Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
00:51:14 (3581606): wrapper (7.7.26015): starting
00:51:14 (3581606): wrapper: running run_atlas (--nthreads 4)
[2026-03-10 00:51:14] Arguments: --nthreads 4
[2026-03-10 00:51:14] Threads: 4
[2026-03-10 00:51:14] Checking for CVMFS
[2026-03-10 00:51:14] No cvmfs_config command found, will try listing directly
[2026-03-10 00:51:14] CVMFS is ok
[2026-03-10 00:51:14] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-10 00:51:14] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-10 00:51:14] Further information can be found at the LHC@home message board.
[2026-03-10 00:51:14] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-10 00:51:14] Checking for apptainer binary...
[2026-03-10 00:51:14] which: no apptainer in ((null))
[2026-03-10 00:51:14] apptainer is not installed, using version from CVMFS
[2026-03-10 00:51:14] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-10 00:51:14] WARNING: Environment variable TMPDIR already has value [/var/lib/boinc/var/slot24/slots/5/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut14.grid.cesnet.cz
[2026-03-10 00:51:14] apptainer works
[2026-03-10 00:51:14] Set ATHENA_PROC_NUMBER=4
[2026-03-10 00:51:14] Set ATHENA_CORE_NUMBER=4
[2026-03-10 00:51:14] Starting ATLAS job with PandaID=7045745268
[2026-03-10 00:51:14] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc/var/slot24/slots/5 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-10 04:47:04]  *** The last 200 lines of the pilot log: ***
[2026-03-10 04:47:05] 2026-03-10 03:45:56,512 | INFO     | maximum number of monitored processes: 6
[2026-03-10 04:47:05] 2026-03-10 03:45:57,559 | INFO     | job 7045745268 has state=finished
[2026-03-10 04:47:05] 2026-03-10 03:45:57,560 | INFO     | preparing for final server update for job 7045745268 in state='finished'
[2026-03-10 04:47:05] 2026-03-10 03:45:57,560 | INFO     | reading metadata from: /var/lib/boinc/var/slot24/slots/5/PanDA_Pilot-7045745268/jobReport.json
[2026-03-10 04:47:05] 2026-03-10 03:45:57,562 | INFO     | added worker_node to metadata from /var/lib/boinc/var/slot24/slots/5/workernode_map.json
[2026-03-10 04:47:05] 2026-03-10 03:45:57,563 | INFO     | this job has now completed (state=finished)
[2026-03-10 04:47:05] 2026-03-10 03:45:57,563 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-03-10 04:47:05] 2026-03-10 03:45:57,563 | INFO     | log transfer has been attempted: DONE
[2026-03-10 04:47:05] 2026-03-10 03:45:57,563 | INFO     | job 7045745268 has finished - writing final server update
[2026-03-10 04:47:05] 2026-03-10 03:45:57,563 | WARNING  | failed to read HTCondor job classAd: [Errno 2] No such file or directory: '/scratch/condor/execute/dir_2599185/.job.ad'
[2026-03-10 04:47:05] 2026-03-10 03:45:57,564 | INFO     | total number of processed events: 400 (read)
[2026-03-10 04:47:05] 2026-03-10 03:45:57,588 | INFO     | using path: /var/lib/boinc/var/slot24/slots/5/PanDA_Pilot-7045745268/memory_monitor_summary.json (trf name=prmon)
[2026-03-10 04:47:05] 2026-03-10 03:45:57,588 | INFO     | extracted standard info from prmon json
[2026-03-10 04:47:05] 2026-03-10 03:45:57,588 | INFO     | extracted standard memory fields from prmon json
[2026-03-10 04:47:05] 2026-03-10 03:45:57,588 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-03-10 04:47:05] 2026-03-10 03:45:57,589 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-03-10 04:47:05] 2026-03-10 03:45:57,589 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-03-10 04:47:05] 2026-03-10 03:45:57,593 | INFO     | fitting pss+swap vs Time
