Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
10:49:06 (3178094): wrapper (7.7.26015): starting
10:49:06 (3178094): wrapper: running run_atlas (--nthreads 4)
[2026-03-09 10:49:06] Arguments: --nthreads 4
[2026-03-09 10:49:06] Threads: 4
[2026-03-09 10:49:06] Checking for CVMFS
[2026-03-09 10:49:06] No cvmfs_config command found, will try listing directly
[2026-03-09 10:49:06] CVMFS is ok
[2026-03-09 10:49:06] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-09 10:49:06] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-09 10:49:06] Further information can be found at the LHC@home message board.
[2026-03-09 10:49:06] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-09 10:49:06] Checking for apptainer binary...
[2026-03-09 10:49:06] which: no apptainer in ((null))
[2026-03-09 10:49:06] apptainer is not installed, using version from CVMFS
[2026-03-09 10:49:06] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-09 10:49:06] WARNING: Environment variable TMPDIR already has value [/var/lib/boinc/var/slot236/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut19.grid.cesnet.cz
[2026-03-09 10:49:06] apptainer works
[2026-03-09 10:49:06] Set ATHENA_PROC_NUMBER=4
[2026-03-09 10:49:06] Set ATHENA_CORE_NUMBER=4
[2026-03-09 10:49:06] Starting ATLAS job with PandaID=7039431824
[2026-03-09 10:49:06] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc/var/slot236/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-09 12:07:34]  *** The last 200 lines of the pilot log: ***
[2026-03-09 12:07:34]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/9d/18/log.48955006._022604.job.log.tgz.1
[2026-03-09 12:07:34]  workdir=None
[2026-03-09 12:07:34] ]
[2026-03-09 12:07:34] 2026-03-09 11:06:23,262 | INFO     | transferring file log.48955006._022604.job.log.tgz.1 from /var/lib/boinc/var/slot236/slots/0/PanDA_Pilot-7039431824/log.48955006._022604.job.log.tgz.1 to /var/lib/
[2026-03-09 12:07:34] 2026-03-09 11:06:23,262 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc/var/slot236/slots/0/PanDA_Pilot-7039431824/log.48955006._022604.job.log.tgz.1 /var/lib/boinc/var/slot236/slots/0/
[2026-03-09 12:07:34] 2026-03-09 11:06:23,278 | INFO     | adding to output.list: log.48955006._022604.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/9d/18/log.48955006._022604.job.log.tg
[2026-03-09 12:07:34] 2026-03-09 11:06:23,279 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-03-09 12:07:34] 2026-03-09 11:06:23,279 | INFO     | summary of transferred files:
[2026-03-09 12:07:34] 2026-03-09 11:06:23,279 | INFO     |  -- lfn=log.48955006._022604.job.log.tgz.1, status_code=0, status=transferred
[2026-03-09 12:07:34] 2026-03-09 11:06:23,279 | INFO     | stage-out finished correctly
[2026-03-09 12:07:34] 2026-03-09 11:06:24,551 | INFO     | time since job start (4625s) is within the limit (349056.0s)
[2026-03-09 12:07:34] 2026-03-09 11:06:25,539 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-03-09 12:07:34] 2026-03-09 11:06:26,039 | WARNING  | process 3200047 can no longer be monitored (due to stat problems) - aborting
[2026-03-09 12:07:34] 2026-03-09 11:06:26,040 | INFO     | using path: /var/lib/boinc/var/slot236/slots/0/PanDA_Pilot-7039431824/memory_monitor_summary.json (trf name=prmon)
[2026-03-09 12:07:34] 2026-03-09 11:06:26,040 | INFO     | using path: /var/lib/boinc/var/slot236/slots/0/PanDA_Pilot-7039431824/memory_monitor_summary.json (trf name=prmon)
[2026-03-09 12:07:34] 2026-03-09 11:06:26,040 | WARNING  | memory limits not set in config, using defaults: 'NoneType' object has no attribute 'get'
[2026-03-09 12:07:34] 2026-03-09 11:06:26,040 | WARNING  | maxPSS not found in memory monitor output
[2026-03-09 12:07:34] 2026-03-09 11:06:26,041 | INFO     | payload log (log.EVNTtoHITS) within allowed size limit (2147483648 B): 3768078 B
[2026-03-09 12:07:34] 2026-03-09 11:06:26,041 | INFO     | payload log (payload.stdout) within allowed size limit (2147483648 B): 15859 B
[2026-03-09 12:07:34] 2026-03-09 11:06:26,041 | INFO     | executing command: df -mP /var/lib/boinc/var/slot236/slots/0
[2026-03-09 12:07:34] 2026-03-09 11:06:26,056 | INFO     | sufficient remaining disk space (20849885184 B)
