Stderr output

<core_client_version>8.2.8</core_client_version>
<![CDATA[
<stderr_txt>
04:07:35 (19317): wrapper (7.7.26015): starting
04:07:35 (19317): wrapper: running run_atlas (--nthreads 8)
[2026-03-08 04:07:35] Arguments: --nthreads 8
[2026-03-08 04:07:35] Threads: 8
[2026-03-08 04:07:35] Checking for CVMFS
[2026-03-08 04:07:36] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-08 04:07:36] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-08 04:07:36] Running cvmfs_config stat atlas.cern.ch
[2026-03-08 04:07:36] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-08 04:07:36] 2.11.0.0 4168 211828 66960 157023 1 50 3286507 4096001 0 130560 3 3045780 99.423 7462239 298 http://cvmfs-stratum-one.cern.ch/cvmfs/atlas.cern.ch http://141.99.253.245:3128 1
[2026-03-08 04:07:36] CVMFS is ok
[2026-03-08 04:07:36] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-08 04:07:36] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-08 04:07:36] Further information can be found at the LHC@home message board.
[2026-03-08 04:07:36] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-08 04:07:36] Checking for apptainer binary...
[2026-03-08 04:07:36] /usr/bin/which: no apptainer in (/opt/ohpc/pub/libs/singularity/3.7.1/bin:/cm/shared/apps/slurm/current/sbin:/cm/shared/apps/slurm/current/bin:/home/mf493845/.local/bin:/home/mf493845/bin:/usr/local/bin:/usr/bin:/usr/local/sbin:/usr/sbin)
[2026-03-08 04:07:36] apptainer is not installed, using version from CVMFS
[2026-03-08 04:07:36] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-08 04:07:36] WARNING: Environment variable TMPDIR already has value [/tmp/job_11270684/atlas/pilot/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment hpc-node306
[2026-03-08 04:07:36] apptainer works
[2026-03-08 04:07:36] Set ATHENA_PROC_NUMBER=8
[2026-03-08 04:07:36] Set ATHENA_CORE_NUMBER=8
[2026-03-08 04:07:36] Starting ATLAS job with PandaID=7045392447
[2026-03-08 04:07:36] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/tmp/job_11270684/atlas/pilot/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-08 04:56:54]  *** The last 200 lines of the pilot log: ***
[2026-03-08 04:56:54]  inputddms=['NDGF-T1_DATADISK', 'CERN-PROD_DATADISK']
[2026-03-08 04:56:54]  is_altstaged=None
[2026-03-08 04:56:54]  is_tar=False
[2026-03-08 04:56:54]  lfn=log.48958610._001112.job.log.tgz.1
[2026-03-08 04:56:54]  mtime=0
[2026-03-08 04:56:54]  protocol_id=None
[2026-03-08 04:56:54]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2026-03-08 04:56:54]  replicas=None
[2026-03-08 04:56:54]  scope=mc23_13p6TeV
[2026-03-08 04:56:54]  status=None
[2026-03-08 04:56:54]  status_code=0
[2026-03-08 04:56:54]  storage_token=
[2026-03-08 04:56:54]  surl=/tmp/job_11270684/atlas/pilot/slots/0/PanDA_Pilot-7045392447/log.48958610._001112.job.log.tgz.1
[2026-03-08 04:56:54]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/1d/c9/log.48958610._001112.job.log.tgz.1
[2026-03-08 04:56:54]  workdir=None
[2026-03-08 04:56:54] ]
[2026-03-08 04:56:54] 2026-03-08 03:56:19,302 | INFO     | transferring file log.48958610._001112.job.log.tgz.1 from /tmp/job_11270684/atlas/pilot/slots/0/PanDA_Pilot-7045392447/log.48958610._001112.job.log.tgz.1 to /tmp/j
[2026-03-08 04:56:54] 2026-03-08 03:56:19,302 | INFO     | executing command: /usr/bin/env mv /tmp/job_11270684/atlas/pilot/slots/0/PanDA_Pilot-7045392447/log.48958610._001112.job.log.tgz.1 /tmp/job_11270684/atlas/pilot/sl