[2026-03-10 04:47:05] 2026-03-10 03:45:57,593 | INFO     | sum of square deviations: 3772712597.5
[2026-03-10 04:47:05] 2026-03-10 03:45:57,595 | INFO     | sum of deviations: 24983879067.999992
[2026-03-10 04:47:05] 2026-03-10 03:45:57,595 | INFO     | mean x: 1773107307.5
[2026-03-10 04:47:05] 2026-03-10 03:45:57,595 | INFO     | mean y: 2334532.5739130434
[2026-03-10 04:47:05] 2026-03-10 03:45:57,595 | INFO     | intersect: -11739640876.451946
[2026-03-10 04:47:05] 2026-03-10 03:45:57,595 | INFO     | chi2: 1.2959095561630591
[2026-03-10 04:47:05] 2026-03-10 03:45:57,596 | INFO     | sum of square deviations: 3531973200.0
[2026-03-10 04:47:05] 2026-03-10 03:45:57,597 | INFO     | sum of deviations: 24260421081.000008
[2026-03-10 04:47:05] 2026-03-10 03:45:57,597 | INFO     | mean x: 1773107155.0
[2026-03-10 04:47:05] 2026-03-10 03:45:57,597 | INFO     | mean y: 2334074.208888889
[2026-03-10 04:47:05] 2026-03-10 03:45:57,597 | INFO     | intersect: -12176786141.66193
[2026-03-10 04:47:05] 2026-03-10 03:45:57,598 | INFO     | chi2: 1.2965190485962825
[2026-03-10 04:47:05] 2026-03-10 03:45:57,598 | INFO     | current chi2=1.2965190485962825 (change=-0.0470320193507934 %)
[2026-03-10 04:47:05] 2026-03-10 03:45:57,598 | INFO     | right removable region: 224
[2026-03-10 04:47:05] 2026-03-10 03:45:57,598 | INFO     | sum of square deviations: 3531973200.0
[2026-03-10 04:47:05] 2026-03-10 03:45:57,600 | INFO     | sum of deviations: -3064312796.0000005
[2026-03-10 04:47:05] 2026-03-10 03:45:57,600 | INFO     | mean x: 1773107460.0
[2026-03-10 04:47:05] 2026-03-10 03:45:57,600 | INFO     | mean y: 2352089.351111111
[2026-03-10 04:47:05] 2026-03-10 03:45:57,600 | INFO     | intersect: 1540686490.7449436
[2026-03-10 04:47:05] 2026-03-10 03:45:57,601 | INFO     | chi2: 0.01817158831454216
[2026-03-10 04:47:05] 2026-03-10 03:45:57,601 | INFO     | current chi2=0.01817158831454216 (change=98.59777341496387 %)
[2026-03-10 04:47:05] 2026-03-10 03:45:57,601 | INFO     | sum of square deviations: 3301699115.0
[2026-03-10 04:47:05] 2026-03-10 03:45:57,602 | INFO     | sum of deviations: -2051894240.4999995
[2026-03-10 04:47:05] 2026-03-10 03:45:57,603 | INFO     | mean x: 1773107612.5
[2026-03-10 04:47:05] 2026-03-10 03:45:57,603 | INFO     | mean y: 2351404.559090909
[2026-03-10 04:47:05] 2026-03-10 03:45:57,603 | INFO     | intersect: 1104277767.6690907
[2026-03-10 04:47:05] 2026-03-10 03:45:57,603 | INFO     | chi2: 0.014278647597023457
[2026-03-10 04:47:05] 2026-03-10 03:45:57,603 | INFO     | current chi2=0.014278647597023457 (change=21.423227568958854 %)
[2026-03-10 04:47:05] 2026-03-10 03:45:57,603 | INFO     | left removable region: 20
[2026-03-10 04:47:05] 2026-03-10 03:45:57,604 | INFO     | sum of square deviations: 2632440055.0
[2026-03-10 04:47:05] 2026-03-10 03:45:57,605 | INFO     | sum of deviations: 2277000893.4999995
[2026-03-10 04:47:05] 2026-03-10 03:45:57,605 | INFO     | mean x: 1773107734.5
[2026-03-10 04:47:05] 2026-03-10 03:45:57,607 | INFO     | mean y: 2347939.2598039214
[2026-03-10 04:47:05] 2026-03-10 03:45:57,607 | INFO     | intersect: -1531350003.095909
[2026-03-10 04:47:05] 2026-03-10 03:45:57,607 | INFO     | chi2: 0.00515941844339269
[2026-03-10 04:47:05] 2026-03-10 03:45:57,607 | INFO     | current memory leak: 0.86 B/s (using 204 data points, chi2=0.01)
[2026-03-10 04:47:05] 2026-03-10 03:45:57,608 | INFO     | could have reported an average CPU frequency of 2713 MHz (11 samples)
[2026-03-10 04:47:05] 2026-03-10 03:45:57,608 | INFO     | ..............................
