Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
11:45:57 (17965): wrapper (7.7.26015): starting
11:45:57 (17965): wrapper: running run_atlas (--nthreads 4)
[2026-03-08 11:45:57] Arguments: --nthreads 4
[2026-03-08 11:45:57] Threads: 4
[2026-03-08 11:45:57] Checking for CVMFS
[2026-03-08 11:45:57] No cvmfs_config command found, will try listing directly
[2026-03-08 11:45:57] CVMFS is ok
[2026-03-08 11:45:57] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-08 11:45:57] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-08 11:45:57] Further information can be found at the LHC@home message board.
[2026-03-08 11:45:57] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-08 11:45:57] Checking for apptainer binary...
[2026-03-08 11:45:57] which: no apptainer in ((null))
[2026-03-08 11:45:57] apptainer is not installed, using version from CVMFS
[2026-03-08 11:45:57] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-08 11:45:58] WARNING: Environment variable TMPDIR already has value [/var/lib/boinc/var/slot68/slots/4/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut28.grid.cesnet.cz
[2026-03-08 11:45:58] apptainer works
[2026-03-08 11:45:58] Set ATHENA_PROC_NUMBER=4
[2026-03-08 11:45:58] Set ATHENA_CORE_NUMBER=4
[2026-03-08 11:45:58] Starting ATLAS job with PandaID=7039181614
[2026-03-08 11:45:58] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc/var/slot68/slots/4 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-08 13:05:24]  *** The last 200 lines of the pilot log: ***
[2026-03-08 13:05:24] 2026-03-08 12:04:19,490 | INFO     | summary of transferred files:
[2026-03-08 13:05:24] 2026-03-08 12:04:19,490 | INFO     |  -- lfn=log.48955010._012578.job.log.tgz.1, status_code=0, status=transferred
[2026-03-08 13:05:24] 2026-03-08 12:04:19,490 | INFO     | stage-out finished correctly
[2026-03-08 13:05:24] 2026-03-08 12:04:19,583 | INFO     | time since job start (4689s) is within the limit (349056.0s)
[2026-03-08 13:05:24] 2026-03-08 12:04:21,588 | INFO     | time since job start (4691s) is within the limit (349056.0s)
[2026-03-08 13:05:24] 2026-03-08 12:04:22,015 | WARNING  | process 37473 can no longer be monitored (due to stat problems) - aborting
[2026-03-08 13:05:24] 2026-03-08 12:04:22,015 | INFO     | using path: /var/lib/boinc/var/slot68/slots/4/PanDA_Pilot-7039181614/memory_monitor_summary.json (trf name=prmon)
[2026-03-08 13:05:24] 2026-03-08 12:04:22,016 | INFO     | using path: /var/lib/boinc/var/slot68/slots/4/PanDA_Pilot-7039181614/memory_monitor_summary.json (trf name=prmon)
[2026-03-08 13:05:24] 2026-03-08 12:04:22,016 | WARNING  | memory limits not set in config, using defaults: 'NoneType' object has no attribute 'get'
[2026-03-08 13:05:24] 2026-03-08 12:04:22,016 | WARNING  | maxPSS not found in memory monitor output
[2026-03-08 13:05:24] 2026-03-08 12:04:22,016 | INFO     | payload log (log.EVNTtoHITS) within allowed size limit (2147483648 B): 2638548 B
[2026-03-08 13:05:24] 2026-03-08 12:04:22,016 | INFO     | payload log (payload.stdout) within allowed size limit (2147483648 B): 15612 B
[2026-03-08 13:05:24] 2026-03-08 12:04:22,016 | INFO     | executing command: df -mP /var/lib/boinc/var/slot68/slots/4
[2026-03-08 13:05:24] 2026-03-08 12:04:22,032 | INFO     | sufficient remaining disk space (20191379456 B)
[2026-03-08 13:05:24] 2026-03-08 12:04:22,032 | INFO     | work directory size check will use 5033164800 B as a max limit (20% grace limit added, divider=1)