[2026-03-08 04:56:54] 2026-03-08 03:56:19,310 | INFO     | adding to output.list: log.48958610._001112.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/1d/c9/log.48958610._001112.job.log.tg
[2026-03-08 04:56:54] 2026-03-08 03:56:19,310 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-03-08 04:56:54] 2026-03-08 03:56:19,310 | INFO     | summary of transferred files:
[2026-03-08 04:56:54] 2026-03-08 03:56:19,310 | INFO     |  -- lfn=log.48958610._001112.job.log.tgz.1, status_code=0, status=transferred
[2026-03-08 04:56:54] 2026-03-08 03:56:19,311 | INFO     | stage-out finished correctly
[2026-03-08 04:56:54] 2026-03-08 03:56:20,038 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-03-08 04:56:54] 2026-03-08 03:56:20,226 | INFO     | time since job start (2917s) is within the limit (349056.0s)
[2026-03-08 04:56:54] 2026-03-08 03:56:21,818 | INFO     | job 7045392447 has state=finished
[2026-03-08 04:56:54] 2026-03-08 03:56:21,818 | INFO     | preparing for final server update for job 7045392447 in state='finished'
[2026-03-08 04:56:54] 2026-03-08 03:56:21,818 | INFO     | reading metadata from: /tmp/job_11270684/atlas/pilot/slots/0/PanDA_Pilot-7045392447/jobReport.json
[2026-03-08 04:56:54] 2026-03-08 03:56:21,820 | INFO     | added worker_node to metadata from /tmp/job_11270684/atlas/pilot/slots/0/workernode_map.json
[2026-03-08 04:56:54] 2026-03-08 03:56:21,820 | INFO     | this job has now completed (state=finished)
[2026-03-08 04:56:54] 2026-03-08 03:56:21,820 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-03-08 04:56:54] 2026-03-08 03:56:21,820 | INFO     | log transfer has been attempted: DONE
[2026-03-08 04:56:54] 2026-03-08 03:56:21,820 | INFO     | job 7045392447 has finished - writing final server update
[2026-03-08 04:56:54] 2026-03-08 03:56:21,820 | INFO     | total number of processed events: 400 (read)
[2026-03-08 04:56:54] 2026-03-08 03:56:21,837 | INFO     | using path: /tmp/job_11270684/atlas/pilot/slots/0/PanDA_Pilot-7045392447/memory_monitor_summary.json (trf name=prmon)
[2026-03-08 04:56:54] 2026-03-08 03:56:21,837 | INFO     | extracted standard info from prmon json
[2026-03-08 04:56:54] 2026-03-08 03:56:21,837 | INFO     | extracted standard memory fields from prmon json
[2026-03-08 04:56:54] 2026-03-08 03:56:21,837 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-03-08 04:56:54] 2026-03-08 03:56:21,837 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-03-08 04:56:54] 2026-03-08 03:56:21,837 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-03-08 04:56:54] 2026-03-08 03:56:21,838 | INFO     | fitting pss+swap vs Time
[2026-03-08 04:56:54] 2026-03-08 03:56:21,838 | INFO     | sum of square deviations: 21358540.0
[2026-03-08 04:56:54] 2026-03-08 03:56:21,838 | INFO     | sum of deviations: -411500388.00000006
[2026-03-08 04:56:54] 2026-03-08 03:56:21,838 | INFO     | mean x: 1772940804.0
[2026-03-08 04:56:54] 2026-03-08 03:56:21,838 | INFO     | mean y: 2592940.487804878
[2026-03-08 04:56:54] 2026-03-08 03:56:21,838 | INFO     | intersect: 34160631305.798916
[2026-03-08 04:56:54] 2026-03-08 03:56:21,838 | INFO     | chi2: 0.007037395950363445
[2026-03-08 04:56:54] 2026-03-08 03:56:21,838 | INFO     | current memory leak: -19.27 B/s (using 41 data points, chi2=0.01)
[2026-03-08 04:56:54] 2026-03-08 03:56:21,838 | INFO     | could have reported an average CPU frequency of 2380 MHz (5 samples)
[2026-03-08 04:56:54] 2026-03-08 03:56:21,838 | INFO     | ..............................
