INFO     | . get job = 0 s
[2026-03-08 00:40:18] 2026-03-08 05:39:38,791 | INFO     | . initial setup = 8 s
[2026-03-08 00:40:18] 2026-03-08 05:39:38,791 | INFO     | . payload setup = 7 s
[2026-03-08 00:40:18] 2026-03-08 05:39:38,791 | INFO     | . stage-in = 0 s
[2026-03-08 00:40:18] 2026-03-08 05:39:38,791 | INFO     | . payload execution = 8413 s
[2026-03-08 00:40:18] 2026-03-08 05:39:38,791 | INFO     | . stage-out = 0 s
[2026-03-08 00:40:18] 2026-03-08 05:39:38,791 | INFO     | . log creation = 0 s
[2026-03-08 00:40:18] 2026-03-08 05:39:38,791 | INFO     | ..............................
[2026-03-08 00:40:18] 2026-03-08 05:39:38,884 | INFO     | 
[2026-03-08 00:40:18] 2026-03-08 05:39:38,884 | INFO     | job summary report
[2026-03-08 00:40:18] 2026-03-08 05:39:38,884 | INFO     | --------------------------------------------------
[2026-03-08 00:40:18] 2026-03-08 05:39:38,884 | INFO     | PanDA job id: 7039300520
[2026-03-08 00:40:18] 2026-03-08 05:39:38,884 | INFO     | task id: 48955006
[2026-03-08 00:40:18] 2026-03-08 05:39:38,884 | INFO     | errors: (none)
[2026-03-08 00:40:18] 2026-03-08 05:39:38,884 | INFO     | status: LOG_TRANSFER = DONE 
[2026-03-08 00:40:18] 2026-03-08 05:39:38,885 | INFO     | pilot state: finished 
[2026-03-08 00:40:18] 2026-03-08 05:39:38,885 | INFO     | transexitcode: 0
[2026-03-08 00:40:18] 2026-03-08 05:39:38,885 | INFO     | exeerrorcode: 0
[2026-03-08 00:40:18] 2026-03-08 05:39:38,885 | INFO     | exeerrordiag: 
[2026-03-08 00:40:18] 2026-03-08 05:39:38,885 | INFO     | exitcode: 0
[2026-03-08 00:40:18] 2026-03-08 05:39:38,885 | INFO     | exitmsg: OK
[2026-03-08 00:40:18] 2026-03-08 05:39:38,885 | INFO     | cpuconsumptiontime: 32559 s
[2026-03-08 00:40:18] 2026-03-08 05:39:38,885 | INFO     | nevents: 400
[2026-03-08 00:40:18] 2026-03-08 05:39:38,885 | INFO     | neventsw: 0
[2026-03-08 00:40:18] 2026-03-08 05:39:38,885 | INFO     | pid: 2945500
[2026-03-08 00:40:18] 2026-03-08 05:39:38,885 | INFO     | pgrp: 2945500
[2026-03-08 00:40:18] 2026-03-08 05:39:38,885 | INFO     | corecount: 4
[2026-03-08 00:40:18] 2026-03-08 05:39:38,886 | INFO     | event service: False
[2026-03-08 00:40:18] 2026-03-08 05:39:38,886 | INFO     | sizes: {0: 2295820, 11: 2295820, 8424: 2323720, 8425: 2332804, 8427: 2332942}
[2026-03-08 00:40:18] 2026-03-08 05:39:38,886 | INFO     | --------------------------------------------------
[2026-03-08 00:40:18] 2026-03-08 05:39:38,886 | INFO     | 
[2026-03-08 00:40:18] 2026-03-08 05:39:38,886 | INFO     | executing command: ls -lF /home/whitlerd/Desktop/BOINC/slots/87
[2026-03-08 00:40:18] 2026-03-08 05:39:38,916 | INFO     | queue jobs had 0 job(s) [purged]
[2026-03-08 00:40:18] 2026-03-08 05:39:38,916 | INFO     | queue payloads had 0 job(s) [purged]
[2026-03-08 00:40:18] 2026-03-08 05:39:38,916 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-08 00:40:18] 2026-03-08 05:39:38,916 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-08 00:40:18] 2026-03-08 05:39:38,916 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-08 00:40:18] 2026-03-08 05:39:38,916 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-08 00:40:18] 2026-03-08 05:39:38,916 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-08 00:40:18] 2026-03-08 05:39:38,916 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-08 00:40:18] 2026-03-08 05:39:38,916 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-08 00:40:18] 