[2026-03-09 12:07:34] 2026-03-09 11:06:26,056 | INFO     | work directory size check will use 5033164800 B as a max limit (20% grace limit added, divider=1)
[2026-03-09 12:07:34] 2026-03-09 11:06:26,056 | INFO     | size of work directory /var/lib/boinc/var/slot236/slots/0/PanDA_Pilot-7039431824: 4066909 B (within 5033164800 B limit)
[2026-03-09 12:07:34] 2026-03-09 11:06:26,057 | INFO     | pfn file=/var/lib/boinc/var/slot236/slots/0/PanDA_Pilot-7039431824/HITS.48955006._022604.pool.root.1 does not exist (skip from workdir size calculation)
[2026-03-09 12:07:34] 2026-03-09 11:06:26,057 | INFO     | total size of present files: 0 B (workdir size: 4066909 B)
[2026-03-09 12:07:34] 2026-03-09 11:06:26,057 | INFO     | output file size check: skipping output file /var/lib/boinc/var/slot236/slots/0/PanDA_Pilot-7039431824/HITS.48955006._022604.pool.root.1 since it does not exist
[2026-03-09 12:07:34] 2026-03-09 11:06:26,530 | INFO     | number of running child processes to parent process 3200047: 1
[2026-03-09 12:07:34] 2026-03-09 11:06:26,530 | INFO     | maximum number of monitored processes: 6
[2026-03-09 12:07:34] 2026-03-09 11:06:26,559 | INFO     | time since job start (4627s) is within the limit (349056.0s)
[2026-03-09 12:07:34] 2026-03-09 11:06:27,670 | INFO     | job 7039431824 has state=finished
[2026-03-09 12:07:34] 2026-03-09 11:06:27,670 | INFO     | preparing for final server update for job 7039431824 in state='finished'
[2026-03-09 12:07:34] 2026-03-09 11:06:27,670 | INFO     | reading metadata from: /var/lib/boinc/var/slot236/slots/0/PanDA_Pilot-7039431824/jobReport.json
[2026-03-09 12:07:34] 2026-03-09 11:06:27,672 | INFO     | added worker_node to metadata from /var/lib/boinc/var/slot236/slots/0/workernode_map.json
[2026-03-09 12:07:34] 2026-03-09 11:06:27,672 | INFO     | this job has now completed (state=finished)
[2026-03-09 12:07:34] 2026-03-09 11:06:27,672 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-03-09 12:07:34] 2026-03-09 11:06:27,672 | INFO     | log transfer has been attempted: DONE
[2026-03-09 12:07:34] 2026-03-09 11:06:27,672 | INFO     | job 7039431824 has finished - writing final server update
[2026-03-09 12:07:34] 2026-03-09 11:06:27,673 | WARNING  | failed to read HTCondor job classAd: [Errno 2] No such file or directory: '/scratch/condor/execute/dir_815905/.job.ad'
[2026-03-09 12:07:34] 2026-03-09 11:06:27,673 | INFO     | total number of processed events: 400 (read)
[2026-03-09 12:07:34] 2026-03-09 11:06:27,690 | INFO     | using path: /var/lib/boinc/var/slot236/slots/0/PanDA_Pilot-7039431824/memory_monitor_summary.json (trf name=prmon)
[2026-03-09 12:07:34] 2026-03-09 11:06:27,691 | INFO     | extracted standard info from prmon json
[2026-03-09 12:07:34] 2026-03-09 11:06:27,691 | INFO     | extracted standard memory fields from prmon json
[2026-03-09 12:07:34] 2026-03-09 11:06:27,691 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-03-09 12:07:34] 2026-03-09 11:06:27,691 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-03-09 12:07:34] 2026-03-09 11:06:27,691 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-03-09 12:07:34] 2026-03-09 11:06:27,692 | INFO     | fitting pss+swap vs Time
[2026-03-09 12:07:34] 2026-03-09 11:06:27,692 | INFO     | sum of square deviations: 101843770.0
[2026-03-09 12:07:34] 2026-03-09 11:06:27,693 | INFO     | sum of deviations: -63262306.999999955
[2026-03-09 12:07:34] 2026-03-09 11:06:27,693 | INFO     | mean x: 1773052159.0
[2026-03-09 12:07:34] 2026-03-09 11:06:27,693 | INFO     | mean y: 2324428.695652174
[2026-03-09 12:07:34] 2026-03-09 11:06:27,693 | INFO     | intersect: 1103691453.9900885
[2026-03-09 12:07:34] 2026-03-09 11:06:27,693 | INFO     | chi2: 0.0003315640349670523
[2026-03-09 12:07:34] 2026-03-09 11:06:27,693 | INFO     | current memory leak: -0.62 B/s (using 69 data points, chi2=0.00)
[2026-03-09 12:07:34] 2026-03-09 11:06:27,693 | INFO     | could have reported an average CPU frequency of 3540 MHz (6 samples)
[2026-03-09 12:07:34] 2026-03-09 11:06:27,693 | INFO     | ..............................
