Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
09:33:57 (667980): wrapper (7.7.26015): starting
09:33:57 (667980): wrapper: running run_atlas (--nthreads 4)
[2026-03-08 09:33:57] Arguments: --nthreads 4
[2026-03-08 09:33:57] Threads: 4
[2026-03-08 09:33:57] Checking for CVMFS
[2026-03-08 09:33:57] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-08 09:33:57] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-08 09:33:57] Running cvmfs_config stat atlas.cern.ch
[2026-03-08 09:33:57] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-08 09:33:57] 2.9.2.0 3116 3168 100128 157033 3 50 34437462 36864001 0 130560 0 1888905 99.988 124890 8458 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-03-08 09:33:57] CVMFS is ok
[2026-03-08 09:33:57] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-08 09:33:57] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-08 09:33:57] Further information can be found at the LHC@home message board.
[2026-03-08 09:33:57] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-08 09:33:57] Checking for apptainer binary...
[2026-03-08 09:33:57] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-08 09:33:57] Running /usr/bin/apptainer --version
[2026-03-08 09:33:57] apptainer version 1.4.1-1.1
[2026-03-08 09:33:57] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-08 09:33:57] thA373a
[2026-03-08 09:33:57] apptainer works
[2026-03-08 09:33:57] Set ATHENA_PROC_NUMBER=4
[2026-03-08 09:33:57] Set ATHENA_CORE_NUMBER=4
[2026-03-08 09:33:57] Starting ATLAS job with PandaID=7045343694
[2026-03-08 09:33:57] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-08 09:41:17]  *** The last 200 lines of the pilot log: ***
[2026-03-08 09:41:17] 2026-03-08 08:40:26,711 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-08 09:41:17] 2026-03-08 08:40:26,711 | INFO     | current server update state: UPDATING_FINAL
[2026-03-08 09:41:17] 2026-03-08 08:40:26,711 | INFO     | update_server=False
[2026-03-08 09:41:17] 2026-03-08 08:40:26,711 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-08 09:41:17] 2026-03-08 08:40:26,711 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-08 09:41:17] 2026-03-08 08:40:26,711 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2026-03-08 09:41:17] 2026-03-08 08:40:26,711 | INFO     | found 0 job(s) in 20 queues
[2026-03-08 09:41:17] 2026-03-08 08:40:26,711 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-08 09:41:17] 2026-03-08 08:40:26,711 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-08 09:41:17] 2026-03-08 08:40:26,745 | INFO     | all payload control threads have been joined
[2026-03-08 09:41:17] 2026-03-08 08:40:26,789 | INFO     | all data control threads have been joined
[2026-03-08 09:41:17] 2026-03-08 08:40:27,421 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-08 09:41:17] 2026-03-08 08:40:27,421 | INFO     | aborting loop
[2026-03-08 09:41:17] 2026-03-08 08:40:27,516 | INFO     | all job control threads have been joined
[2026-03-08 09:41:17] 2026-03-08 08:40:27,691 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-08 09:41:17] 2026-03-08 08:40:27,716 | INFO     | [job] retrieve thread has finished
[2026-03-08 09:41:17] 2026-03-08 08:40:27,717 | INFO     | [job] queue monitor thread has finished
[2026-03-08 09:41:17] 2026-03-08 08:40:27,751 | INFO     | [payload] control thread has finished
[2026-03-08 09:41:17] 2026-03-08 08:40:27,795 | INFO     | [data] control thread has finished