2026-03-08 05:39:38,916 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-08 00:40:18] 2026-03-08 05:39:38,917 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-08 00:40:18] 2026-03-08 05:39:38,917 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-08 00:40:18] 2026-03-08 05:39:38,917 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-08 00:40:18] 2026-03-08 05:39:38,917 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-08 00:40:18] 2026-03-08 05:39:38,917 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-08 00:40:18] 2026-03-08 05:39:38,917 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-08 00:40:18] 2026-03-08 05:39:38,917 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-08 00:40:18] 2026-03-08 05:39:38,917 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-08 00:40:18] 2026-03-08 05:39:38,917 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-08 00:40:18] 2026-03-08 05:39:38,917 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-08 00:40:18] 2026-03-08 05:39:38,918 | INFO     | job 7039300520 has completed (purged errors)
[2026-03-08 00:40:18] 2026-03-08 05:39:38,918 | INFO     | overall cleanup function is called
[2026-03-08 00:40:18] 2026-03-08 05:39:39,927 | INFO     | --- collectZombieJob: --- 10, [2945500]
[2026-03-08 00:40:18] 2026-03-08 05:39:39,927 | INFO     | zombie collector waiting for pid 2945500
[2026-03-08 00:40:18] 2026-03-08 05:39:39,927 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-08 00:40:18] 2026-03-08 05:39:39,927 | INFO     | collected zombie processes
[2026-03-08 00:40:18] 2026-03-08 05:39:39,927 | INFO     | will attempt to kill all subprocesses of pid=2945500
[2026-03-08 00:40:18] 2026-03-08 05:39:40,426 | INFO     | process IDs to be killed: [2945500] (in reverse order)
[2026-03-08 00:40:18] 2026-03-08 05:39:40,583 | WARNING  | found no corresponding commands to process id(s)
[2026-03-08 00:40:18] 2026-03-08 05:39:40,584 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-08 00:40:18] 2026-03-08 05:39:40,599 | INFO     | did not find any defunct processes belonging to 2945500
[2026-03-08 00:40:18] 2026-03-08 05:39:40,614 | INFO     | did not find any defunct processes belonging to 2945500
[2026-03-08 00:40:18] 2026-03-08 05:39:40,615 | INFO     | ready for new job
[2026-03-08 00:40:18] 2026-03-08 05:39:40,615 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-08 00:40:18] 2026-03-08 05:39:40,617 | INFO     | **************************************
[2026-03-08 00:40:18] 2026-03-08 05:39:40,617 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-03-08 00:40:18] 2026-03-08 05:39:40,617 | INFO     | **************************************
[2026-03-08 00:40:18] 2026-03-08 05:39:40,617 | INFO     | 
[2026-03-08 00:40:18] 2026-03-08 05:39:40,626 | INFO     | architecture information:
[2026-03-08 00:40:18] 2026-03-08 05:39:40,626 | INFO     | executing command: cat /etc/os-release
[2026-03-08 00:40:18] 2026-03-08 05:39:40,648 | INFO     | cat /etc/os-release:
[2026-03-08 00:40:18] NAME="CentOS Linux"
[2026-03-08 00:40:18] VERSION="7 (Core)"
[2026-03-08 00:40:18] ID="centos"
[2026-03-08 00:40:18] ID_LIKE="rhel fedora"
[2026-03-08 00:40:18] VERSION_ID="7"
[2026-03-08 00:40:18] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-08 00:40:18] ANSI_COLOR="0;31"
[2026-03-08 00:40:18] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-08 00:40:18] HOME_URL="https://www.centos.org/"