[2026-03-09 12:07:34] 2026-03-09 11:06:27,693 | INFO     | . Timing measurements:
[2026-03-09 12:07:34] 2026-03-09 11:06:27,693 | INFO     | . get job = 0 s
[2026-03-09 12:07:34] 2026-03-09 11:06:27,693 | INFO     | . initial setup = 5 s
[2026-03-09 12:07:34] 2026-03-09 11:06:27,693 | INFO     | . payload setup = 5 s
[2026-03-09 12:07:34] 2026-03-09 11:06:27,693 | INFO     | . stage-in = 0 s
[2026-03-09 12:07:34] 2026-03-09 11:06:27,693 | INFO     | . payload execution = 4603 s
[2026-03-09 12:07:34] 2026-03-09 11:06:27,693 | INFO     | . stage-out = 0 s
[2026-03-09 12:07:34] 2026-03-09 11:06:27,693 | INFO     | . log creation = 0 s
[2026-03-09 12:07:34] 2026-03-09 11:06:27,693 | INFO     | ..............................
[2026-03-09 12:07:34] 2026-03-09 11:06:27,744 | INFO     | 
[2026-03-09 12:07:34] 2026-03-09 11:06:27,744 | INFO     | job summary report
[2026-03-09 12:07:34] 2026-03-09 11:06:27,744 | INFO     | --------------------------------------------------
[2026-03-09 12:07:34] 2026-03-09 11:06:27,744 | INFO     | PanDA job id: 7039431824
[2026-03-09 12:07:34] 2026-03-09 11:06:27,744 | INFO     | task id: 48955006
[2026-03-09 12:07:34] 2026-03-09 11:06:27,744 | INFO     | errors: (none)
[2026-03-09 12:07:34] 2026-03-09 11:06:27,744 | INFO     | status: LOG_TRANSFER = DONE 
[2026-03-09 12:07:34] 2026-03-09 11:06:27,744 | INFO     | pilot state: finished 
[2026-03-09 12:07:34] 2026-03-09 11:06:27,745 | INFO     | transexitcode: 0
[2026-03-09 12:07:34] 2026-03-09 11:06:27,745 | INFO     | exeerrorcode: 0
[2026-03-09 12:07:34] 2026-03-09 11:06:27,745 | INFO     | exeerrordiag: 
[2026-03-09 12:07:34] 2026-03-09 11:06:27,745 | INFO     | exitcode: 0
[2026-03-09 12:07:34] 2026-03-09 11:06:27,745 | INFO     | exitmsg: OK
[2026-03-09 12:07:34] 2026-03-09 11:06:27,745 | INFO     | cpuconsumptiontime: 17558 s
[2026-03-09 12:07:34] 2026-03-09 11:06:27,745 | INFO     | nevents: 400
[2026-03-09 12:07:34] 2026-03-09 11:06:27,745 | INFO     | neventsw: 0
[2026-03-09 12:07:34] 2026-03-09 11:06:27,745 | INFO     | pid: 3200047
[2026-03-09 12:07:34] 2026-03-09 11:06:27,745 | INFO     | pgrp: 3200047
[2026-03-09 12:07:34] 2026-03-09 11:06:27,745 | INFO     | corecount: 4
[2026-03-09 12:07:34] 2026-03-09 11:06:27,745 | INFO     | event service: False
[2026-03-09 12:07:34] 2026-03-09 11:06:27,745 | INFO     | sizes: {0: 2279809, 1: 2280270, 11: 2280270, 4612: 2306500, 4613: 2315522, 4615: 2315578, 4617: 2315928}
[2026-03-09 12:07:34] 2026-03-09 11:06:27,745 | INFO     | --------------------------------------------------
[2026-03-09 12:07:34] 2026-03-09 11:06:27,745 | INFO     | 
[2026-03-09 12:07:34] 2026-03-09 11:06:27,745 | INFO     | executing command: ls -lF /var/lib/boinc/var/slot236/slots/0
[2026-03-09 12:07:34] 2026-03-09 11:06:27,763 | INFO     | queue jobs had 0 job(s) [purged]
[2026-03-09 12:07:34] 2026-03-09 11:06:27,763 | INFO     | queue payloads had 0 job(s) [purged]
