Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
10:52:12 (708690): wrapper (7.7.26015): starting
10:52:12 (708690): wrapper: running run_atlas (--nthreads 4)
[2026-03-08 10:52:12] Arguments: --nthreads 4
[2026-03-08 10:52:12] Threads: 4
[2026-03-08 10:52:12] Checking for CVMFS
[2026-03-08 10:52:12] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-08 10:52:13] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-08 10:52:13] Running cvmfs_config stat atlas.cern.ch
[2026-03-08 10:52:13] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-08 10:52:13] 2.9.2.0 3116 3247 100212 157034 1 188 34445438 36864001 0 130560 0 2006476 99.989 126238 8518 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-03-08 10:52:13] CVMFS is ok
[2026-03-08 10:52:13] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-08 10:52:13] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-08 10:52:13] Further information can be found at the LHC@home message board.
[2026-03-08 10:52:13] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-08 10:52:13] Checking for apptainer binary...
[2026-03-08 10:52:13] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-08 10:52:13] Running /usr/bin/apptainer --version
[2026-03-08 10:52:13] apptainer version 1.4.1-1.1
[2026-03-08 10:52:13] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-08 10:52:13] thA373a
[2026-03-08 10:52:13] apptainer works
[2026-03-08 10:52:13] Set ATHENA_PROC_NUMBER=4
[2026-03-08 10:52:13] Set ATHENA_CORE_NUMBER=4
[2026-03-08 10:52:13] Starting ATLAS job with PandaID=7039295898
[2026-03-08 10:52:13] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-08 12:00:35]  *** The last 200 lines of the pilot log: ***
[2026-03-08 12:00:35] 2026-03-08 11:00:08,642 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-08 12:00:35] 2026-03-08 11:00:08,642 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-08 12:00:35] 2026-03-08 11:00:08,642 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-08 12:00:35] 2026-03-08 11:00:08,642 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-08 12:00:35] 2026-03-08 11:00:08,643 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-08 12:00:35] 2026-03-08 11:00:08,643 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-08 12:00:35] 2026-03-08 11:00:08,643 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-08 12:00:35] 2026-03-08 11:00:08,643 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-08 12:00:35] 2026-03-08 11:00:08,643 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-08 12:00:35] 2026-03-08 11:00:08,643 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-08 12:00:35] 2026-03-08 11:00:08,643 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-08 12:00:35] 2026-03-08 11:00:08,643 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-08 12:00:35] 2026-03-08 11:00:08,643 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-08 12:00:35] 2026-03-08 11:00:08,643 | INFO     | job 7039295898 has completed (purged errors)
[2026-03-08 12:00:35] 2026-03-08 11:00:08,643 | INFO     | overall cleanup function is called
[2026-03-08 12:00:35] 2026-03-08 11:00:09,650 | INFO     | --- collectZombieJob: --- 10, [716976]
[2026-03-08 12:00:35] 2026-03-08 11:00:09,650 | INFO     | zombie collector waiting for pid 716976
[2026-03-08 12:00:35] 2026-03-08 11:00:09,650 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-08 12:00:35] 2026-03-08 11:00:09,650 | INFO     | collected zombie processes
[2026-03-08 12:00:35] 2026-03-08 11:00:09,650 | INFO     | will attempt to kill all subprocesses of pid=716976
[2026-03-08 12:00:35] 2026-03-08 11:00:09,691 | INFO     | process IDs to be killed: [716976] (in reverse order)
[2026-03-08 12:00:35] 2026-03-08 11:00:09,726 | WARNING  | found no corresponding commands to process id(s)