[2026-03-08 13:05:24] 2026-03-08 12:04:22,033 | INFO     | size of work directory /var/lib/boinc/var/slot68/slots/4/PanDA_Pilot-7039181614: 2937771 B (within 5033164800 B limit)
[2026-03-08 13:05:24] 2026-03-08 12:04:22,033 | INFO     | pfn file=/var/lib/boinc/var/slot68/slots/4/PanDA_Pilot-7039181614/HITS.48955010._012578.pool.root.1 does not exist (skip from workdir size calculation)
[2026-03-08 13:05:24] 2026-03-08 12:04:22,033 | INFO     | total size of present files: 0 B (workdir size: 2937771 B)
[2026-03-08 13:05:24] 2026-03-08 12:04:22,033 | INFO     | output file size check: skipping output file /var/lib/boinc/var/slot68/slots/4/PanDA_Pilot-7039181614/HITS.48955010._012578.pool.root.1 since it does not exist
[2026-03-08 13:05:24] 2026-03-08 12:04:22,185 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-03-08 13:05:24] 2026-03-08 12:04:22,533 | INFO     | number of running child processes to parent process 37473: 1
[2026-03-08 13:05:24] 2026-03-08 12:04:22,533 | INFO     | maximum number of monitored processes: 6
[2026-03-08 13:05:24] 2026-03-08 12:04:23,594 | INFO     | time since job start (4693s) is within the limit (349056.0s)
[2026-03-08 13:05:24] 2026-03-08 12:04:25,036 | INFO     | monitor loop #341: job 0:7039181614 is in state 'finished'
[2026-03-08 13:05:24] 2026-03-08 12:04:25,036 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-03-08 13:05:24] 2026-03-08 12:04:25,170 | INFO     | job 7039181614 has state=finished
[2026-03-08 13:05:24] 2026-03-08 12:04:25,171 | INFO     | preparing for final server update for job 7039181614 in state='finished'
[2026-03-08 13:05:24] 2026-03-08 12:04:25,171 | INFO     | reading metadata from: /var/lib/boinc/var/slot68/slots/4/PanDA_Pilot-7039181614/jobReport.json
[2026-03-08 13:05:24] 2026-03-08 12:04:25,174 | INFO     | added worker_node to metadata from /var/lib/boinc/var/slot68/slots/4/workernode_map.json
[2026-03-08 13:05:24] 2026-03-08 12:04:25,174 | INFO     | this job has now completed (state=finished)
[2026-03-08 13:05:24] 2026-03-08 12:04:25,174 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-03-08 13:05:24] 2026-03-08 12:04:25,174 | INFO     | log transfer has been attempted: DONE
[2026-03-08 13:05:24] 2026-03-08 12:04:25,174 | INFO     | job 7039181614 has finished - writing final server update
[2026-03-08 13:05:24] 2026-03-08 12:04:25,175 | WARNING  | failed to read HTCondor job classAd: [Errno 2] No such file or directory: '/scratch/condor/execute/dir_2947298/.job.ad'
[2026-03-08 13:05:24] 2026-03-08 12:04:25,175 | INFO     | total number of processed events: 400 (read)
[2026-03-08 13:05:24] 2026-03-08 12:04:25,196 | INFO     | using path: /var/lib/boinc/var/slot68/slots/4/PanDA_Pilot-7039181614/memory_monitor_summary.json (trf name=prmon)
[2026-03-08 13:05:24] 2026-03-08 12:04:25,197 | INFO     | extracted standard info from prmon json
[2026-03-08 13:05:24] 2026-03-08 12:04:25,197 | INFO     | extracted standard memory fields from prmon json
[2026-03-08 13:05:24] 2026-03-08 12:04:25,197 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-03-08 13:05:24] 2026-03-08 12:04:25,197 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-03-08 13:05:24] 2026-03-08 12:04:25,197 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-03-08 13:05:24] 2026-03-08 12:04:25,199 | INFO     | fitting pss+swap vs Time