[2026-03-08 00:40:18] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-08 00:40:18] 
[2026-03-08 00:40:18] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-08 00:40:18] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-08 00:40:18] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-08 00:40:18] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-08 00:40:18] 
[2026-03-08 00:40:18] 2026-03-08 05:39:40,648 | INFO     | **************************************
[2026-03-08 00:40:18] 2026-03-08 05:39:41,151 | INFO     | executing command: df -mP /home/whitlerd/Desktop/BOINC/slots/87
[2026-03-08 00:40:18] 2026-03-08 05:39:41,172 | INFO     | sufficient remaining disk space (378690076672 B)
[2026-03-08 00:40:18] 2026-03-08 05:39:41,173 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-08 00:40:18] 2026-03-08 05:39:41,173 | INFO     | current server update state: UPDATING_FINAL
[2026-03-08 00:40:18] 2026-03-08 05:39:41,173 | INFO     | update_server=False
[2026-03-08 00:40:18] 2026-03-08 05:39:41,173 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-08 00:40:18] 2026-03-08 05:39:41,266 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-03-08 00:40:18] 2026-03-08 05:39:41,266 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-03-08 00:40:18] 2026-03-08 05:39:41,266 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-08 00:40:18] 2026-03-08 05:39:41,266 | INFO     | will abort loop
[2026-03-08 00:40:18] 2026-03-08 05:39:41,456 | INFO     | all job control threads have been joined
[2026-03-08 00:40:18] 2026-03-08 05:39:41,786 | INFO     | all data control threads have been joined
[2026-03-08 00:40:18] 2026-03-08 05:39:41,880 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-08 00:40:18] 2026-03-08 05:39:41,942 | INFO     | all payload control threads have been joined
[2026-03-08 00:40:18] 2026-03-08 05:39:42,178 | INFO     | [job] retrieve thread has finished
[2026-03-08 00:40:18] 2026-03-08 05:39:42,219 | INFO     | [data] copytool_in thread has finished
[2026-03-08 00:40:18] 2026-03-08 05:39:42,272 | INFO     | [job] job monitor thread has finished
[2026-03-08 00:40:18] 2026-03-08 05:39:42,461 | INFO     | [job] control thread has finished
[2026-03-08 00:40:18] 2026-03-08 05:39:42,629 | INFO     | [payload] validate_post thread has finished
[2026-03-08 00:40:18] 2026-03-08 05:39:42,792 | INFO     | [data] control thread has finished
[2026-03-08 00:40:18] 2026-03-08 05:39:42,942 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-08 00:40:18] 2026-03-08 05:39:42,947 | INFO     | [payload] control thread has finished
[2026-03-08 00:40:18] 2026-03-08 05:39:43,031 | INFO     | [job] validate thread has finished
[2026-03-08 00:40:18] 2026-03-08 05:39:43,141 | INFO     | [job] create_data_payload thread has finished
[2026-03-08 00:40:18] 2026-03-08 05:39:43,324 | INFO     | [payload] failed_post thread has finished
[2026-03-08 00:40:18] 2026-03-08 05:39:43,334 | INFO     | [payload] validate_pre thread has finished
[2026-03-08 00:40:18] 2026-03-08 05:39:43,637 | INFO     | [payload] execute_payloads thread has finished
[2026-03-08 00:40:18] 2026-03-08 05:39:43,887 | INFO     | [data] copytool_out thread has finished
[2026-03-08 00:40:18] 2026-03-08 05:39:43,894 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-08 00:40:18] 2026-03-08 05:39:44,899 | INFO     | [job] queue monitor thread has finished
[2026-03-08 00:40:18] 2026-03-08 05:39:46,947 | INFO     | [data] queue_monitor thread has finished