[2026-03-08 04:56:54] 2026-03-08 03:56:21,839 | INFO     | . Timing measurements:
[2026-03-08 04:56:54] 2026-03-08 03:56:21,839 | INFO     | . get job = 0 s
[2026-03-08 04:56:54] 2026-03-08 03:56:21,839 | INFO     | . initial setup = 2 s
[2026-03-08 04:56:54] 2026-03-08 03:56:21,839 | INFO     | . payload setup = 2 s
[2026-03-08 04:56:54] 2026-03-08 03:56:21,839 | INFO     | . stage-in = 0 s
[2026-03-08 04:56:54] 2026-03-08 03:56:21,839 | INFO     | . payload execution = 2898 s
[2026-03-08 04:56:54] 2026-03-08 03:56:21,839 | INFO     | . stage-out = 0 s
[2026-03-08 04:56:54] 2026-03-08 03:56:21,839 | INFO     | . log creation = 0 s
[2026-03-08 04:56:54] 2026-03-08 03:56:21,839 | INFO     | ..............................
[2026-03-08 04:56:54] 2026-03-08 03:56:21,993 | INFO     | 
[2026-03-08 04:56:54] 2026-03-08 03:56:21,994 | INFO     | job summary report
[2026-03-08 04:56:54] 2026-03-08 03:56:21,994 | INFO     | --------------------------------------------------
[2026-03-08 04:56:54] 2026-03-08 03:56:21,994 | INFO     | PanDA job id: 7045392447
[2026-03-08 04:56:54] 2026-03-08 03:56:21,994 | INFO     | task id: 48958610
[2026-03-08 04:56:54] 2026-03-08 03:56:21,994 | INFO     | errors: (none)
[2026-03-08 04:56:54] 2026-03-08 03:56:21,994 | INFO     | status: LOG_TRANSFER = DONE 
[2026-03-08 04:56:54] 2026-03-08 03:56:21,994 | INFO     | pilot state: finished 
[2026-03-08 04:56:54] 2026-03-08 03:56:21,994 | INFO     | transexitcode: 0
[2026-03-08 04:56:54] 2026-03-08 03:56:21,994 | INFO     | exeerrorcode: 0
[2026-03-08 04:56:54] 2026-03-08 03:56:21,994 | INFO     | exeerrordiag: 
[2026-03-08 04:56:54] 2026-03-08 03:56:21,994 | INFO     | exitcode: 0
[2026-03-08 04:56:54] 2026-03-08 03:56:21,994 | INFO     | exitmsg: OK
[2026-03-08 04:56:54] 2026-03-08 03:56:21,994 | INFO     | cpuconsumptiontime: 19263 s
[2026-03-08 04:56:54] 2026-03-08 03:56:21,994 | INFO     | nevents: 400
[2026-03-08 04:56:54] 2026-03-08 03:56:21,994 | INFO     | neventsw: 0
[2026-03-08 04:56:54] 2026-03-08 03:56:21,994 | INFO     | pid: 27621
[2026-03-08 04:56:54] 2026-03-08 03:56:21,994 | INFO     | pgrp: 27621
[2026-03-08 04:56:54] 2026-03-08 03:56:21,994 | INFO     | corecount: 8
[2026-03-08 04:56:54] 2026-03-08 03:56:21,994 | INFO     | event service: False
[2026-03-08 04:56:54] 2026-03-08 03:56:21,994 | INFO     | sizes: {0: 2295888, 11: 2295888, 2904: 2321403, 2905: 2330487, 2907: 2330657}
[2026-03-08 04:56:54] 2026-03-08 03:56:21,994 | INFO     | --------------------------------------------------
[2026-03-08 04:56:54] 2026-03-08 03:56:21,994 | INFO     | 
[2026-03-08 04:56:54] 2026-03-08 03:56:21,994 | INFO     | executing command: ls -lF /tmp/job_11270684/atlas/pilot/slots/0
[2026-03-08 04:56:54] 2026-03-08 03:56:22,004 | INFO     | queue jobs had 0 job(s) [purged]
[2026-03-08 04:56:54] 2026-03-08 03:56:22,004 | INFO     | queue payloads had 0 job(s) [purged]
[2026-03-08 04:56:54] 2026-03-08 03:56:22,004 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-08 04:56:54] 2026-03-08 03:56:22,004 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-08 04:56:54] 2026-03-08 03:56:22,004 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-08 04:56:54] 2026-03-08 03:56:22,004 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-08 04:56:54] 2026-03-08 03:56:22,004 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-08 04:56:54] 2026-03-08 03:56:22,004 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-08 04:56:54] 2026-03-08 03:56:22,004 