[2026-03-08 13:05:24] 2026-03-08 12:04:25,199 | INFO     | sum of square deviations: 106336877.5
[2026-03-08 13:05:24] 2026-03-08 12:04:25,199 | INFO     | sum of deviations: 91959269.0
[2026-03-08 13:05:24] 2026-03-08 12:04:25,199 | INFO     | mean x: 1772969200.5
[2026-03-08 13:05:24] 2026-03-08 12:04:25,199 | INFO     | mean y: 2328227.5428571426
[2026-03-08 13:05:24] 2026-03-08 12:04:25,199 | INFO     | intersect: -1530921153.768856
[2026-03-08 13:05:24] 2026-03-08 12:04:25,199 | INFO     | chi2: 0.0002766763629528998
[2026-03-08 13:05:24] 2026-03-08 12:04:25,199 | INFO     | current memory leak: 0.86 B/s (using 70 data points, chi2=0.00)
[2026-03-08 13:05:24] 2026-03-08 12:04:25,199 | INFO     | could have reported an average CPU frequency of 3600 MHz (6 samples)
[2026-03-08 13:05:24] 2026-03-08 12:04:25,200 | INFO     | ..............................
[2026-03-08 13:05:24] 2026-03-08 12:04:25,200 | INFO     | . Timing measurements:
[2026-03-08 13:05:24] 2026-03-08 12:04:25,200 | INFO     | . get job = 0 s
[2026-03-08 13:05:24] 2026-03-08 12:04:25,200 | INFO     | . initial setup = 5 s
[2026-03-08 13:05:24] 2026-03-08 12:04:25,200 | INFO     | . payload setup = 5 s
[2026-03-08 13:05:24] 2026-03-08 12:04:25,200 | INFO     | . stage-in = 0 s
[2026-03-08 13:05:24] 2026-03-08 12:04:25,200 | INFO     | . payload execution = 4669 s
[2026-03-08 13:05:24] 2026-03-08 12:04:25,200 | INFO     | . stage-out = 0 s
[2026-03-08 13:05:24] 2026-03-08 12:04:25,200 | INFO     | . log creation = 0 s
[2026-03-08 13:05:24] 2026-03-08 12:04:25,200 | INFO     | ..............................
[2026-03-08 13:05:24] 2026-03-08 12:04:25,250 | INFO     | 
[2026-03-08 13:05:24] 2026-03-08 12:04:25,250 | INFO     | job summary report
[2026-03-08 13:05:24] 2026-03-08 12:04:25,250 | INFO     | --------------------------------------------------
[2026-03-08 13:05:24] 2026-03-08 12:04:25,250 | INFO     | PanDA job id: 7039181614
[2026-03-08 13:05:24] 2026-03-08 12:04:25,250 | INFO     | task id: 48955010
[2026-03-08 13:05:24] 2026-03-08 12:04:25,250 | INFO     | errors: (none)
[2026-03-08 13:05:24] 2026-03-08 12:04:25,250 | INFO     | status: LOG_TRANSFER = DONE 
[2026-03-08 13:05:24] 2026-03-08 12:04:25,250 | INFO     | pilot state: finished 
[2026-03-08 13:05:24] 2026-03-08 12:04:25,250 | INFO     | transexitcode: 0
[2026-03-08 13:05:24] 2026-03-08 12:04:25,250 | INFO     | exeerrorcode: 0
[2026-03-08 13:05:24] 2026-03-08 12:04:25,250 | INFO     | exeerrordiag: 
[2026-03-08 13:05:24] 2026-03-08 12:04:25,251 | INFO     | exitcode: 0
[2026-03-08 13:05:24] 2026-03-08 12:04:25,251 | INFO     | exitmsg: OK
[2026-03-08 13:05:24] 2026-03-08 12:04:25,251 | INFO     | cpuconsumptiontime: 18035 s
[2026-03-08 13:05:24] 2026-03-08 12:04:25,251 | INFO     | nevents: 400
[2026-03-08 13:05:24] 2026-03-08 12:04:25,251 | INFO     | neventsw: 0
[2026-03-08 13:05:24] 2026-03-08 12:04:25,251 | INFO     | pid: 37473
[2026-03-08 13:05:24] 2026-03-08 12:04:25,251 | INFO     | pgrp: 37473
[2026-03-08 13:05:24] 2026-03-08 12:04:25,251 | INFO     | corecount: 4
[2026-03-08 13:05:24] 2026-03-08 12:04:25,251 | INFO     | event service: False
[2026-03-08 13:05:24] 2026-03-08 12:04:25,251 | INFO     | sizes: {0: 2295501, 1: 2295763, 11: 2295791, 4677: 2322018, 4678: 2331093, 4681: 2331121, 4684: 2331443}
[2026-03-08 13:05:24] 2026-03-08 12:04:25,251 | INFO     | --------------------------------------------------