[2026-03-08 12:00:35] 2026-03-08 11:00:09,726 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-08 12:00:35] 2026-03-08 11:00:09,727 | INFO     | did not find any defunct processes belonging to 716976
[2026-03-08 12:00:35] 2026-03-08 11:00:09,728 | INFO     | did not find any defunct processes belonging to 716976
[2026-03-08 12:00:35] 2026-03-08 11:00:09,729 | INFO     | ready for new job
[2026-03-08 12:00:35] 2026-03-08 11:00:09,729 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-08 12:00:35] 2026-03-08 11:00:09,729 | INFO     | **************************************
[2026-03-08 12:00:35] 2026-03-08 11:00:09,729 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-03-08 12:00:35] 2026-03-08 11:00:09,729 | INFO     | **************************************
[2026-03-08 12:00:35] 2026-03-08 11:00:09,729 | INFO     | 
[2026-03-08 12:00:35] 2026-03-08 11:00:09,730 | INFO     | architecture information:
[2026-03-08 12:00:35] 2026-03-08 11:00:09,730 | INFO     | executing command: cat /etc/os-release
[2026-03-08 12:00:35] 2026-03-08 11:00:09,745 | INFO     | cat /etc/os-release:
[2026-03-08 12:00:35] NAME="CentOS Linux"
[2026-03-08 12:00:35] VERSION="7 (Core)"
[2026-03-08 12:00:35] ID="centos"
[2026-03-08 12:00:35] ID_LIKE="rhel fedora"
[2026-03-08 12:00:35] VERSION_ID="7"
[2026-03-08 12:00:35] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-08 12:00:35] ANSI_COLOR="0;31"
[2026-03-08 12:00:35] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-08 12:00:35] HOME_URL="https://www.centos.org/"
[2026-03-08 12:00:35] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-08 12:00:35] 
[2026-03-08 12:00:35] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-08 12:00:35] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-08 12:00:35] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-08 12:00:35] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-08 12:00:35] 
[2026-03-08 12:00:35] 2026-03-08 11:00:09,745 | INFO     | **************************************
[2026-03-08 12:00:35] 2026-03-08 11:00:10,248 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-03-08 12:00:35] 2026-03-08 11:00:10,266 | INFO     | sufficient remaining disk space (323234037760 B)
[2026-03-08 12:00:35] 2026-03-08 11:00:10,267 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-08 12:00:35] 2026-03-08 11:00:10,267 | INFO     | current server update state: UPDATING_FINAL
[2026-03-08 12:00:35] 2026-03-08 11:00:10,267 | INFO     | update_server=False
[2026-03-08 12:00:35] 2026-03-08 11:00:10,267 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-08 12:00:35] 2026-03-08 11:00:10,267 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-08 12:00:35] 2026-03-08 11:00:10,267 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2026-03-08 12:00:35] 2026-03-08 11:00:10,267 | INFO     | found 0 job(s) in 20 queues
[2026-03-08 12:00:35] 2026-03-08 11:00:10,267 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-08 12:00:35] 2026-03-08 11:00:10,267 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-08 12:00:35] 2026-03-08 11:00:10,267 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-08 12:00:35] 2026-03-08 11:00:10,267 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-08 12:00:35] 2026-03-08 11:00:10,268 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-08 12:00:35] 2026-03-08 11:00:10,268 | INFO     | aborting loop
[2026-03-08 12:00:35] 2026-03-08 11:00:10,500 | INFO     | all data control threads have been joined
[2026-03-08 12:00:35] 2026-03-08 11:00:10,722 | INFO     | all payload control threads have been joined
[2026-03-08 12:00:35] 2026-03-08 11:00:11,043 | INFO     | all job control threads have been joined
