Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
21:28:29 (2569186): wrapper (7.7.26015): starting
21:28:29 (2569186): wrapper: running run_atlas (--nthreads 4)
[2026-03-08 21:28:29] Arguments: --nthreads 4
[2026-03-08 21:28:29] Threads: 4
[2026-03-08 21:28:29] Checking for CVMFS
[2026-03-08 21:28:29] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-08 21:28:30] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-08 21:28:30] Running cvmfs_config stat atlas.cern.ch
[2026-03-08 21:28:30] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-08 21:28:30] 2.9.2.0 3074 14583 101728 157052 1 50 28600889 36864001 0 130560 0 6485560 99.984 546264 13404 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-03-08 21:28:30] CVMFS is ok
[2026-03-08 21:28:30] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-08 21:28:30] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-08 21:28:30] Further information can be found at the LHC@home message board.
[2026-03-08 21:28:30] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-08 21:28:30] Checking for apptainer binary...
[2026-03-08 21:28:30] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-08 21:28:30] Running /usr/bin/apptainer --version
[2026-03-08 21:28:30] apptainer version 1.4.1-1.1
[2026-03-08 21:28:30] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-08 21:28:30] thA314
[2026-03-08 21:28:30] apptainer works
[2026-03-08 21:28:30] Set ATHENA_PROC_NUMBER=4
[2026-03-08 21:28:30] Set ATHENA_CORE_NUMBER=4
[2026-03-08 21:28:30] Starting ATLAS job with PandaID=7039297072
[2026-03-08 21:28:30] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-08 22:36:09]  *** The last 200 lines of the pilot log: ***
[2026-03-08 22:36:09] 2026-03-08 21:35:38,402 | INFO     | overall cleanup function is called
[2026-03-08 22:36:09] 2026-03-08 21:35:39,408 | INFO     | --- collectZombieJob: --- 10, [2577814]
[2026-03-08 22:36:09] 2026-03-08 21:35:39,409 | INFO     | zombie collector waiting for pid 2577814
[2026-03-08 22:36:09] 2026-03-08 21:35:39,409 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-08 22:36:09] 2026-03-08 21:35:39,409 | INFO     | collected zombie processes
[2026-03-08 22:36:09] 2026-03-08 21:35:39,409 | INFO     | will attempt to kill all subprocesses of pid=2577814
[2026-03-08 22:36:09] 2026-03-08 21:35:39,464 | INFO     | process IDs to be killed: [2577814] (in reverse order)
[2026-03-08 22:36:09] 2026-03-08 21:35:39,501 | WARNING  | found no corresponding commands to process id(s)
[2026-03-08 22:36:09] 2026-03-08 21:35:39,501 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-08 22:36:09] 2026-03-08 21:35:39,503 | INFO     | did not find any defunct processes belonging to 2577814
[2026-03-08 22:36:09] 2026-03-08 21:35:39,505 | INFO     | did not find any defunct processes belonging to 2577814
[2026-03-08 22:36:09] 2026-03-08 21:35:39,505 | INFO     | ready for new job
[2026-03-08 22:36:09] 2026-03-08 21:35:39,505 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-08 22:36:09] 2026-03-08 21:35:39,506 | INFO     | **************************************
[2026-03-08 22:36:09] 2026-03-08 21:35:39,506 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-03-08 22:36:09] 2026-03-08 21:35:39,506 | INFO     | **************************************
[2026-03-08 22:36:09] 2026-03-08 21:35:39,506 | INFO     | 
[2026-03-08 22:36:09] 2026-03-08 21:35:39,506 | INFO     | architecture information:
[2026-03-08 22:36:09] 2026-03-08 21:35:39,507 | INFO     | executing command: cat /etc/os-release
[2026-03-08 22:36:09] 2026-03-08 21:35:39,521 | INFO     | cat /etc/os-release:
[2026-03-08 22:36:09] NAME="CentOS Linux"
[2026-03-08 22:36:09] VERSION="7 (Core)"
[2026-03-08 22:36:09] ID="centos"
[2026-03-08 22:36:09] ID_LIKE="rhel fedora"
[2026-03-08 22:36:09] VERSION_ID="7"
[2026-03-08 22:36:09] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-08 22:36:09] ANSI_COLOR="0;31"
[2026-03-08 22:36:09] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-08 22:36:09] HOME_URL="https://www.centos.org/"
[2026-03-08 22:36:09] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-08 22:36:09] 
[2026-03-08 22:36:09] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-08 22:36:09] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-08 22:36:09] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-08 22:36:09] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-08 22:36:09] 
[2026-03-08 22:36:09] 2026-03-08 21:35:39,521 | INFO     | **************************************
[2026-03-08 22:36:09] 2026-03-08 21:35:40,024 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-03-08 22:36:09] 2026-03-08 21:35:40,041 | INFO     | sufficient remaining disk space (227311353856 B)
[2026-03-08 22:36:09] 2026-03-08 21:35:40,041 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-08 22:36:09] 2026-03-08 21:35:40,041 | INFO     | current server update state: UPDATING_FINAL
[2026-03-08 22:36:09] 2026-03-08 21:35:40,042 | INFO     | update_server=False
[2026-03-08 22:36:09] 2026-03-08 21:35:40,042 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-08 22:36:09] 2026-03-08 21:35:40,042 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-08 22:36:09] 2026-03-08 21:35:40,042 | INFO     | aborting loop
[2026-03-08 22:36:09] 2026-03-08 21:35:40,042 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-08 22:36:09] 2026-03-08 21:35:40,042 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-08 22:36:09] 2026-03-08 21:35:40,243 | INFO     | all payload control threads have been joined
[2026-03-08 22:36:09] 2026-03-08 21:35:40,740 | INFO     | all data control threads have been joined
[2026-03-08 22:36:09] 2026-03-08 21:35:40,971 | INFO     | all job control threads have been joined
[2026-03-08 22:36:09] 2026-03-08 21:35:41,046 | INFO     | [job] queue monitor thread has finished
[2026-03-08 22:36:09] 2026-03-08 21:35:41,046 | INFO     | [job] job monitor thread has finished
[2026-03-08 22:36:09] 2026-03-08 21:35:41,047 | INFO     | [job] retrieve thread has finished
[2026-03-08 22:36:09] 2026-03-08 21:35:41,101 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-08 22:36:09] 2026-03-08 21:35:41,249 | INFO     | [payload] control thread has finished
[2026-03-08 22:36:09] 2026-03-08 21:35:41,336 | INFO     | [payload] validate_post thread has finished
[2026-03-08 22:36:09] 2026-03-08 21:35:41,746 | INFO     | [data] control thread has finished
[2026-03-08 22:36:09] 2026-03-08 21:35:41,953 | INFO     | [job] validate thread has finished
[2026-03-08 22:36:09] 2026-03-08 21:35:41,977 | INFO     | [job] control thread has finished
[2026-03-08 22:36:09] 2026-03-08 21:35:42,047 | INFO     | [data] copytool_out thread has finished
[2026-03-08 22:36:09] 2026-03-08 21:35:42,112 | INFO     | [job] create_data_payload thread has finished