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-08 04:56:54] 2026-03-08 03:56:22,004 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-08 04:56:54] 2026-03-08 03:56:22,004 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-08 04:56:54] 2026-03-08 03:56:22,004 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-08 04:56:54] 2026-03-08 03:56:22,004 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-08 04:56:54] 2026-03-08 03:56:22,004 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-08 04:56:54] 2026-03-08 03:56:22,004 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-08 04:56:54] 2026-03-08 03:56:22,004 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-08 04:56:54] 2026-03-08 03:56:22,004 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-08 04:56:54] 2026-03-08 03:56:22,004 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-08 04:56:54] 2026-03-08 03:56:22,005 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-08 04:56:54] 2026-03-08 03:56:22,005 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-08 04:56:54] 2026-03-08 03:56:22,005 | INFO     | job 7045392447 has completed (purged errors)
[2026-03-08 04:56:54] 2026-03-08 03:56:22,005 | INFO     | overall cleanup function is called
[2026-03-08 04:56:54] 2026-03-08 03:56:22,095 | WARNING  | process 27621 can no longer be monitored (due to stat problems) - aborting
[2026-03-08 04:56:54] 2026-03-08 03:56:22,172 | INFO     | using path: /tmp/job_11270684/atlas/pilot/slots/0/memory_monitor_summary.json (trf name=prmon)
[2026-03-08 04:56:54] 2026-03-08 03:56:22,262 | INFO     | number of running child processes to parent process 27621: 1
[2026-03-08 04:56:54] 2026-03-08 03:56:22,262 | INFO     | maximum number of monitored processes: 6
[2026-03-08 04:56:54] 2026-03-08 03:56:22,262 | INFO     | aborting job monitoring since job object (job id=7045392447) has expired
[2026-03-08 04:56:54] 2026-03-08 03:56:23,011 | INFO     | --- collectZombieJob: --- 10, [27621]
[2026-03-08 04:56:54] 2026-03-08 03:56:23,011 | INFO     | zombie collector waiting for pid 27621
[2026-03-08 04:56:54] 2026-03-08 03:56:23,011 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-08 04:56:54] 2026-03-08 03:56:23,011 | INFO     | collected zombie processes
[2026-03-08 04:56:54] 2026-03-08 03:56:23,011 | INFO     | will attempt to kill all subprocesses of pid=27621
[2026-03-08 04:56:54] 2026-03-08 03:56:23,104 | INFO     | process IDs to be killed: [27621] (in reverse order)
[2026-03-08 04:56:54] 2026-03-08 03:56:23,137 | WARNING  | found no corresponding commands to process id(s)
[2026-03-08 04:56:54] 2026-03-08 03:56:23,137 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-08 04:56:54] 2026-03-08 03:56:23,141 | INFO     | did not find any defunct processes belonging to 27621
[2026-03-08 04:56:54] 2026-03-08 03:56:23,144 | INFO     | did not find any defunct processes belonging to 27621
[2026-03-08 04:56:54] 2026-03-08 03:56:23,144 | INFO     | ready for new job
[2026-03-08 04:56:54] 2026-03-08 03:56:23,144 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-08 04:56:54] 2026-03-08 03:56:23,145 | INFO     | **************************************
[2026-03-08 04:56:54] 2026-03-08 03:56:23,145 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-03-08 04:56:54] 2026-03-08 03:56:23,145 | INFO     | **************************************
[2026-03-08 04:56:54] 2026-03-08 03:56:23,145 | INFO     | 
[2026-03-08 04:56:54] 2026-03-08 03:56:23,159 | INFO     | architecture information:
[2026-03-08 04:56:54] 2026-03-08 03:56:23,159 | INFO     | executing command: cat /etc/os-release
[2026-03-08 04:56:54] 2026-03-08 03:56:23,166 | INFO     | cat /etc/os-release:
[2026-03-08 04:56:54] NAME="CentOS Linux"
[2026-03-08 04:56:54] VERSION="7 (Core)"
[2026-03-08 04:56:54] ID="centos"
[2026-03-08 04:56:54] ID_LIKE="rhel fedora"
[2026-03-08 04:56:54] VERSION_ID="7"
[2026-03-08 04:56:54] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-08 04:56:54] ANSI_COLOR="0;31"
[2026-03-08 04:56:54] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-08 04:56:54] HOME_URL="https://www.centos.org/"
[2026-03-08 04:56:54] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-08 04:56:54] 
[2026-03-08 04:56:54] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-08 04:56:54] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-08 04:56:54] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-08 04:56:54] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-08 04:56:54] 
[2026-03-08 04:56:54] 2026-03-08 03:56:23,166 | INFO     | **************************************
[2026-03-08 04:56:54] 2026-03-08 03:56:23,668 | INFO     | executing command: df -mP /tmp/job_11270684/atlas/pilot/slots/0
[2026-03-08 04:56:54] 2026-03-08 03:56:23,675 | INFO     | sufficient remaining disk space (224401555456 B)
[2026-03-08 04:56:54] 2026-03-08 03:56:23,675 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-08 04:56:54] 2026-03-08 03:56:23,675 | INFO     | current server update state: UPDATING_FINAL
[2026-03-08 04:56:54] 2026-03-08 03:56:23,676 | INFO     | update_server=False
[2026-03-08 04:56:54] 2026-03-08 03:56:23,676 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-08 04:56:54] 2026-03-08 03:56:23,676 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-08 04:56:54] 2026-03-08 03:56:23,676 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-08 04:56:54] 2026-03-08 03:56:23,676 | INFO     | aborting loop
[2026-03-08 04:56:54] 2026-03-08 03:56:23,994 | INFO     | all data control threads have been joined
[2026-03-08 04:56:54] 2026-03-08 03:56:24,681 | INFO     | [job] retrieve thread has finished
[2026-03-08 04:56:54] 2026-03-08 03:56:24,681 | INFO     | [job] queue monitor thread has finished
[2026-03-08 04:56:54] 2026-03-08 03:56:24,681 | INFO     | [data] copytool_in thread has finished
[2026-03-08 04:56:54] 2026-03-08 03:56:24,681 | INFO     | [job] job monitor thread has finished
[2026-03-08 04:56:54] 2026-03-08 03:56:24,759 | INFO     | [payload] validate_post thread has finished
[2026-03-08 04:56:54] 2026-03-08 03:56:24,780 | INFO     | all payload control threads have been joined
[2026-03-08 04:56:54] 2026-03-08 03:56:24,874 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-08 04:56:54] 2026-03-08 03:56:25,000 | INFO     | [data] control thread has finished
[2026-03-08 04:56:54] 2026-03-08 03:56:25,208 | INFO     | [job] create_data_payload thread has finished
[2026-03-08 04:56:54] 2026-03-08 03:56:25,232 | INFO     | [payload] validate_pre thread has finished
[2026-03-08 04:56:54] 2026-03-08 03:56:25,277 | INFO     | all job control threads have been joined
[2026-03-08 04:56:54] 2026-03-08 03:56:25,634 | INFO     | [payload] failed_post thread has finished
[2026-03-08 04:56:54] 2026-03-08 03:56:25,785 | INFO     | [payload] control thread has finished
[2026-03-08 04:56:54] 2026-03-08 03:56:25,915 | INFO     | [payload] execute_payloads thread has finished