[2026-03-08 13:05:24] 2026-03-08 12:04:25,251 | INFO     | 
[2026-03-08 13:05:24] 2026-03-08 12:04:25,251 | INFO     | executing command: ls -lF /var/lib/boinc/var/slot68/slots/4
[2026-03-08 13:05:24] 2026-03-08 12:04:25,269 | INFO     | queue jobs had 0 job(s) [purged]
[2026-03-08 13:05:24] 2026-03-08 12:04:25,269 | INFO     | queue payloads had 0 job(s) [purged]
[2026-03-08 13:05:24] 2026-03-08 12:04:25,269 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-08 13:05:24] 2026-03-08 12:04:25,269 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-08 13:05:24] 2026-03-08 12:04:25,269 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-08 13:05:24] 2026-03-08 12:04:25,269 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-08 13:05:24] 2026-03-08 12:04:25,269 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-08 13:05:24] 2026-03-08 12:04:25,269 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-08 13:05:24] 2026-03-08 12:04:25,269 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-08 13:05:24] 2026-03-08 12:04:25,269 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-08 13:05:24] 2026-03-08 12:04:25,269 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-08 13:05:24] 2026-03-08 12:04:25,269 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-08 13:05:24] 2026-03-08 12:04:25,269 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-08 13:05:24] 2026-03-08 12:04:25,269 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-08 13:05:24] 2026-03-08 12:04:25,269 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-08 13:05:24] 2026-03-08 12:04:25,269 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-08 13:05:24] 2026-03-08 12:04:25,269 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-08 13:05:24] 2026-03-08 12:04:25,269 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-08 13:05:24] 2026-03-08 12:04:25,269 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-08 13:05:24] 2026-03-08 12:04:25,270 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-08 13:05:24] 2026-03-08 12:04:25,270 | INFO     | job 7039181614 has completed (purged errors)
[2026-03-08 13:05:24] 2026-03-08 12:04:25,270 | INFO     | overall cleanup function is called
[2026-03-08 13:05:24] 2026-03-08 12:04:25,295 | INFO     | PID=24953 has CPU usage=13.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-03-08 13:05:24] 2026-03-08 12:04:25,295 | INFO     | .. there are 48 such processes running
[2026-03-08 13:05:24] 2026-03-08 12:04:26,277 | INFO     | --- collectZombieJob: --- 10, [37473]
[2026-03-08 13:05:24] 2026-03-08 12:04:26,277 | INFO     | zombie collector waiting for pid 37473
[2026-03-08 13:05:24] 2026-03-08 12:04:26,277 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-08 13:05:24] 2026-03-08 12:04:26,277 | INFO     | collected zombie processes
[2026-03-08 13:05:24] 2026-03-08 12:04:26,277 | INFO     | will attempt to kill all subprocesses of pid=37473
[2026-03-08 13:05:24] 2026-03-08 12:04:26,725 | INFO     | process IDs to be killed: [37473] (in reverse order)
[2026-03-08 13:05:24] 2026-03-08 12:04:26,938 | WARNING  | found no corresponding commands to process id(s)
[2026-03-08 13:05:24] 2026-03-08 12:04:26,939 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-08 13:05:24] 2026-03-08 12:04:26,967 | INFO     | did not find any defunct processes belonging to 37473
[2026-03-08 13:05:24] 2026-03-08 12:04:26,994 | INFO     | did not find any defunct processes belonging to 37473