[2026-03-10 04:47:05] 2026-03-10 03:45:57,608 | INFO     | . Timing measurements:
[2026-03-10 04:47:05] 2026-03-10 03:45:57,608 | INFO     | . get job = 0 s
[2026-03-10 04:47:05] 2026-03-10 03:45:57,608 | INFO     | . initial setup = 8 s
[2026-03-10 04:47:05] 2026-03-10 03:45:57,608 | INFO     | . payload setup = 8 s
[2026-03-10 04:47:05] 2026-03-10 03:45:57,608 | INFO     | . stage-in = 0 s
[2026-03-10 04:47:05] 2026-03-10 03:45:57,608 | INFO     | . payload execution = 14031 s
[2026-03-10 04:47:05] 2026-03-10 03:45:57,608 | INFO     | . stage-out = 1 s
[2026-03-10 04:47:05] 2026-03-10 03:45:57,609 | INFO     | . log creation = 0 s
[2026-03-10 04:47:05] 2026-03-10 03:45:57,609 | INFO     | ..............................
[2026-03-10 04:47:05] 2026-03-10 03:45:57,696 | INFO     | 
[2026-03-10 04:47:05] 2026-03-10 03:45:57,697 | INFO     | job summary report
[2026-03-10 04:47:05] 2026-03-10 03:45:57,697 | INFO     | --------------------------------------------------
[2026-03-10 04:47:05] 2026-03-10 03:45:57,697 | INFO     | PanDA job id: 7045745268
[2026-03-10 04:47:05] 2026-03-10 03:45:57,699 | INFO     | task id: 48998022
[2026-03-10 04:47:05] 2026-03-10 03:45:57,700 | INFO     | errors: (none)
[2026-03-10 04:47:05] 2026-03-10 03:45:57,700 | INFO     | status: LOG_TRANSFER = DONE 
[2026-03-10 04:47:05] 2026-03-10 03:45:57,700 | INFO     | pilot state: finished 
[2026-03-10 04:47:05] 2026-03-10 03:45:57,700 | INFO     | transexitcode: 0
[2026-03-10 04:47:05] 2026-03-10 03:45:57,700 | INFO     | exeerrorcode: 0
[2026-03-10 04:47:05] 2026-03-10 03:45:57,700 | INFO     | exeerrordiag: 
[2026-03-10 04:47:05] 2026-03-10 03:45:57,700 | INFO     | exitcode: 0
[2026-03-10 04:47:05] 2026-03-10 03:45:57,700 | INFO     | exitmsg: OK
[2026-03-10 04:47:05] 2026-03-10 03:45:57,700 | INFO     | cpuconsumptiontime: 52366 s
[2026-03-10 04:47:05] 2026-03-10 03:45:57,700 | INFO     | nevents: 400
[2026-03-10 04:47:05] 2026-03-10 03:45:57,700 | INFO     | neventsw: 0
[2026-03-10 04:47:05] 2026-03-10 03:45:57,700 | INFO     | pid: 3591076
[2026-03-10 04:47:05] 2026-03-10 03:45:57,700 | INFO     | pgrp: 3591076
[2026-03-10 04:47:05] 2026-03-10 03:45:57,701 | INFO     | corecount: 4
[2026-03-10 04:47:05] 2026-03-10 03:45:57,701 | INFO     | event service: False
[2026-03-10 04:47:05] 2026-03-10 03:45:57,701 | INFO     | sizes: {0: 2280030, 1: 2280320, 11: 2280320, 14044: 2311354, 14045: 2320374, 14049: 2320430, 14051: 2320752}
[2026-03-10 04:47:05] 2026-03-10 03:45:57,701 | INFO     | --------------------------------------------------
[2026-03-10 04:47:05] 2026-03-10 03:45:57,701 | INFO     | 
[2026-03-10 04:47:05] 2026-03-10 03:45:57,701 | INFO     | executing command: ls -lF /var/lib/boinc/var/slot24/slots/5
[2026-03-10 04:47:05] 2026-03-10 03:45:57,733 | INFO     | queue jobs had 0 job(s) [purged]
[2026-03-10 04:47:05] 2026-03-10 03:45:57,733 | INFO     | queue payloads had 0 job(s) [purged]