[2026-03-08 22:36:09] 2026-03-08 21:35:42,132 | INFO     | [payload] validate_pre thread has finished
[2026-03-08 22:36:09] 2026-03-08 21:35:42,134 | INFO     | [payload] execute_payloads thread has finished
[2026-03-08 22:36:09] 2026-03-08 21:35:42,262 | INFO     | [data] copytool_in thread has finished
[2026-03-08 22:36:09] 2026-03-08 21:35:42,391 | INFO     | [payload] failed_post thread has finished
[2026-03-08 22:36:09] 2026-03-08 21:35:43,000 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-08 22:36:09] 2026-03-08 21:35:47,007 | INFO     | [data] queue_monitor thread has finished
[2026-03-08 22:36:09] 2026-03-08 21:35:47,802 | INFO     | [monitor] cgroup control has ended
[2026-03-08 22:36:09] 2026-03-08 21:35:49,677 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139863101171520)>', '<ExcThread(monitor, started 139862220977920)>']
[2026-03-08 22:36:09] 2026-03-08 21:35:54,703 | INFO     | all workflow threads have been joined
[2026-03-08 22:36:09] 2026-03-08 21:35:54,703 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-08 22:36:09] 2026-03-08 21:35:54,704 | INFO     | traces error code: 0
[2026-03-08 22:36:09] 2026-03-08 21:35:54,704 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-08 22:36:09] 2026-03-08 21:36:09,666 | INFO     | PID=2573299 has CPU usage=2.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-03-08 22:36:09] 2026-03-08 21:36:09,667 | INFO     | found 0 job(s) in 20 queues
[2026-03-08 22:36:09] 2026-03-08 21:36:09,667 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-08 22:36:09] 2026-03-08 21:36:09,667 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-08 22:36:09] 2026-03-08 21:36:09,667 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-08 22:36:09] 2026-03-08 21:36:09,667 | INFO     | [monitor] control thread has ended
[2026-03-08 22:36:09] 2026-03-08 21:36:09,742 [wrapper] ==== pilot stdout END ====
[2026-03-08 22:36:09] 2026-03-08 21:36:09,746 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-08 22:36:09] 2026-03-08 21:36:09,750 [wrapper] pilotpid: 2573299
[2026-03-08 22:36:09] 2026-03-08 21:36:09,754 [wrapper] Pilot exit status: 0
[2026-03-08 22:36:09] 2026-03-08 21:36:09,766 [wrapper] pandaids: 7039297072
[2026-03-08 22:36:09] 2026-03-08 21:36:09,789 [wrapper] cleanup supervisor_pilot 2584410 2573300
[2026-03-08 22:36:09] 2026-03-08 21:36:09,794 [wrapper] Test setup, not cleaning
[2026-03-08 22:36:09] 2026-03-08 21:36:09,798 [wrapper] apfmon messages muted
[2026-03-08 22:36:09] 2026-03-08 21:36:09,802 [wrapper] ==== wrapper stdout END ====
[2026-03-08 22:36:09] 2026-03-08 21:36:09,806 [wrapper] ==== wrapper stderr END ====
[2026-03-08 22:36:09]  *** Error codes and diagnostics ***
[2026-03-08 22:36:09]     "exeErrorCode": 0,
[2026-03-08 22:36:09]     "exeErrorDiag": "",
[2026-03-08 22:36:09]     "pilotErrorCode": 0,
[2026-03-08 22:36:09]     "pilotErrorDiag": "",
[2026-03-08 22:36:09]  *** Listing of results directory ***
[2026-03-08 22:36:09] total 619528
[2026-03-08 22:36:09] -rw-r--r-- 1 boinc boinc    584627 Mar  7 22:34 pilot3.tar.gz
[2026-03-08 22:36:09] -rw-r--r-- 1 boinc boinc      5111 Mar  7 22:55 queuedata.json
[2026-03-08 22:36:09] -rwx------ 1 boinc boinc     36322 Mar  7 22:55 runpilot2-wrapper.sh
[2026-03-08 22:36:09] -rw-r--r-- 1 boinc boinc       100 Mar  8 21:28 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-08 22:36:09] -rwxr-xr-x 1 boinc boinc      7986 Mar  8 21:28 run_atlas