[2026-03-08 04:56:54] 2026-03-08 03:56:26,091 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-08 04:56:54] 2026-03-08 03:56:26,158 | INFO     | [job] validate thread has finished
[2026-03-08 04:56:54] 2026-03-08 03:56:26,282 | INFO     | [job] control thread has finished
[2026-03-08 04:56:54] 2026-03-08 03:56:26,879 | INFO     | [data] copytool_out thread has finished
[2026-03-08 04:56:54] 2026-03-08 03:56:30,096 | INFO     | [data] queue_monitor thread has finished
[2026-03-08 04:56:54] 2026-03-08 03:56:33,823 | INFO     | job.realtimelogging is not enabled
[2026-03-08 04:56:54] 2026-03-08 03:56:34,828 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-08 04:56:54] 2026-03-08 03:56:47,461 | INFO     | [monitor] cgroup control has ended
[2026-03-08 04:56:54] 2026-03-08 03:56:49,279 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23456247945024)>', '<ExcThread(monitor, started 23456058971904)>']
[2026-03-08 04:56:54] 2026-03-08 03:56:53,415 | INFO     | PID=23087 has CPU usage=3.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-03-08 04:56:54] 2026-03-08 03:56:53,415 | INFO     | .. there are 2 such processes running
[2026-03-08 04:56:54] 2026-03-08 03:56:53,415 | INFO     | found 0 job(s) in 20 queues
[2026-03-08 04:56:54] 2026-03-08 03:56:53,415 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-08 04:56:54] 2026-03-08 03:56:53,415 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-08 04:56:54] 2026-03-08 03:56:53,415 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-08 04:56:54] 2026-03-08 03:56:53,415 | INFO     | [monitor] control thread has ended
[2026-03-08 04:56:54] 2026-03-08 03:56:54,297 | INFO     | all workflow threads have been joined
[2026-03-08 04:56:54] 2026-03-08 03:56:54,297 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-08 04:56:54] 2026-03-08 03:56:54,297 | INFO     | traces error code: 0
[2026-03-08 04:56:54] 2026-03-08 03:56:54,297 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-08 04:56:54] 2026-03-08 03:56:54,353 [wrapper] ==== pilot stdout END ====
[2026-03-08 04:56:54] 2026-03-08 03:56:54,354 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-08 04:56:54] 2026-03-08 03:56:54,355 [wrapper] pilotpid: 23087
[2026-03-08 04:56:54] 2026-03-08 03:56:54,356 [wrapper] Pilot exit status: 0
[2026-03-08 04:56:54] 2026-03-08 03:56:54,362 [wrapper] pandaids: 7045392447
[2026-03-08 04:56:54] 2026-03-08 03:56:54,384 [wrapper] cleanup supervisor_pilot 22865 23088
[2026-03-08 04:56:54] 2026-03-08 03:56:54,385 [wrapper] Test setup, not cleaning
[2026-03-08 04:56:54] 2026-03-08 03:56:54,387 [wrapper] apfmon messages muted
[2026-03-08 04:56:54] 2026-03-08 03:56:54,388 [wrapper] ==== wrapper stdout END ====
[2026-03-08 04:56:54] 2026-03-08 03:56:54,389 [wrapper] ==== wrapper stderr END ====
[2026-03-08 04:56:54]  *** Error codes and diagnostics ***
[2026-03-08 04:56:54]     "exeErrorCode": 0,
[2026-03-08 04:56:54]     "exeErrorDiag": "",
[2026-03-08 04:56:54]     "pilotErrorCode": 0,
[2026-03-08 04:56:54]     "pilotErrorDiag": "",
[2026-03-08 04:56:54]  *** Listing of results directory ***
[2026-03-08 04:56:54] total 437380
[2026-03-08 04:56:54] -rw------- 1 mf493845 unix-user    584627 Mar  7 19:53 pilot3.tar.gz
[2026-03-08 04:56:54] -rwx------ 1 mf493845 unix-user     36322 Mar  7 19:53 runpilot2-wrapper.sh
[2026-03-08 04:56:54] -rw------- 1 mf493845 unix-user      5111 Mar  7 19:53 queuedata.json
[2026-03-08 04:56:54] -rw------- 1 mf493845 unix-user       100 Mar  8 03:00 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-08 04:56:54] -rwxr-xr-x 1 mf493845 unix-user      7986 Mar  8 03:00 run_atlas