[2026-03-10 04:47:05] 2026-03-10 03:45:57,733 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-10 04:47:05] 2026-03-10 03:45:57,733 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-10 04:47:05] 2026-03-10 03:45:57,733 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-10 04:47:05] 2026-03-10 03:45:57,733 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-10 04:47:05] 2026-03-10 03:45:57,733 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-10 04:47:05] 2026-03-10 03:45:57,734 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-10 04:47:05] 2026-03-10 03:45:57,734 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-10 04:47:05] 2026-03-10 03:45:57,734 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-10 04:47:05] 2026-03-10 03:45:57,734 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-10 04:47:05] 2026-03-10 03:45:57,734 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-10 04:47:05] 2026-03-10 03:45:57,734 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-10 04:47:05] 2026-03-10 03:45:57,734 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-10 04:47:05] 2026-03-10 03:45:57,734 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-10 04:47:05] 2026-03-10 03:45:57,734 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-10 04:47:05] 2026-03-10 03:45:57,734 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-10 04:47:05] 2026-03-10 03:45:57,735 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-10 04:47:05] 2026-03-10 03:45:57,735 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-10 04:47:05] 2026-03-10 03:45:57,735 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-10 04:47:05] 2026-03-10 03:45:57,735 | INFO     | job 7045745268 has completed (purged errors)
[2026-03-10 04:47:05] 2026-03-10 03:45:57,735 | INFO     | overall cleanup function is called
[2026-03-10 04:47:05] 2026-03-10 03:45:58,744 | INFO     | --- collectZombieJob: --- 10, [3591076]
[2026-03-10 04:47:05] 2026-03-10 03:45:58,745 | INFO     | zombie collector waiting for pid 3591076
[2026-03-10 04:47:05] 2026-03-10 03:45:58,745 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-10 04:47:05] 2026-03-10 03:45:58,745 | INFO     | collected zombie processes
[2026-03-10 04:47:05] 2026-03-10 03:45:58,745 | INFO     | will attempt to kill all subprocesses of pid=3591076
[2026-03-10 04:47:05] 2026-03-10 03:45:59,531 | INFO     | process IDs to be killed: [3591076] (in reverse order)
[2026-03-10 04:47:05] 2026-03-10 03:45:59,853 | WARNING  | found no corresponding commands to process id(s)
[2026-03-10 04:47:05] 2026-03-10 03:45:59,854 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-10 04:47:05] 2026-03-10 03:45:59,880 | INFO     | did not find any defunct processes belonging to 3591076
[2026-03-10 04:47:05] 2026-03-10 03:45:59,902 | INFO     | did not find any defunct processes belonging to 3591076
[2026-03-10 04:47:05] 2026-03-10 03:45:59,903 | INFO     | ready for new job
[2026-03-10 04:47:05] 2026-03-10 03:45:59,903 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-10 04:47:05] 2026-03-10 03:45:59,905 | INFO     | **************************************
[2026-03-10 04:47:05] 2026-03-10 03:45:59,906 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-03-10 04:47:05] 2026-03-10 03:45:59,906 | INFO     | **************************************
[2026-03-10 04:47:05] 2026-03-10 03:45:59,906 | INFO     | 
[2026-03-10 04:47:05] 2026-03-10 03:45:59,914 | INFO     | architecture information:
[2026-03-10 04:47:05] 2026-03-10 03:45:59,915 | INFO     | executing command: cat /etc/os-release
[2026-03-10 04:47:05] 2026-03-10 03:45:59,937 | INFO     | cat /etc/os-release:
[2026-03-10 04:47:05] NAME="CentOS Linux"
[2026-03-10 04:47:05] VERSION="7 (Core)"
[2026-03-10 04:47:05] ID="centos"
