Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
22:03:02 (1611341): wrapper (7.7.26015): starting
22:03:02 (1611341): wrapper: running run_atlas (--nthreads 4)
[2026-03-08 22:03:02] Arguments: --nthreads 4
[2026-03-08 22:03:02] Threads: 4
[2026-03-08 22:03:02] Checking for CVMFS
[2026-03-08 22:03:02] No cvmfs_config command found, will try listing directly
[2026-03-08 22:03:02] CVMFS is ok
[2026-03-08 22:03:02] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-08 22:03:02] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-08 22:03:02] Further information can be found at the LHC@home message board.
[2026-03-08 22:03:02] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-08 22:03:02] Checking for apptainer binary...
[2026-03-08 22:03:02] which: no apptainer in ((null))
[2026-03-08 22:03:02] apptainer is not installed, using version from CVMFS
[2026-03-08 22:03:02] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-08 22:03:02] WARNING: Environment variable TMPDIR already has value [/var/lib/boinc/var/slot116/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut22.grid.cesnet.cz
[2026-03-08 22:03:02] apptainer works
[2026-03-08 22:03:02] Set ATHENA_PROC_NUMBER=4
[2026-03-08 22:03:02] Set ATHENA_CORE_NUMBER=4
[2026-03-08 22:03:02] Starting ATLAS job with PandaID=7043371171
[2026-03-08 22:03:02] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc/var/slot116/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-08 23:37:41]  *** The last 200 lines of the pilot log: ***
[2026-03-08 23:37:41]  lfn=log.48996069._000185.job.log.tgz.1
[2026-03-08 23:37:41]  mtime=0
[2026-03-08 23:37:41]  protocol_id=None
[2026-03-08 23:37:41]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2026-03-08 23:37:41]  replicas=None
[2026-03-08 23:37:41]  scope=mc23_13p6TeV
[2026-03-08 23:37:41]  status=None
[2026-03-08 23:37:41]  status_code=0
[2026-03-08 23:37:41]  storage_token=
[2026-03-08 23:37:41]  surl=/var/lib/boinc/var/slot116/slots/0/PanDA_Pilot-7043371171/log.48996069._000185.job.log.tgz.1
[2026-03-08 23:37:41]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/b9/47/log.48996069._000185.job.log.tgz.1
[2026-03-08 23:37:41]  workdir=None
[2026-03-08 23:37:41] ]
[2026-03-08 23:37:41] 2026-03-08 22:37:04,385 | INFO     | transferring file log.48996069._000185.job.log.tgz.1 from /var/lib/boinc/var/slot116/slots/0/PanDA_Pilot-7043371171/log.48996069._000185.job.log.tgz.1 to /var/lib/
[2026-03-08 23:37:41] 2026-03-08 22:37:04,385 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc/var/slot116/slots/0/PanDA_Pilot-7043371171/log.48996069._000185.job.log.tgz.1 /var/lib/boinc/var/slot116/slots/0/
[2026-03-08 23:37:41] 2026-03-08 22:37:04,398 | INFO     | adding to output.list: log.48996069._000185.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/b9/47/log.48996069._000185.job.log.tg
[2026-03-08 23:37:41] 2026-03-08 22:37:04,398 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-03-08 23:37:41] 2026-03-08 22:37:04,399 | INFO     | summary of transferred files:
[2026-03-08 23:37:41] 2026-03-08 22:37:04,399 | INFO     |  -- lfn=log.48996069._000185.job.log.tgz.1, status_code=0, status=transferred
[2026-03-08 23:37:41] 2026-03-08 22:37:04,399 | INFO     | stage-out finished correctly
[2026-03-08 23:37:41] 2026-03-08 22:37:04,902 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-03-08 23:37:41] 2026-03-08 22:37:05,014 | INFO     | monitor loop #407: job 0:7043371171 is in state 'finished'