[2026-03-09 12:07:34] 2026-03-09 11:06:27,763 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-09 12:07:34] 2026-03-09 11:06:27,763 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-09 12:07:34] 2026-03-09 11:06:27,763 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-09 12:07:34] 2026-03-09 11:06:27,763 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-09 12:07:34] 2026-03-09 11:06:27,763 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-09 12:07:34] 2026-03-09 11:06:27,763 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-09 12:07:34] 2026-03-09 11:06:27,763 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-09 12:07:34] 2026-03-09 11:06:27,763 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-09 12:07:34] 2026-03-09 11:06:27,764 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-09 12:07:34] 2026-03-09 11:06:27,764 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-09 12:07:34] 2026-03-09 11:06:27,764 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-09 12:07:34] 2026-03-09 11:06:27,764 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-09 12:07:34] 2026-03-09 11:06:27,764 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-09 12:07:34] 2026-03-09 11:06:27,764 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-09 12:07:34] 2026-03-09 11:06:27,764 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-09 12:07:34] 2026-03-09 11:06:27,764 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-09 12:07:34] 2026-03-09 11:06:27,764 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-09 12:07:34] 2026-03-09 11:06:27,764 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-09 12:07:34] 2026-03-09 11:06:27,764 | INFO     | job 7039431824 has completed (purged errors)
[2026-03-09 12:07:34] 2026-03-09 11:06:27,764 | INFO     | overall cleanup function is called
[2026-03-09 12:07:34] 2026-03-09 11:06:28,771 | INFO     | --- collectZombieJob: --- 10, [3200047]
[2026-03-09 12:07:34] 2026-03-09 11:06:28,771 | INFO     | zombie collector waiting for pid 3200047
[2026-03-09 12:07:34] 2026-03-09 11:06:28,771 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-09 12:07:34] 2026-03-09 11:06:28,771 | INFO     | collected zombie processes
[2026-03-09 12:07:34] 2026-03-09 11:06:28,772 | INFO     | will attempt to kill all subprocesses of pid=3200047
[2026-03-09 12:07:34] 2026-03-09 11:06:29,233 | INFO     | process IDs to be killed: [3200047] (in reverse order)
[2026-03-09 12:07:34] 2026-03-09 11:06:29,461 | WARNING  | found no corresponding commands to process id(s)
[2026-03-09 12:07:34] 2026-03-09 11:06:29,461 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-09 12:07:34] 2026-03-09 11:06:29,489 | INFO     | did not find any defunct processes belonging to 3200047
[2026-03-09 12:07:34] 2026-03-09 11:06:29,514 | INFO     | did not find any defunct processes belonging to 3200047
[2026-03-09 12:07:34] 2026-03-09 11:06:29,514 | INFO     | ready for new job
[2026-03-09 12:07:34] 2026-03-09 11:06:29,514 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-09 12:07:34] 2026-03-09 11:06:29,515 | INFO     | **************************************
[2026-03-09 12:07:34] 2026-03-09 11:06:29,516 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-03-09 12:07:34] 2026-03-09 11:06:29,516 | INFO     | **************************************
[2026-03-09 12:07:34] 2026-03-09 11:06:29,516 | INFO     | 
[2026-03-09 12:07:34] 2026-03-09 11:06:29,521 | INFO     | architecture information:
[2026-03-09 12:07:34] 2026-03-09 11:06:29,522 | INFO     | executing command: cat /etc/os-release
[2026-03-09 12:07:34] 2026-03-09 11:06:29,538 | INFO     | cat /etc/os-release:
[2026-03-09 12:07:34] NAME="CentOS Linux"
[2026-03-09 12:07:34] VERSION="7 (Core)"
[2026-03-09 12:07:34] ID="centos"
[2026-03-09 12:07:34] ID_LIKE="rhel fedora"