[2026-03-08 00:40:18] 2026-03-08 05:39:52,047 | INFO     | job.realtimelogging is not enabled
[2026-03-08 00:40:18] 2026-03-08 05:39:53,052 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-08 00:40:18] 2026-03-08 05:40:12,153 | INFO     | [monitor] cgroup control has ended
[2026-03-08 00:40:18] 2026-03-08 05:40:12,339 | INFO     | PID=2940492 has CPU usage=6.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-03-08 00:40:18] 2026-03-08 05:40:12,339 | INFO     | .. there are 4 such processes running
[2026-03-08 00:40:18] 2026-03-08 05:40:12,340 | INFO     | found 0 job(s) in 20 queues
[2026-03-08 00:40:18] 2026-03-08 05:40:12,340 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-08 00:40:18] 2026-03-08 05:40:12,340 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-08 00:40:18] 2026-03-08 05:40:12,719 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139355322292032)>', '<ExcThread(monitor, started 139354827642624)>']
[2026-03-08 00:40:18] 2026-03-08 05:40:13,341 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-08 00:40:18] 2026-03-08 05:40:13,342 | INFO     | [monitor] control thread has ended
[2026-03-08 00:40:18] 2026-03-08 05:40:17,744 | INFO     | all workflow threads have been joined
[2026-03-08 00:40:18] 2026-03-08 05:40:17,744 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-08 00:40:18] 2026-03-08 05:40:17,744 | INFO     | traces error code: 0
[2026-03-08 00:40:18] 2026-03-08 05:40:17,744 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-08 00:40:18] 2026-03-08 05:40:17,898 [wrapper] ==== pilot stdout END ====
[2026-03-08 00:40:18] 2026-03-08 05:40:17,904 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-08 00:40:18] 2026-03-08 05:40:17,907 [wrapper] pilotpid: 2940492
[2026-03-08 00:40:18] 2026-03-08 05:40:17,910 [wrapper] Pilot exit status: 0
[2026-03-08 00:40:18] 2026-03-08 05:40:17,924 [wrapper] pandaids: 7039300520
[2026-03-08 00:40:18] 2026-03-08 05:40:18,032 [wrapper] cleanup supervisor_pilot 3001897 2940493
[2026-03-08 00:40:18] 2026-03-08 05:40:18,035 [wrapper] Test setup, not cleaning
[2026-03-08 00:40:18] 2026-03-08 05:40:18,038 [wrapper] apfmon messages muted
[2026-03-08 00:40:18] 2026-03-08 05:40:18,041 [wrapper] ==== wrapper stdout END ====
[2026-03-08 00:40:18] 2026-03-08 05:40:18,044 [wrapper] ==== wrapper stderr END ====
[2026-03-08 00:40:18]  *** Error codes and diagnostics ***
[2026-03-08 00:40:18]     "exeErrorCode": 0,
[2026-03-08 00:40:18]     "exeErrorDiag": "",
[2026-03-08 00:40:18]     "pilotErrorCode": 0,
[2026-03-08 00:40:18]     "pilotErrorDiag": "",
[2026-03-08 00:40:18]  *** Listing of results directory ***
[2026-03-08 00:40:18] total 609324
[2026-03-08 00:40:18] -rw-r--r-- 1 whitlerd whitlerd      5111 Mar  7 17:32 queuedata.json
[2026-03-08 00:40:18] -rw-r--r-- 1 whitlerd whitlerd    584627 Mar  7 17:32 pilot3.tar.gz
[2026-03-08 00:40:18] -rwx------ 1 whitlerd whitlerd     36322 Mar  7 17:32 runpilot2-wrapper.sh
[2026-03-08 00:40:18] -rw-rw-r-- 1 whitlerd whitlerd       100 Mar  7 22:18 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-08 00:40:18] -rwxr-xr-x 1 whitlerd whitlerd      7986 Mar  7 22:18 run_atlas
[2026-03-08 00:40:18] -rw-rw-r-- 1 whitlerd whitlerd       105 Mar  7 22:18 job.xml
[2026-03-08 00:40:18] -rw-r--r-- 2 whitlerd whitlerd 435979722 Mar  7 22:18 EVNT.46701403._000422.pool.root.1
[2026-03-08 00:40:18] -rw-r--r-- 2 whitlerd whitlerd     15845 Mar  7 22:18 start_atlas.sh