[2026-03-08 23:37:41] 2026-03-08 22:37:05,014 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-03-08 23:37:41] 2026-03-08 22:37:05,255 | INFO     | time since job start (5631s) is within the limit (349056.0s)
[2026-03-08 23:37:41] 2026-03-08 22:37:06,808 | INFO     | PID=1618344 has CPU usage=13.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2026-03-08 23:37:41] 2026-03-08 22:37:06,808 | INFO     | .. there are 49 such processes running
[2026-03-08 23:37:41] 2026-03-08 22:37:07,517 | INFO     | monitor loop #408: job 0:7043371171 is in state 'finished'
[2026-03-08 23:37:41] 2026-03-08 22:37:07,517 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-03-08 23:37:41] 2026-03-08 22:37:07,808 | INFO     | time since job start (5633s) is within the limit (349056.0s)
[2026-03-08 23:37:41] 2026-03-08 22:37:07,934 | INFO     | job 7043371171 has state=finished
[2026-03-08 23:37:41] 2026-03-08 22:37:07,934 | INFO     | preparing for final server update for job 7043371171 in state='finished'
[2026-03-08 23:37:41] 2026-03-08 22:37:07,934 | INFO     | reading metadata from: /var/lib/boinc/var/slot116/slots/0/PanDA_Pilot-7043371171/jobReport.json
[2026-03-08 23:37:41] 2026-03-08 22:37:07,936 | INFO     | added worker_node to metadata from /var/lib/boinc/var/slot116/slots/0/workernode_map.json
[2026-03-08 23:37:41] 2026-03-08 22:37:07,936 | INFO     | this job has now completed (state=finished)
[2026-03-08 23:37:41] 2026-03-08 22:37:07,936 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-03-08 23:37:41] 2026-03-08 22:37:07,936 | INFO     | log transfer has been attempted: DONE
[2026-03-08 23:37:41] 2026-03-08 22:37:07,936 | INFO     | job 7043371171 has finished - writing final server update
[2026-03-08 23:37:41] 2026-03-08 22:37:07,936 | WARNING  | failed to read HTCondor job classAd: [Errno 2] No such file or directory: '/scratch/condor/execute/dir_3811877/.job.ad'
[2026-03-08 23:37:41] 2026-03-08 22:37:07,936 | INFO     | total number of processed events: 400 (read)
[2026-03-08 23:37:41] 2026-03-08 22:37:07,957 | INFO     | using path: /var/lib/boinc/var/slot116/slots/0/PanDA_Pilot-7043371171/memory_monitor_summary.json (trf name=prmon)
[2026-03-08 23:37:41] 2026-03-08 22:37:07,958 | INFO     | extracted standard info from prmon json
[2026-03-08 23:37:41] 2026-03-08 22:37:07,958 | INFO     | extracted standard memory fields from prmon json
[2026-03-08 23:37:41] 2026-03-08 22:37:07,958 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-03-08 23:37:41] 2026-03-08 22:37:07,958 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-03-08 23:37:41] 2026-03-08 22:37:07,958 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-03-08 23:37:41] 2026-03-08 22:37:07,960 | INFO     | fitting pss+swap vs Time
[2026-03-08 23:37:41] 2026-03-08 22:37:07,960 | INFO     | sum of square deviations: 190403570.0
[2026-03-08 23:37:41] 2026-03-08 22:37:07,960 | INFO     | sum of deviations: 675837849.0000002
[2026-03-08 23:37:41] 2026-03-08 22:37:07,960 | INFO     | mean x: 1773006682.0
[2026-03-08 23:37:41] 2026-03-08 22:37:07,960 | INFO     | mean y: 2338793.3294117646
[2026-03-08 23:37:41] 2026-03-08 22:37:07,960 | INFO     | intersect: -6290951937.645367
[2026-03-08 23:37:41] 2026-03-08 22:37:07,960 | INFO     | chi2: 0.0004654700364490156
[2026-03-08 23:37:41] 2026-03-08 22:37:07,960 | INFO     | current memory leak: 3.55 B/s (using 85 data points, chi2=0.00)
[2026-03-08 23:37:41] 2026-03-08 22:37:07,960 | INFO     | could have reported an average CPU frequency of 3594 MHz (7 samples)
[2026-03-08 23:37:41] 2026-03-08 22:37:07,961 | INFO     | ..............................
