Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
10:44:49 (695283): wrapper (7.7.26015): starting
10:44:49 (695283): wrapper: running run_atlas (--nthreads 4)
[2026-03-08 10:44:49] Arguments: --nthreads 4
[2026-03-08 10:44:49] Threads: 4
[2026-03-08 10:44:49] Checking for CVMFS
[2026-03-08 10:44:49] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-08 10:44:49] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-08 10:44:49] Running cvmfs_config stat atlas.cern.ch
[2026-03-08 10:44:49] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-08 10:44:49] 2.9.2.0 3116 3239 100116 157034 0 50 34443060 36864001 0 130560 0 1967506 99.989 126237 8520 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-03-08 10:44:49] CVMFS is ok
[2026-03-08 10:44:49] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-08 10:44:49] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-08 10:44:49] Further information can be found at the LHC@home message board.
[2026-03-08 10:44:49] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-08 10:44:49] Checking for apptainer binary...
[2026-03-08 10:44:49] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-08 10:44:49] Running /usr/bin/apptainer --version
[2026-03-08 10:44:49] apptainer version 1.4.1-1.1
[2026-03-08 10:44:49] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-08 10:44:49] thA373a
[2026-03-08 10:44:49] apptainer works
[2026-03-08 10:44:49] Set ATHENA_PROC_NUMBER=4
[2026-03-08 10:44:49] Set ATHENA_CORE_NUMBER=4
[2026-03-08 10:44:50] Starting ATLAS job with PandaID=7039268256
[2026-03-08 10:44:50] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-08 10:52:09]  *** The last 200 lines of the pilot log: ***
[2026-03-08 10:52:09] 2026-03-08 09:51:33,489 | INFO     | all job control threads have been joined
[2026-03-08 10:52:09] 2026-03-08 09:51:33,525 | INFO     | [payload] execute_payloads thread has finished
[2026-03-08 10:52:09] 2026-03-08 09:51:33,575 | INFO     | [payload] control thread has finished
[2026-03-08 10:52:09] 2026-03-08 09:51:33,715 | INFO     | [payload] failed_post thread has finished
[2026-03-08 10:52:09] 2026-03-08 09:51:33,886 | INFO     | [job] job monitor thread has finished
[2026-03-08 10:52:09] 2026-03-08 09:51:34,176 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-08 10:52:09] 2026-03-08 09:51:34,222 | INFO     | [data] copytool_out thread has finished
[2026-03-08 10:52:09] 2026-03-08 09:51:34,281 | INFO     | [payload] validate_post thread has finished
[2026-03-08 10:52:09] 2026-03-08 09:51:34,402 | INFO     | [job] validate thread has finished
[2026-03-08 10:52:09] 2026-03-08 09:51:34,495 | INFO     | [job] control thread has finished
[2026-03-08 10:52:09] 2026-03-08 09:51:34,501 | INFO     | [job] create_data_payload thread has finished
[2026-03-08 10:52:09] 2026-03-08 09:51:34,585 | INFO     | [payload] validate_pre thread has finished
[2026-03-08 10:52:09] 2026-03-08 09:51:37,361 | INFO     | [data] queue_monitor thread has finished
[2026-03-08 10:52:09] 2026-03-08 09:52:02,190 | INFO     | PID=699395 has CPU usage=0.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-03-08 10:52:09] 2026-03-08 09:52:02,191 | INFO     | found 0 job(s) in 20 queues
[2026-03-08 10:52:09] 2026-03-08 09:52:02,191 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-08 10:52:09] 2026-03-08 09:52:02,191 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-08 10:52:09] 2026-03-08 09:52:02,606 | INFO     | [monitor] cgroup control has ended
[2026-03-08 10:52:09] 2026-03-08 09:52:03,815 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140601283954496)>', '<ExcThread(monitor, started 140600485590784)>']
[2026-03-08 10:52:09] 2026-03-08 09:52:04,197 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-08 10:52:09] 2026-03-08 09:52:04,197 | INFO     | [monitor] control thread has ended
[2026-03-08 10:52:09] 2026-03-08 09:52:08,841 | INFO     | all workflow threads have been joined
[2026-03-08 10:52:09] 2026-03-08 09:52:08,841 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-08 10:52:09] 2026-03-08 09:52:08,841 | INFO     | traces error code: 0
[2026-03-08 10:52:09] 2026-03-08 09:52:08,841 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-08 10:52:09] 2026-03-08 09:52:08,920 [wrapper] ==== pilot stdout END ====
[2026-03-08 10:52:09] 2026-03-08 09:52:08,925 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-08 10:52:09] 2026-03-08 09:52:08,929 [wrapper] pilotpid: 699395
[2026-03-08 10:52:09] 2026-03-08 09:52:08,933 [wrapper] Pilot exit status: 0