[2026-03-08 12:00:35] 2026-03-08 11:00:11,270 | INFO     | [job] queue monitor thread has finished
[2026-03-08 12:00:35] 2026-03-08 11:00:11,272 | INFO     | [job] retrieve thread has finished
[2026-03-08 12:00:35] 2026-03-08 11:00:11,273 | INFO     | [job] job monitor thread has finished
[2026-03-08 12:00:35] 2026-03-08 11:00:11,371 | INFO     | [payload] execute_payloads thread has finished
[2026-03-08 12:00:35] 2026-03-08 11:00:11,502 | INFO     | [data] control thread has finished
[2026-03-08 12:00:35] 2026-03-08 11:00:11,556 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-08 12:00:35] 2026-03-08 11:00:11,706 | INFO     | [payload] validate_post thread has finished
[2026-03-08 12:00:35] 2026-03-08 11:00:11,728 | INFO     | [payload] control thread has finished
[2026-03-08 12:00:35] 2026-03-08 11:00:12,049 | INFO     | [job] control thread has finished
[2026-03-08 12:00:35] 2026-03-08 11:00:12,138 | INFO     | [job] validate thread has finished
[2026-03-08 12:00:35] 2026-03-08 11:00:12,238 | INFO     | [job] create_data_payload thread has finished
[2026-03-08 12:00:35] 2026-03-08 11:00:12,273 | INFO     | [data] copytool_out thread has finished
[2026-03-08 12:00:35] 2026-03-08 11:00:12,336 | INFO     | [payload] validate_pre thread has finished
[2026-03-08 12:00:35] 2026-03-08 11:00:12,429 | INFO     | [data] copytool_in thread has finished
[2026-03-08 12:00:35] 2026-03-08 11:00:12,602 | INFO     | [payload] failed_post thread has finished
[2026-03-08 12:00:35] 2026-03-08 11:00:14,273 | INFO     | [data] queue_monitor thread has finished
[2026-03-08 12:00:35] 2026-03-08 11:00:29,383 | INFO     | [monitor] cgroup control has ended
[2026-03-08 12:00:35] 2026-03-08 11:00:30,597 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140612510242624)>', '<ExcThread(monitor, started 140611541767936)>']
[2026-03-08 12:00:35] 2026-03-08 11:00:31,373 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-08 12:00:35] 2026-03-08 11:00:31,374 | INFO     | [monitor] control thread has ended
[2026-03-08 12:00:35] 2026-03-08 11:00:35,623 | INFO     | all workflow threads have been joined
[2026-03-08 12:00:35] 2026-03-08 11:00:35,623 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-08 12:00:35] 2026-03-08 11:00:35,623 | INFO     | traces error code: 0
[2026-03-08 12:00:35] 2026-03-08 11:00:35,623 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-08 12:00:35] 2026-03-08 11:00:35,701 [wrapper] ==== pilot stdout END ====
[2026-03-08 12:00:35] 2026-03-08 11:00:35,705 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-08 12:00:35] 2026-03-08 11:00:35,709 [wrapper] pilotpid: 712483
[2026-03-08 12:00:35] 2026-03-08 11:00:35,713 [wrapper] Pilot exit status: 0
[2026-03-08 12:00:35] 2026-03-08 11:00:35,725 [wrapper] pandaids: 7039295898
[2026-03-08 12:00:35] 2026-03-08 11:00:35,747 [wrapper] cleanup supervisor_pilot  722193 712484
[2026-03-08 12:00:35] 2026-03-08 11:00:35,751 [wrapper] Test setup, not cleaning
[2026-03-08 12:00:35] 2026-03-08 11:00:35,754 [wrapper] apfmon messages muted
[2026-03-08 12:00:35] 2026-03-08 11:00:35,758 [wrapper] ==== wrapper stdout END ====
[2026-03-08 12:00:35] 2026-03-08 11:00:35,762 [wrapper] ==== wrapper stderr END ====
[2026-03-08 12:00:35]  *** Error codes and diagnostics ***
[2026-03-08 12:00:35]     "exeErrorCode": 0,
[2026-03-08 12:00:35]     "exeErrorDiag": "",
[2026-03-08 12:00:35]     "pilotErrorCode": 0,
[2026-03-08 12:00:35]     "pilotErrorDiag": "",
[2026-03-08 12:00:35]  *** Listing of results directory ***
[2026-03-08 12:00:35] total 614696
[2026-03-08 12:00:35] -rw-r--r-- 1 boinc boinc    584627 Mar  7 22:34 pilot3.tar.gz
[2026-03-08 12:00:35] -rwx------ 1 boinc boinc     36322 Mar  7 22:57 runpilot2-wrapper.sh