[2026-03-08 00:40:18] drwxrwx--x 2 whitlerd whitlerd      4096 Mar  7 22:18 shared
[2026-03-08 00:40:18] -rw-r--r-- 2 whitlerd whitlerd    597954 Mar  7 22:18 input.tar.gz
[2026-03-08 00:40:18] -rw-rw-r-- 1 whitlerd whitlerd      9566 Mar  7 22:18 init_data.xml
[2026-03-08 00:40:18] -rw-rw-r-- 1 whitlerd whitlerd         0 Mar  7 22:18 boinc_setup_complete
[2026-03-08 00:40:18] -rw-rw-r-- 1 whitlerd whitlerd         0 Mar  7 22:18 boinc_lockfile
[2026-03-08 00:40:18] -rw-rw-r-- 1 whitlerd whitlerd      2564 Mar  7 22:18 pandaJob.out
[2026-03-08 00:40:18] -rw------- 1 whitlerd whitlerd    999177 Mar  7 22:18 agis_schedconf.cvmfs.json
[2026-03-08 00:40:18] -rw------- 1 whitlerd whitlerd   1521291 Mar  7 22:18 agis_ddmendpoints.agis.ALL.json
[2026-03-08 00:40:18] -rw------- 1 whitlerd whitlerd       421 Mar  7 22:18 workernode_map.json
[2026-03-08 00:40:18] drwx------ 5 whitlerd whitlerd      4096 Mar  7 22:18 pilot3
[2026-03-08 00:40:18] -rw------- 1 whitlerd whitlerd 180951648 Mar  8 00:39 HITS.48955006._021081.pool.root.1
[2026-03-08 00:40:18] -rw-rw-r-- 1 whitlerd whitlerd       530 Mar  8 00:39 boinc_task_state.xml
[2026-03-08 00:40:18] -rw------- 1 whitlerd whitlerd      1022 Mar  8 00:39 memory_monitor_summary.json
[2026-03-08 00:40:18] -rw------- 1 whitlerd whitlerd    340072 Mar  8 00:39 log.48955006._021081.job.log.tgz.1
[2026-03-08 00:40:18] -rw------- 1 whitlerd whitlerd      6295 Mar  8 00:39 heartbeat.json
[2026-03-08 00:40:18] -rw------- 1 whitlerd whitlerd        95 Mar  8 00:40 pilot_heartbeat.json
[2026-03-08 00:40:18] -rw-rw-r-- 1 whitlerd whitlerd        27 Mar  8 00:40 wrapper_checkpoint.txt
[2026-03-08 00:40:18] -rw-rw-r-- 1 whitlerd whitlerd      8192 Mar  8 00:40 boinc_mmap_file
[2026-03-08 00:40:18] -rw------- 1 whitlerd whitlerd      5093 Mar  8 00:40 pilotlog.txt
[2026-03-08 00:40:18] -rw------- 1 whitlerd whitlerd   1195966 Mar  8 00:40 log.48955006._021081.job.log.1
[2026-03-08 00:40:18] -rw------- 1 whitlerd whitlerd       357 Mar  8 00:40 output.list
[2026-03-08 00:40:18] -rw-rw-r-- 1 whitlerd whitlerd       620 Mar  8 00:40 runtime_log
[2026-03-08 00:40:18] -rw------- 1 whitlerd whitlerd   1556480 Mar  8 00:40 result.tar.gz
[2026-03-08 00:40:18] -rw-rw-r-- 1 whitlerd whitlerd      9040 Mar  8 00:40 runtime_log.err
[2026-03-08 00:40:18] -rw------- 1 whitlerd whitlerd       648 Mar  8 00:40 oRHMDm9MFJ9n9Rq4apOajLDm4fhM0noT9bVooX4SDm3wULDm06SXJm.diag
[2026-03-08 00:40:18] -rw-rw-r-- 1 whitlerd whitlerd     21313 Mar  8 00:40 stderr.txt
[2026-03-08 00:40:18] HITS file was successfully produced:
[2026-03-08 00:40:18] -rw------- 1 whitlerd whitlerd 180951648 Mar  8 00:39 shared/HITS.pool.root.1
[2026-03-08 00:40:18]  *** Contents of shared directory: ***
[2026-03-08 00:40:18] total 604604
[2026-03-08 00:40:18] -rw-r--r-- 2 whitlerd whitlerd 435979722 Mar  7 22:18 ATLAS.root_0
[2026-03-08 00:40:18] -rw-r--r-- 2 whitlerd whitlerd     15845 Mar  7 22:18 start_atlas.sh
[2026-03-08 00:40:18] -rw-r--r-- 2 whitlerd whitlerd    597954 Mar  7 22:18 input.tar.gz
[2026-03-08 00:40:18] -rw------- 1 whitlerd whitlerd 180951648 Mar  8 00:39 HITS.pool.root.1
[2026-03-08 00:40:18] -rw------- 1 whitlerd whitlerd   1556480 Mar  8 00:40 result.tar.gz
00:40:19 (2935935): run_atlas exited; CPU time 32979.741029
00:40:19 (2935935): called boinc_finish(0)

</stderr_txt>
]]>

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