[2026-03-09 12:07:34] VERSION_ID="7"
[2026-03-09 12:07:34] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-09 12:07:34] ANSI_COLOR="0;31"
[2026-03-09 12:07:34] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-09 12:07:34] HOME_URL="https://www.centos.org/"
[2026-03-09 12:07:34] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-09 12:07:34] 
[2026-03-09 12:07:34] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-09 12:07:34] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-09 12:07:34] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-09 12:07:34] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-09 12:07:34] 
[2026-03-09 12:07:34] 2026-03-09 11:06:29,538 | INFO     | **************************************
[2026-03-09 12:07:34] 2026-03-09 11:06:30,041 | INFO     | executing command: df -mP /var/lib/boinc/var/slot236/slots/0
[2026-03-09 12:07:34] 2026-03-09 11:06:30,076 | INFO     | sufficient remaining disk space (20849885184 B)
[2026-03-09 12:07:34] 2026-03-09 11:06:30,076 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-09 12:07:34] 2026-03-09 11:06:30,076 | INFO     | current server update state: UPDATING_FINAL
[2026-03-09 12:07:34] 2026-03-09 11:06:30,076 | INFO     | update_server=False
[2026-03-09 12:07:34] 2026-03-09 11:06:30,076 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-09 12:07:34] 2026-03-09 11:06:30,077 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-09 12:07:34] 2026-03-09 11:06:30,077 | INFO     | aborting loop
[2026-03-09 12:07:34] 2026-03-09 11:06:30,147 | INFO     | all payload control threads have been joined
[2026-03-09 12:07:34] 2026-03-09 11:06:30,272 | INFO     | all job control threads have been joined
[2026-03-09 12:07:34] 2026-03-09 11:06:30,551 | INFO     | all data control threads have been joined
[2026-03-09 12:07:34] 2026-03-09 11:06:31,081 | INFO     | [job] retrieve thread has finished
[2026-03-09 12:07:34] 2026-03-09 11:06:31,082 | INFO     | [job] job monitor thread has finished
[2026-03-09 12:07:34] 2026-03-09 11:06:31,152 | INFO     | [payload] control thread has finished
[2026-03-09 12:07:34] 2026-03-09 11:06:31,229 | INFO     | [payload] execute_payloads thread has finished
[2026-03-09 12:07:34] 2026-03-09 11:06:31,270 | INFO     | [payload] validate_pre thread has finished
[2026-03-09 12:07:34] 2026-03-09 11:06:31,278 | INFO     | [job] control thread has finished
[2026-03-09 12:07:34] 2026-03-09 11:06:31,344 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-09 12:07:34] 2026-03-09 11:06:31,358 | INFO     | [data] copytool_in thread has finished
[2026-03-09 12:07:34] 2026-03-09 11:06:31,556 | INFO     | [data] control thread has finished
[2026-03-09 12:07:34] 2026-03-09 11:06:31,600 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-09 12:07:34] 2026-03-09 11:06:31,722 | INFO     | [payload] validate_post thread has finished
[2026-03-09 12:07:34] 2026-03-09 11:06:32,126 | INFO     | [payload] failed_post thread has finished
[2026-03-09 12:07:34] 2026-03-09 11:06:32,405 | INFO     | [job] validate thread has finished
[2026-03-09 12:07:34] 2026-03-09 11:06:32,494 | INFO     | [job] create_data_payload thread has finished
[2026-03-09 12:07:34] 2026-03-09 11:06:32,754 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-09 12:07:34] 2026-03-09 11:06:33,349 | INFO     | [data] copytool_out thread has finished