[2026-03-08 09:41:17] 2026-03-08 08:40:27,847 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-08 09:41:17] 2026-03-08 08:40:28,172 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-08 09:41:17] 2026-03-08 08:40:28,427 | INFO     | [job] job monitor thread has finished
[2026-03-08 09:41:17] 2026-03-08 08:40:28,521 | INFO     | [job] control thread has finished
[2026-03-08 09:41:17] 2026-03-08 08:40:28,578 | INFO     | [job] validate thread has finished
[2026-03-08 09:41:17] 2026-03-08 08:40:28,684 | INFO     | [job] create_data_payload thread has finished
[2026-03-08 09:41:17] 2026-03-08 08:40:28,759 | INFO     | [payload] validate_pre thread has finished
[2026-03-08 09:41:17] 2026-03-08 08:40:28,889 | INFO     | [data] copytool_in thread has finished
[2026-03-08 09:41:17] 2026-03-08 08:40:29,021 | INFO     | [payload] failed_post thread has finished
[2026-03-08 09:41:17] 2026-03-08 08:40:29,048 | INFO     | [payload] execute_payloads thread has finished
[2026-03-08 09:41:17] 2026-03-08 08:40:29,147 | INFO     | [payload] validate_post thread has finished
[2026-03-08 09:41:17] 2026-03-08 08:40:29,697 | INFO     | [data] copytool_out thread has finished
[2026-03-08 09:41:17] 2026-03-08 08:40:32,179 | INFO     | [data] queue_monitor thread has finished
[2026-03-08 09:41:17] 2026-03-08 08:41:10,102 | INFO     | [monitor] cgroup control has ended
[2026-03-08 09:41:17] 2026-03-08 08:41:12,099 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140507701544768)>', '<ExcThread(monitor, started 140506600290048)>']
[2026-03-08 09:41:17] 2026-03-08 08:41:12,944 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-08 09:41:17] 2026-03-08 08:41:12,944 | INFO     | [monitor] control thread has ended
[2026-03-08 09:41:17] 2026-03-08 08:41:17,125 | INFO     | all workflow threads have been joined
[2026-03-08 09:41:17] 2026-03-08 08:41:17,125 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-08 09:41:17] 2026-03-08 08:41:17,125 | INFO     | traces error code: 0
[2026-03-08 09:41:17] 2026-03-08 08:41:17,125 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-08 09:41:17] 2026-03-08 08:41:17,203 [wrapper] ==== pilot stdout END ====
[2026-03-08 09:41:17] 2026-03-08 08:41:17,207 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-08 09:41:17] 2026-03-08 08:41:17,212 [wrapper] pilotpid: 672092
[2026-03-08 09:41:17] 2026-03-08 08:41:17,216 [wrapper] Pilot exit status: 0
[2026-03-08 09:41:17] 2026-03-08 08:41:17,228 [wrapper] pandaids: 7045343694
[2026-03-08 09:41:17] 2026-03-08 08:41:17,251 [wrapper] cleanup supervisor_pilot  672098 672093
[2026-03-08 09:41:17] 2026-03-08 08:41:17,255 [wrapper] Test setup, not cleaning
[2026-03-08 09:41:17] 2026-03-08 08:41:17,259 [wrapper] apfmon messages muted
[2026-03-08 09:41:17] 2026-03-08 08:41:17,263 [wrapper] ==== wrapper stdout END ====
[2026-03-08 09:41:17] 2026-03-08 08:41:17,267 [wrapper] ==== wrapper stderr END ====
[2026-03-08 09:41:17]  *** Error codes and diagnostics ***
[2026-03-08 09:41:17]     "exeErrorCode": 0,
[2026-03-08 09:41:17]     "exeErrorDiag": "",
[2026-03-08 09:41:17]     "pilotErrorCode": 1305,
[2026-03-08 09:41:17]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: EVNTtoHITS got a SIGSEGV signal (exit code 139); Possible memory leak: 'pss' slope: 7481.53 KB/s",
[2026-03-08 09:41:17]  *** Listing of results directory ***
[2026-03-08 09:41:17] total 342340
[2026-03-08 09:41:17] -rw-r--r-- 1 boinc boinc    584627 Mar  7 19:09 pilot3.tar.gz
[2026-03-08 09:41:17] -rwx------ 1 boinc boinc     36322 Mar  7 19:10 runpilot2-wrapper.sh