[2026-03-08 10:52:09] 2026-03-08 09:52:08,946 [wrapper] pandaids: 7039268256
[2026-03-08 10:52:09] 2026-03-08 09:52:08,967 [wrapper] cleanup supervisor_pilot  699401 699396
[2026-03-08 10:52:09] 2026-03-08 09:52:08,971 [wrapper] Test setup, not cleaning
[2026-03-08 10:52:09] 2026-03-08 09:52:08,976 [wrapper] apfmon messages muted
[2026-03-08 10:52:09] 2026-03-08 09:52:08,980 [wrapper] ==== wrapper stdout END ====
[2026-03-08 10:52:09] 2026-03-08 09:52:08,984 [wrapper] ==== wrapper stderr END ====
[2026-03-08 10:52:09]  *** Error codes and diagnostics ***
[2026-03-08 10:52:09]     "exeErrorCode": 0,
[2026-03-08 10:52:09]     "exeErrorDiag": "",
[2026-03-08 10:52:09]     "pilotErrorCode": 1305,
[2026-03-08 10:52:09]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: EVNTtoHITS got a SIGSEGV signal (exit code 139); Possible memory leak: 'pss' slope: 7452.54 KB/s",
[2026-03-08 10:52:09]  *** Listing of results directory ***
[2026-03-08 10:52:09] total 435248
[2026-03-08 10:52:09] -rw-r--r-- 1 boinc boinc    584627 Mar  7 22:34 pilot3.tar.gz
[2026-03-08 10:52:09] -rwx------ 1 boinc boinc     36322 Mar  7 22:35 runpilot2-wrapper.sh
[2026-03-08 10:52:09] -rw-r--r-- 1 boinc boinc      5111 Mar  7 22:37 queuedata.json
[2026-03-08 10:52:09] -rw-r--r-- 1 boinc boinc       100 Mar  8 10:44 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-08 10:52:09] -rwxr-xr-x 1 boinc boinc      7986 Mar  8 10:44 run_atlas
[2026-03-08 10:52:09] -rw-r--r-- 1 boinc boinc       105 Mar  8 10:44 job.xml
[2026-03-08 10:52:09] -rw-r--r-- 2 boinc boinc 441243673 Mar  8 10:44 EVNT.46701403._000397.pool.root.1
[2026-03-08 10:52:09] drwxrwx--x 2 boinc boinc      4096 Mar  8 10:44 shared
[2026-03-08 10:52:09] -rw-r--r-- 2 boinc boinc    597954 Mar  8 10:44 input.tar.gz
[2026-03-08 10:52:09] -rw-r--r-- 2 boinc boinc     15845 Mar  8 10:44 start_atlas.sh
[2026-03-08 10:52:09] -rw-r--r-- 1 boinc boinc         0 Mar  8 10:44 boinc_setup_complete
[2026-03-08 10:52:09] -rw-r--r-- 1 boinc boinc      6377 Mar  8 10:44 init_data.xml
[2026-03-08 10:52:09] -rw-r--r-- 1 boinc boinc         0 Mar  8 10:44 boinc_lockfile
[2026-03-08 10:52:09] -rw-r--r-- 1 boinc boinc      2564 Mar  8 10:44 pandaJob.out
[2026-03-08 10:52:09] -rw------- 1 boinc boinc    999169 Mar  8 10:44 agis_schedconf.cvmfs.json
[2026-03-08 10:52:09] -rw------- 1 boinc boinc   1521291 Mar  8 10:44 agis_ddmendpoints.agis.ALL.json
[2026-03-08 10:52:09] -rw------- 1 boinc boinc       428 Mar  8 10:45 workernode_map.json
[2026-03-08 10:52:09] drwx------ 5 boinc boinc      4096 Mar  8 10:45 pilot3
[2026-03-08 10:52:09] -rw-r--r-- 1 boinc boinc       526 Mar  8 10:49 boinc_task_state.xml
[2026-03-08 10:52:09] -rw------- 1 boinc boinc      1004 Mar  8 10:49 memory_monitor_summary.json
[2026-03-08 10:52:09] -rw------- 1 boinc boinc    153069 Mar  8 10:49 log.48955006._019847.job.log.tgz.1
[2026-03-08 10:52:09] -rw------- 1 boinc boinc      7214 Mar  8 10:51 heartbeat.json
[2026-03-08 10:52:09] -rw-r--r-- 1 boinc boinc      8192 Mar  8 10:51 boinc_mmap_file
[2026-03-08 10:52:09] -rw-r--r-- 1 boinc boinc        24 Mar  8 10:51 wrapper_checkpoint.txt
[2026-03-08 10:52:09] -rw------- 1 boinc boinc        95 Mar  8 10:52 pilot_heartbeat.json
[2026-03-08 10:52:09] -rw------- 1 boinc boinc      4747 Mar  8 10:52 pilotlog.txt
[2026-03-08 10:52:09] -rw------- 1 boinc boinc    110948 Mar  8 10:52 log.48955006._019847.job.log.1
[2026-03-08 10:52:09] -rw------- 1 boinc boinc       188 Mar  8 10:52 output.list
[2026-03-08 10:52:09] -rw-r--r-- 1 boinc boinc       620 Mar  8 10:52 runtime_log
[2026-03-08 10:52:09] -rw------- 1 boinc boinc    286720 Mar  8 10:52 result.tar.gz
[2026-03-08 10:52:09] -rw-r--r-- 1 boinc boinc      8748 Mar  8 10:52 runtime_log.err
[2026-03-08 10:52:09] -rw------- 1 boinc boinc       650 Mar  8 10:52 Z1EODmZUEJ9nsSi4ap6QjLDmwznN0nGgGQJmIVkRDmU8WLDmQ2BsLm.diag
[2026-03-08 10:52:09] -rw-r--r-- 1 boinc boinc      6234 Mar  8 10:52 stderr.txt
[2026-03-08 10:52:09] No HITS result produced
[2026-03-08 10:52:09]  *** Contents of shared directory: ***
[2026-03-08 10:52:09] total 431788
[2026-03-08 10:52:09] -rw-r--r-- 2 boinc boinc 441243673 Mar  8 10:44 ATLAS.root_0
[2026-03-08 10:52:09] -rw-r--r-- 2 boinc boinc    597954 Mar  8 10:44 input.tar.gz
[2026-03-08 10:52:09] -rw-r--r-- 2 boinc boinc     15845 Mar  8 10:44 start_atlas.sh
[2026-03-08 10:52:09] -rw------- 1 boinc boinc    286720 Mar  8 10:52 result.tar.gz
10:52:10 (695283): run_atlas exited; CPU time 107.597733
10:52:10 (695283): called boinc_finish(0)

</stderr_txt>
]]>

©2026 CERN