[2026-03-08 23:37:41] 2026-03-08 22:37:07,961 | INFO     | . Timing measurements:
[2026-03-08 23:37:41] 2026-03-08 22:37:07,961 | INFO     | . get job = 0 s
[2026-03-08 23:37:41] 2026-03-08 22:37:07,961 | INFO     | . initial setup = 4 s
[2026-03-08 23:37:41] 2026-03-08 22:37:07,961 | INFO     | . payload setup = 4 s
[2026-03-08 23:37:41] 2026-03-08 22:37:07,961 | INFO     | . stage-in = 0 s
[2026-03-08 23:37:41] 2026-03-08 22:37:07,961 | INFO     | . payload execution = 5610 s
[2026-03-08 23:37:41] 2026-03-08 22:37:07,961 | INFO     | . stage-out = 0 s
[2026-03-08 23:37:41] 2026-03-08 22:37:07,961 | INFO     | . log creation = 0 s
[2026-03-08 23:37:41] 2026-03-08 22:37:07,961 | INFO     | ..............................
[2026-03-08 23:37:41] 2026-03-08 22:37:08,013 | INFO     | 
[2026-03-08 23:37:41] 2026-03-08 22:37:08,014 | INFO     | job summary report
[2026-03-08 23:37:41] 2026-03-08 22:37:08,014 | INFO     | --------------------------------------------------
[2026-03-08 23:37:41] 2026-03-08 22:37:08,014 | INFO     | PanDA job id: 7043371171
[2026-03-08 23:37:41] 2026-03-08 22:37:08,014 | INFO     | task id: 48996069
[2026-03-08 23:37:41] 2026-03-08 22:37:08,014 | INFO     | errors: (none)
[2026-03-08 23:37:41] 2026-03-08 22:37:08,014 | INFO     | status: LOG_TRANSFER = DONE 
[2026-03-08 23:37:41] 2026-03-08 22:37:08,014 | INFO     | pilot state: finished 
[2026-03-08 23:37:41] 2026-03-08 22:37:08,014 | INFO     | transexitcode: 0
[2026-03-08 23:37:41] 2026-03-08 22:37:08,014 | INFO     | exeerrorcode: 0
[2026-03-08 23:37:41] 2026-03-08 22:37:08,014 | INFO     | exeerrordiag: 
[2026-03-08 23:37:41] 2026-03-08 22:37:08,014 | INFO     | exitcode: 0
[2026-03-08 23:37:41] 2026-03-08 22:37:08,014 | INFO     | exitmsg: OK
[2026-03-08 23:37:41] 2026-03-08 22:37:08,014 | INFO     | cpuconsumptiontime: 21469 s
[2026-03-08 23:37:41] 2026-03-08 22:37:08,014 | INFO     | nevents: 400
[2026-03-08 23:37:41] 2026-03-08 22:37:08,014 | INFO     | neventsw: 0
[2026-03-08 23:37:41] 2026-03-08 22:37:08,014 | INFO     | pid: 1632508
[2026-03-08 23:37:41] 2026-03-08 22:37:08,014 | INFO     | pgrp: 1632508
[2026-03-08 23:37:41] 2026-03-08 22:37:08,014 | INFO     | corecount: 4
[2026-03-08 23:37:41] 2026-03-08 22:37:08,014 | INFO     | event service: False
[2026-03-08 23:37:41] 2026-03-08 22:37:08,014 | INFO     | sizes: {0: 2279778, 1: 2280182, 11: 2280182, 5619: 2315862, 5620: 2315862, 5623: 2316056}
[2026-03-08 23:37:41] 2026-03-08 22:37:08,014 | INFO     | --------------------------------------------------
[2026-03-08 23:37:41] 2026-03-08 22:37:08,014 | INFO     | 
[2026-03-08 23:37:41] 2026-03-08 22:37:08,014 | INFO     | executing command: ls -lF /var/lib/boinc/var/slot116/slots/0
[2026-03-08 23:37:41] 2026-03-08 22:37:08,033 | INFO     | queue jobs had 0 job(s) [purged]
[2026-03-08 23:37:41] 2026-03-08 22:37:08,033 | INFO     | queue payloads had 0 job(s) [purged]