[2026-03-08 09:41:17] -rw-r--r-- 1 boinc boinc      5111 Mar  7 19:12 queuedata.json
[2026-03-08 09:41:17] -rw-r--r-- 1 boinc boinc       100 Mar  8 09:33 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-08 09:41:17] -rwxr-xr-x 1 boinc boinc      7986 Mar  8 09:33 run_atlas
[2026-03-08 09:41:17] -rw-r--r-- 1 boinc boinc       105 Mar  8 09:33 job.xml
[2026-03-08 09:41:17] -rw-r--r-- 2 boinc boinc 346165027 Mar  8 09:33 EVNT.48997924._000022.pool.root.1
[2026-03-08 09:41:17] -rw-r--r-- 2 boinc boinc    597957 Mar  8 09:33 input.tar.gz
[2026-03-08 09:41:17] -rw-r--r-- 2 boinc boinc     15845 Mar  8 09:33 start_atlas.sh
[2026-03-08 09:41:17] drwxrwx--x 2 boinc boinc      4096 Mar  8 09:33 shared
[2026-03-08 09:41:17] -rw-r--r-- 1 boinc boinc         0 Mar  8 09:33 boinc_setup_complete
[2026-03-08 09:41:17] -rw-r--r-- 1 boinc boinc      6377 Mar  8 09:33 init_data.xml
[2026-03-08 09:41:17] -rw-r--r-- 1 boinc boinc         0 Mar  8 09:33 boinc_lockfile
[2026-03-08 09:41:17] -rw-r--r-- 1 boinc boinc      2585 Mar  8 09:33 pandaJob.out
[2026-03-08 09:41:17] -rw------- 1 boinc boinc    999169 Mar  8 09:34 agis_schedconf.cvmfs.json
[2026-03-08 09:41:17] -rw------- 1 boinc boinc   1521291 Mar  8 09:34 agis_ddmendpoints.agis.ALL.json
[2026-03-08 09:41:17] -rw------- 1 boinc boinc       428 Mar  8 09:34 workernode_map.json
[2026-03-08 09:41:17] drwx------ 5 boinc boinc      4096 Mar  8 09:34 pilot3
[2026-03-08 09:41:17] -rw------- 1 boinc boinc       998 Mar  8 09:38 memory_monitor_summary.json
[2026-03-08 09:41:17] -rw------- 1 boinc boinc    130236 Mar  8 09:38 log.48997926._000547.job.log.tgz.1
[2026-03-08 09:41:17] -rw-r--r-- 1 boinc boinc       525 Mar  8 09:38 boinc_task_state.xml
[2026-03-08 09:41:17] -rw------- 1 boinc boinc        95 Mar  8 09:40 pilot_heartbeat.json
[2026-03-08 09:41:17] -rw------- 1 boinc boinc      7196 Mar  8 09:40 heartbeat.json
[2026-03-08 09:41:17] -rw-r--r-- 1 boinc boinc        23 Mar  8 09:41 wrapper_checkpoint.txt
[2026-03-08 09:41:17] -rw-r--r-- 1 boinc boinc      8192 Mar  8 09:41 boinc_mmap_file
[2026-03-08 09:41:17] -rw------- 1 boinc boinc      4552 Mar  8 09:41 pilotlog.txt
[2026-03-08 09:41:17] -rw------- 1 boinc boinc    109427 Mar  8 09:41 log.48997926._000547.job.log.1
[2026-03-08 09:41:17] -rw------- 1 boinc boinc       188 Mar  8 09:41 output.list
[2026-03-08 09:41:17] -rw-r--r-- 1 boinc boinc       620 Mar  8 09:41 runtime_log
[2026-03-08 09:41:17] -rw------- 1 boinc boinc    256000 Mar  8 09:41 result.tar.gz
[2026-03-08 09:41:17] -rw-r--r-- 1 boinc boinc      8748 Mar  8 09:41 runtime_log.err
[2026-03-08 09:41:17] -rw------- 1 boinc boinc       649 Mar  8 09:41 KXvMDm5HBJ9n9Rq4apOajLDm4fhM0noT9bVooX4SDmYOULDmw5hYcm.diag
[2026-03-08 09:41:17] -rw-r--r-- 1 boinc boinc      7786 Mar  8 09:41 stderr.txt
[2026-03-08 09:41:17] No HITS result produced
[2026-03-08 09:41:17]  *** Contents of shared directory: ***
[2026-03-08 09:41:17] total 338908
[2026-03-08 09:41:17] -rw-r--r-- 2 boinc boinc 346165027 Mar  8 09:33 ATLAS.root_0
[2026-03-08 09:41:17] -rw-r--r-- 2 boinc boinc    597957 Mar  8 09:33 input.tar.gz
[2026-03-08 09:41:17] -rw-r--r-- 2 boinc boinc     15845 Mar  8 09:33 start_atlas.sh
[2026-03-08 09:41:17] -rw------- 1 boinc boinc    256000 Mar  8 09:41 result.tar.gz
09:41:19 (667980): run_atlas exited; CPU time 98.457292
09:41:19 (667980): called boinc_finish(0)

</stderr_txt>
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