[2026-03-10 04:47:05] ID_LIKE="rhel fedora"
[2026-03-10 04:47:05] VERSION_ID="7"
[2026-03-10 04:47:05] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-10 04:47:05] ANSI_COLOR="0;31"
[2026-03-10 04:47:05] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-10 04:47:05] HOME_URL="https://www.centos.org/"
[2026-03-10 04:47:05] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-10 04:47:05] 
[2026-03-10 04:47:05] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-10 04:47:05] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-10 04:47:05] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-10 04:47:05] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-10 04:47:05] 
[2026-03-10 04:47:05] 2026-03-10 03:45:59,938 | INFO     | **************************************
[2026-03-10 04:47:05] 2026-03-10 03:46:00,440 | INFO     | executing command: df -mP /var/lib/boinc/var/slot24/slots/5
[2026-03-10 04:47:05] 2026-03-10 03:46:00,475 | INFO     | sufficient remaining disk space (57118031872 B)
[2026-03-10 04:47:05] 2026-03-10 03:46:00,475 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-10 04:47:05] 2026-03-10 03:46:00,476 | INFO     | current server update state: UPDATING_FINAL
[2026-03-10 04:47:05] 2026-03-10 03:46:00,476 | INFO     | update_server=False
[2026-03-10 04:47:05] 2026-03-10 03:46:00,476 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-10 04:47:05] 2026-03-10 03:46:00,476 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-10 04:47:05] 2026-03-10 03:46:00,476 | INFO     | aborting loop
[2026-03-10 04:47:05] 2026-03-10 03:46:00,503 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-10 04:47:05] 2026-03-10 03:46:01,365 | INFO     | all data control threads have been joined
[2026-03-10 04:47:05] 2026-03-10 03:46:01,439 | INFO     | all job control threads have been joined
[2026-03-10 04:47:05] 2026-03-10 03:46:01,480 | INFO     | [job] retrieve thread has finished
[2026-03-10 04:47:05] 2026-03-10 03:46:01,481 | INFO     | [job] job monitor thread has finished
[2026-03-10 04:47:05] 2026-03-10 03:46:01,580 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-10 04:47:05] 2026-03-10 03:46:01,774 | INFO     | [payload] validate_post thread has finished
[2026-03-10 04:47:05] 2026-03-10 03:46:01,954 | INFO     | all payload control threads have been joined
[2026-03-10 04:47:05] 2026-03-10 03:46:02,011 | INFO     | [job] validate thread has finished
[2026-03-10 04:47:05] 2026-03-10 03:46:02,304 | INFO     | [data] copytool_in thread has finished
[2026-03-10 04:47:05] 2026-03-10 03:46:02,328 | INFO     | [payload] execute_payloads thread has finished
[2026-03-10 04:47:05] 2026-03-10 03:46:02,370 | INFO     | [data] control thread has finished
[2026-03-10 04:47:05] 2026-03-10 03:46:02,403 | INFO     | [payload] failed_post thread has finished
[2026-03-10 04:47:05] 2026-03-10 03:46:02,444 | INFO     | [job] control thread has finished
[2026-03-10 04:47:05] 2026-03-10 03:46:02,508 | INFO     | [data] copytool_out thread has finished
[2026-03-10 04:47:05] 2026-03-10 03:46:02,609 | INFO     | [payload] validate_pre thread has finished
[2026-03-10 04:47:05] 2026-03-10 03:46:02,705 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-10 04:47:05] 2026-03-10 03:46:02,706 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-10 04:47:05] 2026-03-10 03:46:02,769 | INFO     | [job] create_data_payload thread has finished