[2026-03-08 23:37:41] 2026-03-08 22:37:08,034 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-08 23:37:41] 2026-03-08 22:37:08,034 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-08 23:37:41] 2026-03-08 22:37:08,034 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-08 23:37:41] 2026-03-08 22:37:08,034 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-08 23:37:41] 2026-03-08 22:37:08,034 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-08 23:37:41] 2026-03-08 22:37:08,034 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-08 23:37:41] 2026-03-08 22:37:08,034 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-08 23:37:41] 2026-03-08 22:37:08,034 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-08 23:37:41] 2026-03-08 22:37:08,034 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-08 23:37:41] 2026-03-08 22:37:08,034 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-08 23:37:41] 2026-03-08 22:37:08,034 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-08 23:37:41] 2026-03-08 22:37:08,034 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-08 23:37:41] 2026-03-08 22:37:08,034 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-08 23:37:41] 2026-03-08 22:37:08,034 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-08 23:37:41] 2026-03-08 22:37:08,034 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-08 23:37:41] 2026-03-08 22:37:08,034 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-08 23:37:41] 2026-03-08 22:37:08,034 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-08 23:37:41] 2026-03-08 22:37:08,034 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-08 23:37:41] 2026-03-08 22:37:08,034 | INFO     | job 7043371171 has completed (purged errors)
[2026-03-08 23:37:41] 2026-03-08 22:37:08,034 | INFO     | overall cleanup function is called
[2026-03-08 23:37:41] 2026-03-08 22:37:09,041 | INFO     | --- collectZombieJob: --- 10, [1632508]
[2026-03-08 23:37:41] 2026-03-08 22:37:09,042 | INFO     | zombie collector waiting for pid 1632508
[2026-03-08 23:37:41] 2026-03-08 22:37:09,042 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-08 23:37:41] 2026-03-08 22:37:09,042 | INFO     | collected zombie processes
[2026-03-08 23:37:41] 2026-03-08 22:37:09,042 | INFO     | will attempt to kill all subprocesses of pid=1632508
[2026-03-08 23:37:41] 2026-03-08 22:37:09,504 | INFO     | process IDs to be killed: [1632508] (in reverse order)
[2026-03-08 23:37:41] 2026-03-08 22:37:09,732 | WARNING  | found no corresponding commands to process id(s)
[2026-03-08 23:37:41] 2026-03-08 22:37:09,732 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-08 23:37:41] 2026-03-08 22:37:09,761 | INFO     | did not find any defunct processes belonging to 1632508
[2026-03-08 23:37:41] 2026-03-08 22:37:09,790 | INFO     | did not find any defunct processes belonging to 1632508
[2026-03-08 23:37:41] 2026-03-08 22:37:09,791 | INFO     | ready for new job
[2026-03-08 23:37:41] 2026-03-08 22:37:09,791 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-08 23:37:41] 2026-03-08 22:37:09,792 | INFO     | **************************************
[2026-03-08 23:37:41] 2026-03-08 22:37:09,792 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-03-08 23:37:41] 2026-03-08 22:37:09,792 | INFO     | **************************************
[2026-03-08 23:37:41] 2026-03-08 22:37:09,792 | INFO     | 
[2026-03-08 23:37:41] 2026-03-08 22:37:09,797 | INFO     | architecture information:
[2026-03-08 23:37:41] 2026-03-08 22:37:09,798 | INFO     | executing command: cat /etc/os-release
[2026-03-08 23:37:41] 2026-03-08 22:37:09,812 | INFO     | cat /etc/os-release:
[2026-03-08 23:37:41] NAME="CentOS Linux"
[2026-03-08 23:37:41] VERSION="7 (Core)"
[2026-03-08 23:37:41] ID="centos"
[2026-03-08 23:37:41] ID_LIKE="rhel fedora"