[2026-03-08 22:36:09] -rw-r--r-- 1 boinc boinc       105 Mar  8 21:28 job.xml
[2026-03-08 22:36:09] -rw-r--r-- 2 boinc boinc 442105938 Mar  8 21:28 EVNT.46701403._000415.pool.root.1
[2026-03-08 22:36:09] -rw-r--r-- 2 boinc boinc    597953 Mar  8 21:28 input.tar.gz
[2026-03-08 22:36:09] -rw-r--r-- 2 boinc boinc     15845 Mar  8 21:28 start_atlas.sh
[2026-03-08 22:36:09] drwxrwx--x 2 boinc boinc      4096 Mar  8 21:28 shared
[2026-03-08 22:36:09] -rw-r--r-- 1 boinc boinc         0 Mar  8 21:28 boinc_setup_complete
[2026-03-08 22:36:09] -rw-r--r-- 1 boinc boinc      6376 Mar  8 21:28 init_data.xml
[2026-03-08 22:36:09] -rw-r--r-- 1 boinc boinc         0 Mar  8 21:28 boinc_lockfile
[2026-03-08 22:36:09] -rw-r--r-- 1 boinc boinc      2563 Mar  8 21:28 pandaJob.out
[2026-03-08 22:36:09] -rw------- 1 boinc boinc    999108 Mar  8 21:28 agis_schedconf.cvmfs.json
[2026-03-08 22:36:09] -rw------- 1 boinc boinc   1511578 Mar  8 21:28 agis_ddmendpoints.agis.ALL.json
[2026-03-08 22:36:09] -rw------- 1 boinc boinc       421 Mar  8 21:28 workernode_map.json
[2026-03-08 22:36:09] drwx------ 5 boinc boinc      4096 Mar  8 21:28 pilot3
[2026-03-08 22:36:09] -rw------- 1 boinc boinc 186695333 Mar  8 22:35 HITS.48955006._020709.pool.root.1
[2026-03-08 22:36:09] -rw-r--r-- 1 boinc boinc       530 Mar  8 22:35 boinc_task_state.xml
[2026-03-08 22:36:09] -rw------- 1 boinc boinc      1020 Mar  8 22:35 memory_monitor_summary.json
[2026-03-08 22:36:09] -rw------- 1 boinc boinc    245055 Mar  8 22:35 log.48955006._020709.job.log.tgz.1
[2026-03-08 22:36:09] -rw------- 1 boinc boinc      6309 Mar  8 22:35 heartbeat.json
[2026-03-08 22:36:09] -rw-r--r-- 1 boinc boinc      8192 Mar  8 22:36 boinc_mmap_file
[2026-03-08 22:36:09] -rw-r--r-- 1 boinc boinc        27 Mar  8 22:36 wrapper_checkpoint.txt
[2026-03-08 22:36:09] -rw------- 1 boinc boinc       747 Mar  8 22:36 pilotlog.txt
[2026-03-08 22:36:09] -rw------- 1 boinc boinc        95 Mar  8 22:36 pilot_heartbeat.json
[2026-03-08 22:36:09] -rw------- 1 boinc boinc    597950 Mar  8 22:36 log.48955006._020709.job.log.1
[2026-03-08 22:36:09] -rw------- 1 boinc boinc       357 Mar  8 22:36 output.list
[2026-03-08 22:36:09] -rw-r--r-- 1 boinc boinc       620 Mar  8 22:36 runtime_log
[2026-03-08 22:36:09] -rw------- 1 boinc boinc    860160 Mar  8 22:36 result.tar.gz
[2026-03-08 22:36:09] -rw-r--r-- 1 boinc boinc      8896 Mar  8 22:36 runtime_log.err
[2026-03-08 22:36:09] -rw------- 1 boinc boinc       657 Mar  8 22:36 AAwMDm2nEJ9nsSi4ap6QjLDmwznN0nGgGQJmIVkRDmrHXLDmAsocdn.diag
[2026-03-08 22:36:09] -rw-r--r-- 1 boinc boinc     10704 Mar  8 22:36 stderr.txt
[2026-03-08 22:36:09] HITS file was successfully produced:
[2026-03-08 22:36:09] -rw------- 1 boinc boinc 186695333 Mar  8 22:35 shared/HITS.pool.root.1
[2026-03-08 22:36:09]  *** Contents of shared directory: ***
[2026-03-08 22:36:09] total 615516
[2026-03-08 22:36:09] -rw-r--r-- 2 boinc boinc 442105938 Mar  8 21:28 ATLAS.root_0
[2026-03-08 22:36:09] -rw-r--r-- 2 boinc boinc    597953 Mar  8 21:28 input.tar.gz
[2026-03-08 22:36:09] -rw-r--r-- 2 boinc boinc     15845 Mar  8 21:28 start_atlas.sh
[2026-03-08 22:36:09] -rw------- 1 boinc boinc 186695333 Mar  8 22:35 HITS.pool.root.1
[2026-03-08 22:36:09] -rw------- 1 boinc boinc    860160 Mar  8 22:36 result.tar.gz
22:36:11 (2569186): run_atlas exited; CPU time 15071.102502
22:36:11 (2569186): called boinc_finish(0)

</stderr_txt>
]]>

©2026 CERN