[2026-03-08 13:05:24] 2026-03-08 12:04:26,994 | INFO     | ready for new job
[2026-03-08 13:05:24] 2026-03-08 12:04:26,994 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-08 13:05:24] 2026-03-08 12:04:26,996 | INFO     | **************************************
[2026-03-08 13:05:24] 2026-03-08 12:04:26,996 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-03-08 13:05:24] 2026-03-08 12:04:26,996 | INFO     | **************************************
[2026-03-08 13:05:24] 2026-03-08 12:04:26,996 | INFO     | 
[2026-03-08 13:05:24] 2026-03-08 12:04:27,002 | INFO     | architecture information:
[2026-03-08 13:05:24] 2026-03-08 12:04:27,002 | INFO     | executing command: cat /etc/os-release
[2026-03-08 13:05:24] 2026-03-08 12:04:27,017 | INFO     | cat /etc/os-release:
[2026-03-08 13:05:24] NAME="CentOS Linux"
[2026-03-08 13:05:24] VERSION="7 (Core)"
[2026-03-08 13:05:24] ID="centos"
[2026-03-08 13:05:24] ID_LIKE="rhel fedora"
[2026-03-08 13:05:24] VERSION_ID="7"
[2026-03-08 13:05:24] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-08 13:05:24] ANSI_COLOR="0;31"
[2026-03-08 13:05:24] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-08 13:05:24] HOME_URL="https://www.centos.org/"
[2026-03-08 13:05:24] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-08 13:05:24] 
[2026-03-08 13:05:24] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-08 13:05:24] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-08 13:05:24] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-08 13:05:24] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-08 13:05:24] 
[2026-03-08 13:05:24] 2026-03-08 12:04:27,017 | INFO     | **************************************
[2026-03-08 13:05:24] 2026-03-08 12:04:27,520 | INFO     | executing command: df -mP /var/lib/boinc/var/slot68/slots/4
[2026-03-08 13:05:24] 2026-03-08 12:04:27,536 | INFO     | sufficient remaining disk space (20391657472 B)
[2026-03-08 13:05:24] 2026-03-08 12:04:27,536 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-08 13:05:24] 2026-03-08 12:04:27,536 | INFO     | current server update state: UPDATING_FINAL
[2026-03-08 13:05:24] 2026-03-08 12:04:27,536 | INFO     | update_server=False
[2026-03-08 13:05:24] 2026-03-08 12:04:27,536 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-08 13:05:24] 2026-03-08 12:04:27,539 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-03-08 13:05:24] 2026-03-08 12:04:27,539 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-03-08 13:05:24] 2026-03-08 12:04:27,539 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-08 13:05:24] 2026-03-08 12:04:27,539 | INFO     | will abort loop
[2026-03-08 13:05:24] 2026-03-08 12:04:27,552 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-08 13:05:24] 2026-03-08 12:04:27,926 | INFO     | all data control threads have been joined
[2026-03-08 13:05:24] 2026-03-08 12:04:28,228 | INFO     | all payload control threads have been joined
[2026-03-08 13:05:24] 2026-03-08 12:04:28,245 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-08 13:05:24] 2026-03-08 12:04:28,541 | INFO     | [job] retrieve thread has finished
[2026-03-08 13:05:24] 2026-03-08 12:04:28,544 | INFO     | [job] job monitor thread has finished
[2026-03-08 13:05:24] 2026-03-08 12:04:28,632 | INFO     | all job control threads have been joined
[2026-03-08 13:05:24] 2026-03-08 12:04:28,683 | INFO     | [payload] execute_payloads thread has finished