[2026-03-08 23:37:41] VERSION_ID="7"
[2026-03-08 23:37:41] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-08 23:37:41] ANSI_COLOR="0;31"
[2026-03-08 23:37:41] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-08 23:37:41] HOME_URL="https://www.centos.org/"
[2026-03-08 23:37:41] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-08 23:37:41] 
[2026-03-08 23:37:41] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-08 23:37:41] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-08 23:37:41] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-08 23:37:41] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-08 23:37:41] 
[2026-03-08 23:37:41] 2026-03-08 22:37:09,812 | INFO     | **************************************
[2026-03-08 23:37:41] 2026-03-08 22:37:10,315 | INFO     | executing command: df -mP /var/lib/boinc/var/slot116/slots/0
[2026-03-08 23:37:41] 2026-03-08 22:37:10,329 | INFO     | sufficient remaining disk space (23138926592 B)
[2026-03-08 23:37:41] 2026-03-08 22:37:10,330 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-08 23:37:41] 2026-03-08 22:37:10,330 | INFO     | current server update state: UPDATING_FINAL
[2026-03-08 23:37:41] 2026-03-08 22:37:10,330 | INFO     | update_server=False
[2026-03-08 23:37:41] 2026-03-08 22:37:10,330 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-08 23:37:41] 2026-03-08 22:37:10,330 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-08 23:37:41] 2026-03-08 22:37:10,426 | INFO     | all job control threads have been joined
[2026-03-08 23:37:41] 2026-03-08 22:37:10,764 | INFO     | all data control threads have been joined
[2026-03-08 23:37:41] 2026-03-08 22:37:10,970 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-08 23:37:41] 2026-03-08 22:37:11,026 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-08 23:37:41] 2026-03-08 22:37:11,026 | INFO     | aborting loop
[2026-03-08 23:37:41] 2026-03-08 22:37:11,117 | INFO     | all payload control threads have been joined
[2026-03-08 23:37:41] 2026-03-08 22:37:11,335 | INFO     | [job] retrieve thread has finished
[2026-03-08 23:37:41] 2026-03-08 22:37:11,432 | INFO     | [job] control thread has finished
[2026-03-08 23:37:41] 2026-03-08 22:37:11,646 | INFO     | [payload] validate_pre thread has finished
[2026-03-08 23:37:41] 2026-03-08 22:37:11,688 | INFO     | [data] copytool_in thread has finished
[2026-03-08 23:37:41] 2026-03-08 22:37:11,769 | INFO     | [data] control thread has finished
[2026-03-08 23:37:41] 2026-03-08 22:37:12,031 | INFO     | [job] job monitor thread has finished
[2026-03-08 23:37:41] 2026-03-08 22:37:12,123 | INFO     | [payload] control thread has finished
[2026-03-08 23:37:41] 2026-03-08 22:37:12,336 | INFO     | [data] copytool_out thread has finished
[2026-03-08 23:37:41] 2026-03-08 22:37:12,387 | INFO     | [payload] execute_payloads thread has finished
[2026-03-08 23:37:41] 2026-03-08 22:37:12,508 | INFO     | [payload] failed_post thread has finished
[2026-03-08 23:37:41] 2026-03-08 22:37:12,735 | INFO     | [job] validate thread has finished
[2026-03-08 23:37:41] 2026-03-08 22:37:12,802 | INFO     | [job] create_data_payload thread has finished
[2026-03-08 23:37:41] 2026-03-08 22:37:12,929 | INFO     | [payload] validate_post thread has finished
[2026-03-08 23:37:41] 2026-03-08 22:37:13,023 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-08 23:37:41] 2026-03-08 22:37:14,028 | INFO     | [job] queue monitor thread has finished