[2026-03-09 12:07:34] 2026-03-09 11:06:33,759 | INFO     | [job] queue monitor thread has finished
[2026-03-09 12:07:34] 2026-03-09 11:06:35,605 | INFO     | [data] queue_monitor thread has finished
[2026-03-09 12:07:34] 2026-03-09 11:06:40,797 | INFO     | job.realtimelogging is not enabled
[2026-03-09 12:07:34] 2026-03-09 11:06:41,802 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-09 12:07:34] 2026-03-09 11:07:00,110 | INFO     | PID=3185424 has CPU usage=7.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-03-09 12:07:34] 2026-03-09 11:07:00,111 | INFO     | .. there are 51 such processes running
[2026-03-09 12:07:34] 2026-03-09 11:07:00,111 | INFO     | found 0 job(s) in 20 queues
[2026-03-09 12:07:34] 2026-03-09 11:07:00,111 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-09 12:07:34] 2026-03-09 11:07:00,111 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-09 12:07:34] 2026-03-09 11:07:26,839 | INFO     | [monitor] cgroup control has ended
[2026-03-09 12:07:34] 2026-03-09 11:07:28,835 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23199618750272)>', '<ExcThread(monitor, started 23199372015360)>']
[2026-03-09 12:07:34] 2026-03-09 11:07:29,257 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-09 12:07:34] 2026-03-09 11:07:29,257 | INFO     | [monitor] control thread has ended
[2026-03-09 12:07:34] 2026-03-09 11:07:33,860 | INFO     | all workflow threads have been joined
[2026-03-09 12:07:34] 2026-03-09 11:07:33,860 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-09 12:07:34] 2026-03-09 11:07:33,860 | INFO     | traces error code: 0
[2026-03-09 12:07:34] 2026-03-09 11:07:33,860 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-09 12:07:34] 2026-03-09 11:07:33,996 [wrapper] ==== pilot stdout END ====
[2026-03-09 12:07:34] 2026-03-09 11:07:33,998 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-09 12:07:34] 2026-03-09 11:07:33,999 [wrapper] pilotpid: 3185424
[2026-03-09 12:07:34] 2026-03-09 11:07:34,002 [wrapper] Pilot exit status: 0
[2026-03-09 12:07:34] 2026-03-09 11:07:34,012 [wrapper] pandaids: 7039431824
[2026-03-09 12:07:34] 2026-03-09 11:07:34,140 [wrapper] cleanup supervisor_pilot 3851910 3185425
[2026-03-09 12:07:34] 2026-03-09 11:07:34,142 [wrapper] Test setup, not cleaning
[2026-03-09 12:07:34] 2026-03-09 11:07:34,144 [wrapper] apfmon messages muted
[2026-03-09 12:07:34] 2026-03-09 11:07:34,146 [wrapper] ==== wrapper stdout END ====
[2026-03-09 12:07:34] 2026-03-09 11:07:34,148 [wrapper] ==== wrapper stderr END ====
[2026-03-09 12:07:34]  *** Error codes and diagnostics ***
[2026-03-09 12:07:34]     "exeErrorCode": 0,
[2026-03-09 12:07:34]     "exeErrorDiag": "",
[2026-03-09 12:07:34]     "pilotErrorCode": 0,
[2026-03-09 12:07:34]     "pilotErrorDiag": "",
[2026-03-09 12:07:34]  *** Listing of results directory ***
[2026-03-09 12:07:34] total 611676
[2026-03-09 12:07:34] -rw-r--r--. 1 boinc boinc    584627 Mar  8 03:20 pilot3.tar.gz
[2026-03-09 12:07:34] -rwx------. 1 boinc boinc     36322 Mar  8 03:21 runpilot2-wrapper.sh
[2026-03-09 12:07:34] -rw-r--r--. 1 boinc boinc      5111 Mar  8 03:21 queuedata.json
[2026-03-09 12:07:34] -rw-r--r--. 1 boinc boinc       100 Mar  9 10:49 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-09 12:07:34] -rwxr-xr-x. 1 boinc boinc      7986 Mar  9 10:49 run_atlas
[2026-03-09 12:07:34] -rw-r--r--. 1 boinc boinc       105 Mar  9 10:49 job.xml