[2026-03-10 04:47:05] 2026-03-10 03:46:02,959 | INFO     | [payload] control thread has finished
[2026-03-10 04:47:05] 2026-03-10 03:46:03,712 | INFO     | [job] queue monitor thread has finished
[2026-03-10 04:47:05] 2026-03-10 03:46:05,585 | INFO     | [data] queue_monitor thread has finished
[2026-03-10 04:47:05] 2026-03-10 03:46:30,005 | INFO     | PID=3585626 has CPU usage=10.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2026-03-10 04:47:05] 2026-03-10 03:46:30,006 | INFO     | .. there are 31 such processes running
[2026-03-10 04:47:05] 2026-03-10 03:46:30,006 | INFO     | found 0 job(s) in 20 queues
[2026-03-10 04:47:05] 2026-03-10 03:46:30,006 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-10 04:47:05] 2026-03-10 03:46:30,006 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-10 04:47:05] 2026-03-10 03:46:59,055 | INFO     | [monitor] cgroup control has ended
[2026-03-10 04:47:05] 2026-03-10 03:46:59,385 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23386844731200)>', '<ExcThread(monitor, started 23386605758208)>']
[2026-03-10 04:47:05] 2026-03-10 03:47:00,161 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-10 04:47:05] 2026-03-10 03:47:00,162 | INFO     | [monitor] control thread has ended
[2026-03-10 04:47:05] 2026-03-10 03:47:04,410 | INFO     | all workflow threads have been joined
[2026-03-10 04:47:05] 2026-03-10 03:47:04,412 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-10 04:47:05] 2026-03-10 03:47:04,413 | INFO     | traces error code: 0
[2026-03-10 04:47:05] 2026-03-10 03:47:04,413 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-10 04:47:05] 2026-03-10 03:47:04,565 [wrapper] ==== pilot stdout END ====
[2026-03-10 04:47:05] 2026-03-10 03:47:04,570 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-10 04:47:05] 2026-03-10 03:47:04,574 [wrapper] pilotpid: 3585626
[2026-03-10 04:47:05] 2026-03-10 03:47:04,578 [wrapper] Pilot exit status: 0
[2026-03-10 04:47:05] 2026-03-10 03:47:04,596 [wrapper] pandaids: 7045745268
[2026-03-10 04:47:05] 2026-03-10 03:47:04,770 [wrapper] cleanup supervisor_pilot 4087806 3585627
[2026-03-10 04:47:05] 2026-03-10 03:47:04,775 [wrapper] Test setup, not cleaning
[2026-03-10 04:47:05] 2026-03-10 03:47:04,780 [wrapper] apfmon messages muted
[2026-03-10 04:47:05] 2026-03-10 03:47:04,784 [wrapper] ==== wrapper stdout END ====
[2026-03-10 04:47:05] 2026-03-10 03:47:04,788 [wrapper] ==== wrapper stderr END ====
[2026-03-10 04:47:05]  *** Error codes and diagnostics ***
[2026-03-10 04:47:05]     "exeErrorCode": 0,
[2026-03-10 04:47:05]     "exeErrorDiag": "",
[2026-03-10 04:47:05]     "pilotErrorCode": 0,
[2026-03-10 04:47:05]     "pilotErrorDiag": "",
[2026-03-10 04:47:05]  *** Listing of results directory ***
[2026-03-10 04:47:05] total 563448
[2026-03-10 04:47:05] -rw-r--r--. 1 boinc boinc    584627 Mar  8 02:40 pilot3.tar.gz
[2026-03-10 04:47:05] -rw-r--r--. 1 boinc boinc      5111 Mar  8 02:42 queuedata.json
[2026-03-10 04:47:05] -rwx------. 1 boinc boinc     36322 Mar  8 02:43 runpilot2-wrapper.sh
[2026-03-10 04:47:05] -rw-r--r--. 1 boinc boinc       100 Mar 10 00:51 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-10 04:47:05] -rwxr-xr-x. 1 boinc boinc      7986 Mar 10 00:51 run_atlas
[2026-03-10 04:47:05] -rw-r--r--. 1 boinc boinc       105 Mar 10 00:51 job.xml