[2026-03-08 23:37:41] 2026-03-08 22:37:14,976 | INFO     | [data] queue_monitor thread has finished
[2026-03-08 23:37:41] 2026-03-08 22:37:20,758 | INFO     | job.realtimelogging is not enabled
[2026-03-08 23:37:41] 2026-03-08 22:37:21,763 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-08 23:37:41] 2026-03-08 22:37:23,372 | INFO     | [monitor] cgroup control has ended
[2026-03-08 23:37:41] 2026-03-08 22:37:24,377 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 22731263215424)>', '<ExcThread(monitor, started 22731023460096)>']
[2026-03-08 23:37:41] 2026-03-08 22:37:29,402 | INFO     | all workflow threads have been joined
[2026-03-08 23:37:41] 2026-03-08 22:37:29,402 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-08 23:37:41] 2026-03-08 22:37:29,402 | INFO     | traces error code: 0
[2026-03-08 23:37:41] 2026-03-08 22:37:29,402 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-08 23:37:41] 2026-03-08 22:37:41,473 | INFO     | PID=1618344 has CPU usage=3.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-03-08 23:37:41] 2026-03-08 22:37:41,473 | INFO     | .. there are 49 such processes running
[2026-03-08 23:37:41] 2026-03-08 22:37:41,474 | INFO     | found 0 job(s) in 20 queues
[2026-03-08 23:37:41] 2026-03-08 22:37:41,474 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-08 23:37:41] 2026-03-08 22:37:41,474 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-08 23:37:41] 2026-03-08 22:37:41,474 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-08 23:37:41] 2026-03-08 22:37:41,474 | INFO     | [monitor] control thread has ended
[2026-03-08 23:37:41] 2026-03-08 22:37:41,593 [wrapper] ==== pilot stdout END ====
[2026-03-08 23:37:41] 2026-03-08 22:37:41,595 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-08 23:37:41] 2026-03-08 22:37:41,597 [wrapper] pilotpid: 1618344
[2026-03-08 23:37:41] 2026-03-08 22:37:41,599 [wrapper] Pilot exit status: 0
[2026-03-08 23:37:41] 2026-03-08 22:37:41,608 [wrapper] pandaids: 7043371171
[2026-03-08 23:37:41] 2026-03-08 22:37:41,748 [wrapper] cleanup supervisor_pilot 2480797 1618345
[2026-03-08 23:37:41] 2026-03-08 22:37:41,751 [wrapper] Test setup, not cleaning
[2026-03-08 23:37:41] 2026-03-08 22:37:41,755 [wrapper] apfmon messages muted
[2026-03-08 23:37:41] 2026-03-08 22:37:41,757 [wrapper] ==== wrapper stdout END ====
[2026-03-08 23:37:41] 2026-03-08 22:37:41,761 [wrapper] ==== wrapper stderr END ====
[2026-03-08 23:37:41]  *** Error codes and diagnostics ***
[2026-03-08 23:37:41]     "exeErrorCode": 0,
[2026-03-08 23:37:41]     "exeErrorDiag": "",
[2026-03-08 23:37:41]     "pilotErrorCode": 0,
[2026-03-08 23:37:41]     "pilotErrorDiag": "",
[2026-03-08 23:37:41]  *** Listing of results directory ***
[2026-03-08 23:37:41] total 736336
[2026-03-08 23:37:41] -rw-r--r--. 1 boinc boinc    584627 Mar  6 17:14 pilot3.tar.gz
[2026-03-08 23:37:41] -rwx------. 1 boinc boinc     36322 Mar  6 17:48 runpilot2-wrapper.sh
[2026-03-08 23:37:41] -rw-r--r--. 1 boinc boinc      5111 Mar  6 17:49 queuedata.json
[2026-03-08 23:37:41] -rw-r--r--. 1 boinc boinc       100 Mar  8 22:03 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-08 23:37:41] -rwxr-xr-x. 1 boinc boinc      7986 Mar  8 22:03 run_atlas
[2026-03-08 23:37:41] -rw-r--r--. 1 boinc boinc       105 Mar  8 22:03 job.xml