[2026-03-08 04:56:54] -rw------- 1 mf493845 unix-user       105 Mar  8 03:00 job.xml
[2026-03-08 04:56:54] -rw-r--r-- 2 mf493845 unix-user 262719501 Mar  8 04:07 EVNT.48958608._000045.pool.root.1
[2026-03-08 04:56:54] -rw-r--r-- 2 mf493845 unix-user     15845 Mar  8 04:07 start_atlas.sh
[2026-03-08 04:56:54] drwxrwx--x 2 mf493845 unix-user       100 Mar  8 04:07 shared
[2026-03-08 04:56:54] -rw-r--r-- 2 mf493845 unix-user    597940 Mar  8 04:07 input.tar.gz
[2026-03-08 04:56:54] -rw------- 1 mf493845 unix-user      6389 Mar  8 04:07 init_data.xml
[2026-03-08 04:56:54] -rw------- 1 mf493845 unix-user         0 Mar  8 04:07 boinc_setup_complete
[2026-03-08 04:56:54] -rw------- 1 mf493845 unix-user      8192 Mar  8 04:07 boinc_mmap_file
[2026-03-08 04:56:54] -rw------- 1 mf493845 unix-user         0 Mar  8 04:07 boinc_lockfile
[2026-03-08 04:56:54] -rw------- 1 mf493845 unix-user      2527 Mar  8 04:07 pandaJob.out
[2026-03-08 04:56:54] -rw------- 1 mf493845 unix-user    999177 Mar  8 04:07 agis_schedconf.cvmfs.json
[2026-03-08 04:56:54] -rw------- 1 mf493845 unix-user   1521291 Mar  8 04:07 agis_ddmendpoints.agis.ALL.json
[2026-03-08 04:56:54] -rw------- 1 mf493845 unix-user       414 Mar  8 04:07 workernode_map.json
[2026-03-08 04:56:54] drwx------ 5 mf493845 unix-user       440 Mar  8 04:07 pilot3
[2026-03-08 04:56:54] -rw------- 1 mf493845 unix-user 179748092 Mar  8 04:55 HITS.48958610._001112.pool.root.1
[2026-03-08 04:56:54] -rw------- 1 mf493845 unix-user        95 Mar  8 04:56 pilot_heartbeat.json
[2026-03-08 04:56:54] -rw------- 1 mf493845 unix-user      1010 Mar  8 04:56 memory_monitor_summary.json
[2026-03-08 04:56:54] -rw------- 1 mf493845 unix-user    294677 Mar  8 04:56 log.48958610._001112.job.log.tgz.1
[2026-03-08 04:56:54] -rw------- 1 mf493845 unix-user      6298 Mar  8 04:56 heartbeat.json
[2026-03-08 04:56:54] -rw------- 1 mf493845 unix-user      4903 Mar  8 04:56 pilotlog.txt
[2026-03-08 04:56:54] -rw------- 1 mf493845 unix-user    458050 Mar  8 04:56 log.48958610._001112.job.log.1
[2026-03-08 04:56:54] -rw------- 1 mf493845 unix-user       357 Mar  8 04:56 output.list
[2026-03-08 04:56:54] -rw------- 1 mf493845 unix-user       620 Mar  8 04:56 runtime_log
[2026-03-08 04:56:54] -rw------- 1 mf493845 unix-user    768000 Mar  8 04:56 result.tar.gz
[2026-03-08 04:56:54] -rw------- 1 mf493845 unix-user      9219 Mar  8 04:56 runtime_log.err
[2026-03-08 04:56:54] -rw------- 1 mf493845 unix-user       643 Mar  8 04:56 2anKDmFxBJ9n9Rq4apOajLDm4fhM0noT9bVooX4SDmATULDm963VIn.diag
[2026-03-08 04:56:54] -rw------- 1 mf493845 unix-user     21920 Mar  8 04:56 stderr.txt
[2026-03-08 04:56:54] HITS file was successfully produced:
[2026-03-08 04:56:54] -rw------- 1 mf493845 unix-user 179748092 Mar  8 04:55 shared/HITS.pool.root.1
[2026-03-08 04:56:54]  *** Contents of shared directory: ***
[2026-03-08 04:56:54] total 433452
[2026-03-08 04:56:54] -rw-r--r-- 2 mf493845 unix-user 262719501 Mar  8 04:07 ATLAS.root_0
[2026-03-08 04:56:54] -rw-r--r-- 2 mf493845 unix-user     15845 Mar  8 04:07 start_atlas.sh
[2026-03-08 04:56:54] -rw-r--r-- 2 mf493845 unix-user    597940 Mar  8 04:07 input.tar.gz
[2026-03-08 04:56:54] -rw------- 1 mf493845 unix-user 179748092 Mar  8 04:55 HITS.pool.root.1
[2026-03-08 04:56:54] -rw------- 1 mf493845 unix-user    768000 Mar  8 04:56 result.tar.gz
04:56:56 (19317): run_atlas exited; CPU time 19297.968797
04:56:56 (19317): called boinc_finish(0)

</stderr_txt>
]]>

©2026 CERN