[2026-03-09 12:07:34] -rw-r--r--. 2 boinc boinc 442233757 Mar  9 10:49 EVNT.46701403._000452.pool.root.1
[2026-03-09 12:07:34] -rw-r--r--. 2 boinc boinc     15845 Mar  9 10:49 start_atlas.sh
[2026-03-09 12:07:34] drwxrwx--x. 2 boinc boinc      4096 Mar  9 10:49 shared
[2026-03-09 12:07:34] -rw-r--r--. 2 boinc boinc    597958 Mar  9 10:49 input.tar.gz
[2026-03-09 12:07:34] -rw-r--r--. 1 boinc boinc      6708 Mar  9 10:49 init_data.xml
[2026-03-09 12:07:34] -rw-r--r--. 1 boinc boinc         0 Mar  9 10:49 boinc_lockfile
[2026-03-09 12:07:34] -rw-r--r--. 1 boinc boinc      2564 Mar  9 10:49 pandaJob.out
[2026-03-09 12:07:34] -rw-------. 1 boinc boinc    987066 Mar  9 10:49 agis_schedconf.cvmfs.json
[2026-03-09 12:07:34] -rw-------. 1 boinc boinc   1511578 Mar  9 10:49 agis_ddmendpoints.agis.ALL.json
[2026-03-09 12:07:34] -rw-------. 1 boinc boinc       445 Mar  9 10:49 workernode_map.json
[2026-03-09 12:07:34] drwx------. 5 boinc boinc      4096 Mar  9 10:49 pilot3
[2026-03-09 12:07:34] -rw-------. 1 boinc boinc 178234891 Mar  9 12:05 HITS.48955006._022604.pool.root.1
[2026-03-09 12:07:34] -rw-------. 1 boinc boinc      1030 Mar  9 12:06 memory_monitor_summary.json
[2026-03-09 12:07:34] -rw-------. 1 boinc boinc    303052 Mar  9 12:06 log.48955006._022604.job.log.tgz.1
[2026-03-09 12:07:34] -rw-r--r--. 1 boinc boinc       530 Mar  9 12:06 boinc_task_state.xml
[2026-03-09 12:07:34] -rw-------. 1 boinc boinc      6356 Mar  9 12:06 heartbeat.json
[2026-03-09 12:07:34] -rw-------. 1 boinc boinc        95 Mar  9 12:07 pilot_heartbeat.json
[2026-03-09 12:07:34] -rw-r--r--. 1 boinc boinc      8192 Mar  9 12:07 boinc_mmap_file
[2026-03-09 12:07:34] -rw-r--r--. 1 boinc boinc        27 Mar  9 12:07 wrapper_checkpoint.txt
[2026-03-09 12:07:34] -rw-------. 1 boinc boinc      4902 Mar  9 12:07 pilotlog.txt
[2026-03-09 12:07:34] -rw-------. 1 boinc boinc    681004 Mar  9 12:07 log.48955006._022604.job.log.1
[2026-03-09 12:07:34] -rw-------. 1 boinc boinc       357 Mar  9 12:07 output.list
[2026-03-09 12:07:34] -rw-r--r--. 1 boinc boinc       620 Mar  9 12:07 runtime_log
[2026-03-09 12:07:34] -rw-------. 1 boinc boinc   1003520 Mar  9 12:07 result.tar.gz
[2026-03-09 12:07:34] -rw-r--r--. 1 boinc boinc      9221 Mar  9 12:07 runtime_log.err
[2026-03-09 12:07:34] -rw-------. 1 boinc boinc       661 Mar  9 12:07 HEYMDm3wIJ9nsSi4ap6QjLDmwznN0nGgGQJmIVkRDmpsXLDmqFVZ7n.diag
[2026-03-09 12:07:34] -rw-r--r--. 1 boinc boinc     22530 Mar  9 12:07 stderr.txt
[2026-03-09 12:07:34] HITS file was successfully produced:
[2026-03-09 12:07:34] -rw-------. 1 boinc boinc 178234891 Mar  9 12:05 shared/HITS.pool.root.1
[2026-03-09 12:07:34]  *** Contents of shared directory: ***
[2026-03-09 12:07:34] total 607520
[2026-03-09 12:07:34] -rw-r--r--. 2 boinc boinc 442233757 Mar  9 10:49 ATLAS.root_0
[2026-03-09 12:07:34] -rw-r--r--. 2 boinc boinc     15845 Mar  9 10:49 start_atlas.sh
[2026-03-09 12:07:34] -rw-r--r--. 2 boinc boinc    597958 Mar  9 10:49 input.tar.gz
[2026-03-09 12:07:34] -rw-------. 1 boinc boinc 178234891 Mar  9 12:05 HITS.pool.root.1
[2026-03-09 12:07:34] -rw-------. 1 boinc boinc   1003520 Mar  9 12:07 result.tar.gz
12:07:35 (3178094): run_atlas exited; CPU time 17764.631941
12:07:35 (3178094): called boinc_finish(0)

</stderr_txt>
]]>

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