[2026-03-08 23:37:41] -rw-r--r--. 1 boinc boinc      6709 Mar  8 22:03 init_data.xml
[2026-03-08 23:37:41] -rw-r--r--. 2 boinc boinc 544594079 Mar  8 22:03 EVNT.48329618._000004.pool.root.1
[2026-03-08 23:37:41] drwxrwx--x. 2 boinc boinc      4096 Mar  8 22:03 shared
[2026-03-08 23:37:41] -rw-r--r--. 2 boinc boinc    597939 Mar  8 22:03 input.tar.gz
[2026-03-08 23:37:41] -rw-r--r--. 2 boinc boinc     15845 Mar  8 22:03 start_atlas.sh
[2026-03-08 23:37:41] -rw-r--r--. 1 boinc boinc         0 Mar  8 22:03 boinc_lockfile
[2026-03-08 23:37:41] -rw-r--r--. 1 boinc boinc      2498 Mar  8 22:03 pandaJob.out
[2026-03-08 23:37:41] -rw-------. 1 boinc boinc    999108 Mar  8 22:03 agis_schedconf.cvmfs.json
[2026-03-08 23:37:41] -rw-------. 1 boinc boinc   1511578 Mar  8 22:03 agis_ddmendpoints.agis.ALL.json
[2026-03-08 23:37:41] -rw-------. 1 boinc boinc       445 Mar  8 22:03 workernode_map.json
[2026-03-08 23:37:41] drwx------. 5 boinc boinc      4096 Mar  8 22:03 pilot3
[2026-03-08 23:37:41] -rw-------. 1 boinc boinc 203233263 Mar  8 23:36 HITS.48996069._000185.pool.root.1
[2026-03-08 23:37:41] -rw-r--r--. 1 boinc boinc       530 Mar  8 23:36 boinc_task_state.xml
[2026-03-08 23:37:41] -rw-------. 1 boinc boinc        95 Mar  8 23:36 pilot_heartbeat.json
[2026-03-08 23:37:41] -rw-------. 1 boinc boinc      1044 Mar  8 23:37 memory_monitor_summary.json
[2026-03-08 23:37:41] -rw-------. 1 boinc boinc    307323 Mar  8 23:37 log.48996069._000185.job.log.tgz.1
[2026-03-08 23:37:41] -rw-------. 1 boinc boinc      6349 Mar  8 23:37 heartbeat.json
[2026-03-08 23:37:41] -rw-r--r--. 1 boinc boinc      8192 Mar  8 23:37 boinc_mmap_file
[2026-03-08 23:37:41] -rw-r--r--. 1 boinc boinc        27 Mar  8 23:37 wrapper_checkpoint.txt
[2026-03-08 23:37:41] -rw-------. 1 boinc boinc       823 Mar  8 23:37 pilotlog.txt
[2026-03-08 23:37:41] -rw-------. 1 boinc boinc    818442 Mar  8 23:37 log.48996069._000185.job.log.1
[2026-03-08 23:37:41] -rw-------. 1 boinc boinc       357 Mar  8 23:37 output.list
[2026-03-08 23:37:41] -rw-r--r--. 1 boinc boinc       620 Mar  8 23:37 runtime_log
[2026-03-08 23:37:41] -rw-------. 1 boinc boinc   1146880 Mar  8 23:37 result.tar.gz
[2026-03-08 23:37:41] -rw-r--r--. 1 boinc boinc      9221 Mar  8 23:37 runtime_log.err
[2026-03-08 23:37:41] -rw-------. 1 boinc boinc       663 Mar  8 23:37 CDCNDmMXnI9n9Rq4apOajLDm4fhM0noT9bVooX4SDmYnQLDm07tZ0m.diag
[2026-03-08 23:37:41] -rw-r--r--. 1 boinc boinc     21596 Mar  8 23:37 stderr.txt
[2026-03-08 23:37:41] HITS file was successfully produced:
[2026-03-08 23:37:41] -rw-------. 1 boinc boinc 203233263 Mar  8 23:36 shared/HITS.pool.root.1
[2026-03-08 23:37:41]  *** Contents of shared directory: ***
[2026-03-08 23:37:41] total 732032
[2026-03-08 23:37:41] -rw-r--r--. 2 boinc boinc 544594079 Mar  8 22:03 ATLAS.root_0
[2026-03-08 23:37:41] -rw-r--r--. 2 boinc boinc    597939 Mar  8 22:03 input.tar.gz
[2026-03-08 23:37:41] -rw-r--r--. 2 boinc boinc     15845 Mar  8 22:03 start_atlas.sh
[2026-03-08 23:37:41] -rw-------. 1 boinc boinc 203233263 Mar  8 23:36 HITS.pool.root.1
[2026-03-08 23:37:41] -rw-------. 1 boinc boinc   1146880 Mar  8 23:37 result.tar.gz
23:37:43 (1611341): run_atlas exited; CPU time 21721.186501
23:37:43 (1611341): called boinc_finish(0)

</stderr_txt>
]]>

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