[2026-03-10 04:47:05] -rw-r--r--. 1 boinc boinc      6617 Mar 10 00:51 init_data.xml
[2026-03-10 04:47:05] -rw-r--r--. 2 boinc boinc 323873059 Mar 10 00:51 EVNT.48998020._000009.pool.root.1
[2026-03-10 04:47:05] -rw-r--r--. 2 boinc boinc    597960 Mar 10 00:51 input.tar.gz
[2026-03-10 04:47:05] -rw-r--r--. 2 boinc boinc     15845 Mar 10 00:51 start_atlas.sh
[2026-03-10 04:47:05] drwxrwx--x. 2 boinc boinc      4096 Mar 10 00:51 shared
[2026-03-10 04:47:05] -rw-r--r--. 1 boinc boinc         0 Mar 10 00:51 boinc_lockfile
[2026-03-10 04:47:05] -rw-r--r--. 1 boinc boinc      2608 Mar 10 00:51 pandaJob.out
[2026-03-10 04:47:05] -rw-------. 1 boinc boinc   1002738 Mar 10 00:51 agis_schedconf.cvmfs.json
[2026-03-10 04:47:05] -rw-------. 1 boinc boinc       442 Mar 10 00:51 workernode_map.json
[2026-03-10 04:47:05] drwx------. 5 boinc boinc      4096 Mar 10 00:51 pilot3
[2026-03-10 04:47:05] -rw-------. 1 boinc boinc 244491176 Mar 10 04:45 HITS.48998022._000224.pool.root.1
[2026-03-10 04:47:05] -rw-r--r--. 1 boinc boinc       530 Mar 10 04:45 boinc_task_state.xml
[2026-03-10 04:47:05] -rw-------. 1 boinc boinc        95 Mar 10 04:45 pilot_heartbeat.json
[2026-03-10 04:47:05] -rw-------. 1 boinc boinc      1024 Mar 10 04:45 memory_monitor_summary.json
[2026-03-10 04:47:05] -rw-------. 1 boinc boinc   1511578 Mar 10 04:45 agis_ddmendpoints.agis.ALL.json
[2026-03-10 04:47:05] -rw-------. 1 boinc boinc    411907 Mar 10 04:45 log.48998022._000224.job.log.tgz.1
[2026-03-10 04:47:05] -rw-------. 1 boinc boinc      6343 Mar 10 04:45 heartbeat.json
[2026-03-10 04:47:05] -rw-r--r--. 1 boinc boinc        28 Mar 10 04:46 wrapper_checkpoint.txt
[2026-03-10 04:47:05] -rw-r--r--. 1 boinc boinc      8192 Mar 10 04:46 boinc_mmap_file
[2026-03-10 04:47:05] -rw-------. 1 boinc boinc      4830 Mar 10 04:47 pilotlog.txt
[2026-03-10 04:47:05] -rw-------. 1 boinc boinc   1923535 Mar 10 04:47 log.48998022._000224.job.log.1
[2026-03-10 04:47:05] -rw-------. 1 boinc boinc       357 Mar 10 04:47 output.list
[2026-03-10 04:47:05] -rw-r--r--. 1 boinc boinc       620 Mar 10 04:47 runtime_log
[2026-03-10 04:47:05] -rw-------. 1 boinc boinc   2355200 Mar 10 04:47 result.tar.gz
[2026-03-10 04:47:05] -rw-------. 1 boinc boinc       666 Mar 10 04:47 zrCNDmdMIJ9n9Rq4apOajLDm4fhM0noT9bVooX4SDmrNVLDmvmHjCn.diag
[2026-03-10 04:47:05] -rw-r--r--. 1 boinc boinc      9205 Mar 10 04:47 runtime_log.err
[2026-03-10 04:47:05] -rw-r--r--. 1 boinc boinc     21130 Mar 10 04:47 stderr.txt
[2026-03-10 04:47:05] HITS file was successfully produced:
[2026-03-10 04:47:05] -rw-------. 1 boinc boinc 244491176 Mar 10 04:45 shared/HITS.pool.root.1
[2026-03-10 04:47:05]  *** Contents of shared directory: ***
[2026-03-10 04:47:05] total 557956
[2026-03-10 04:47:05] -rw-r--r--. 2 boinc boinc 323873059 Mar 10 00:51 ATLAS.root_0
[2026-03-10 04:47:05] -rw-r--r--. 2 boinc boinc    597960 Mar 10 00:51 input.tar.gz
[2026-03-10 04:47:05] -rw-r--r--. 2 boinc boinc     15845 Mar 10 00:51 start_atlas.sh
[2026-03-10 04:47:05] -rw-------. 1 boinc boinc 244491176 Mar 10 04:45 HITS.pool.root.1
[2026-03-10 04:47:05] -rw-------. 1 boinc boinc   2355200 Mar 10 04:47 result.tar.gz
04:47:06 (3581606): run_atlas exited; CPU time 53169.230364
04:47:06 (3581606): called boinc_finish(0)

</stderr_txt>
]]>

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