[2026-03-08 12:00:35] -rw-r--r-- 1 boinc boinc      5111 Mar  7 22:58 queuedata.json
[2026-03-08 12:00:35] -rw-r--r-- 1 boinc boinc       100 Mar  8 10:52 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-08 12:00:35] -rwxr-xr-x 1 boinc boinc      7986 Mar  8 10:52 run_atlas
[2026-03-08 12:00:35] -rw-r--r-- 1 boinc boinc       105 Mar  8 10:52 job.xml
[2026-03-08 12:00:35] -rw-r--r-- 2 boinc boinc 438655206 Mar  8 10:52 EVNT.46701403._000406.pool.root.1
[2026-03-08 12:00:35] -rw-r--r-- 2 boinc boinc    597959 Mar  8 10:52 input.tar.gz
[2026-03-08 12:00:35] -rw-r--r-- 2 boinc boinc     15845 Mar  8 10:52 start_atlas.sh
[2026-03-08 12:00:35] drwxrwx--x 2 boinc boinc      4096 Mar  8 10:52 shared
[2026-03-08 12:00:35] -rw-r--r-- 1 boinc boinc         0 Mar  8 10:52 boinc_setup_complete
[2026-03-08 12:00:35] -rw-r--r-- 1 boinc boinc      6377 Mar  8 10:52 init_data.xml
[2026-03-08 12:00:35] -rw-r--r-- 1 boinc boinc         0 Mar  8 10:52 boinc_lockfile
[2026-03-08 12:00:35] -rw-r--r-- 1 boinc boinc      2563 Mar  8 10:52 pandaJob.out
[2026-03-08 12:00:35] -rw------- 1 boinc boinc    999169 Mar  8 10:52 agis_schedconf.cvmfs.json
[2026-03-08 12:00:35] -rw------- 1 boinc boinc   1521291 Mar  8 10:52 agis_ddmendpoints.agis.ALL.json
[2026-03-08 12:00:35] -rw------- 1 boinc boinc       428 Mar  8 10:52 workernode_map.json
[2026-03-08 12:00:35] drwx------ 5 boinc boinc      4096 Mar  8 10:52 pilot3
[2026-03-08 12:00:35] -rw------- 1 boinc boinc        95 Mar  8 11:59 pilot_heartbeat.json
[2026-03-08 12:00:35] -rw------- 1 boinc boinc 185126210 Mar  8 11:59 HITS.48955006._020273.pool.root.1
[2026-03-08 12:00:35] -rw-r--r-- 1 boinc boinc       530 Mar  8 11:59 boinc_task_state.xml
[2026-03-08 12:00:35] -rw------- 1 boinc boinc      1022 Mar  8 12:00 memory_monitor_summary.json
[2026-03-08 12:00:35] -rw------- 1 boinc boinc    264257 Mar  8 12:00 log.48955006._020273.job.log.tgz.1
[2026-03-08 12:00:35] -rw------- 1 boinc boinc      6320 Mar  8 12:00 heartbeat.json
[2026-03-08 12:00:35] -rw-r--r-- 1 boinc boinc      8192 Mar  8 12:00 boinc_mmap_file
[2026-03-08 12:00:35] -rw-r--r-- 1 boinc boinc        27 Mar  8 12:00 wrapper_checkpoint.txt
[2026-03-08 12:00:35] -rw------- 1 boinc boinc      4552 Mar  8 12:00 pilotlog.txt
[2026-03-08 12:00:35] -rw------- 1 boinc boinc    604861 Mar  8 12:00 log.48955006._020273.job.log.1
[2026-03-08 12:00:35] -rw------- 1 boinc boinc       357 Mar  8 12:00 output.list
[2026-03-08 12:00:35] -rw-r--r-- 1 boinc boinc       620 Mar  8 12:00 runtime_log
[2026-03-08 12:00:35] -rw------- 1 boinc boinc    890880 Mar  8 12:00 result.tar.gz
[2026-03-08 12:00:35] -rw-r--r-- 1 boinc boinc      8901 Mar  8 12:00 runtime_log.err
[2026-03-08 12:00:35] -rw------- 1 boinc boinc       658 Mar  8 12:00 lZvNDmXpEJ9nsSi4ap6QjLDmwznN0nGgGQJmIVkRDmgJXLDm55BNrm.diag
[2026-03-08 12:00:35] -rw-r--r-- 1 boinc boinc     12049 Mar  8 12:00 stderr.txt
[2026-03-08 12:00:35] HITS file was successfully produced:
[2026-03-08 12:00:35] -rw------- 1 boinc boinc 185126210 Mar  8 11:59 shared/HITS.pool.root.1
[2026-03-08 12:00:35]  *** Contents of shared directory: ***
[2026-03-08 12:00:35] total 610644
[2026-03-08 12:00:35] -rw-r--r-- 2 boinc boinc 438655206 Mar  8 10:52 ATLAS.root_0
[2026-03-08 12:00:35] -rw-r--r-- 2 boinc boinc    597959 Mar  8 10:52 input.tar.gz
[2026-03-08 12:00:35] -rw-r--r-- 2 boinc boinc     15845 Mar  8 10:52 start_atlas.sh
[2026-03-08 12:00:35] -rw------- 1 boinc boinc 185126210 Mar  8 11:59 HITS.pool.root.1
[2026-03-08 12:00:35] -rw------- 1 boinc boinc    890880 Mar  8 12:00 result.tar.gz
12:00:58 (708690): run_atlas exited; CPU time 15146.914228
12:00:58 (708690): called boinc_finish(0)

</stderr_txt>
]]>

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