[2026-03-08 13:05:24] 2026-03-08 12:04:28,901 | INFO     | [job] validate thread has finished
[2026-03-08 13:05:24] 2026-03-08 12:04:28,915 | INFO     | [payload] validate_pre thread has finished
[2026-03-08 13:05:24] 2026-03-08 12:04:28,931 | INFO     | [data] control thread has finished
[2026-03-08 13:05:24] 2026-03-08 12:04:29,046 | INFO     | [job] create_data_payload thread has finished
[2026-03-08 13:05:24] 2026-03-08 12:04:29,177 | INFO     | [payload] failed_post thread has finished
[2026-03-08 13:05:24] 2026-03-08 12:04:29,233 | INFO     | [payload] control thread has finished
[2026-03-08 13:05:24] 2026-03-08 12:04:29,418 | INFO     | [data] copytool_in thread has finished
[2026-03-08 13:05:24] 2026-03-08 12:04:29,557 | INFO     | [data] copytool_out thread has finished
[2026-03-08 13:05:24] 2026-03-08 12:04:29,578 | INFO     | [payload] validate_post thread has finished
[2026-03-08 13:05:24] 2026-03-08 12:04:29,638 | INFO     | [job] control thread has finished
[2026-03-08 13:05:24] 2026-03-08 12:04:30,258 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-08 13:05:24] 2026-03-08 12:04:31,263 | INFO     | [job] queue monitor thread has finished
[2026-03-08 13:05:24] 2026-03-08 12:04:32,251 | INFO     | [data] queue_monitor thread has finished
[2026-03-08 13:05:24] 2026-03-08 12:04:37,714 | INFO     | job.realtimelogging is not enabled
[2026-03-08 13:05:24] 2026-03-08 12:04:38,719 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-08 13:05:24] 2026-03-08 12:04:57,899 | INFO     | PID=24953 has CPU usage=3.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-03-08 13:05:24] 2026-03-08 12:04:57,899 | INFO     | .. there are 49 such processes running
[2026-03-08 13:05:24] 2026-03-08 12:04:57,900 | INFO     | found 0 job(s) in 20 queues
[2026-03-08 13:05:24] 2026-03-08 12:04:57,901 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-08 13:05:24] 2026-03-08 12:04:57,901 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-08 13:05:24] 2026-03-08 12:05:17,549 | INFO     | [monitor] cgroup control has ended
[2026-03-08 13:05:24] 2026-03-08 12:05:18,939 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23211769403200)>', '<ExcThread(monitor, started 23211520812800)>']
[2026-03-08 13:05:24] 2026-03-08 12:05:19,002 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-08 13:05:24] 2026-03-08 12:05:19,002 | INFO     | [monitor] control thread has ended
[2026-03-08 13:05:24] 2026-03-08 12:05:23,964 | INFO     | all workflow threads have been joined
[2026-03-08 13:05:24] 2026-03-08 12:05:23,964 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-08 13:05:24] 2026-03-08 12:05:23,964 | INFO     | traces error code: 0
[2026-03-08 13:05:24] 2026-03-08 12:05:23,965 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-08 13:05:24] 2026-03-08 12:05:24,123 [wrapper] ==== pilot stdout END ====
[2026-03-08 13:05:24] 2026-03-08 12:05:24,126 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-08 13:05:24] 2026-03-08 12:05:24,129 [wrapper] pilotpid: 24953
[2026-03-08 13:05:24] 2026-03-08 12:05:24,131 [wrapper] Pilot exit status: 0
[2026-03-08 13:05:24] 2026-03-08 12:05:24,141 [wrapper] pandaids: 7039181614
[2026-03-08 13:05:24] 2026-03-08 12:05:24,264 [wrapper] cleanup supervisor_pilot  689436 24954
[2026-03-08 13:05:24] 2026-03-08 12:05:24,267 [wrapper] Test setup, not cleaning
[2026-03-08 13:05:24] 2026-03-08 12:05:24,270 [wrapper] apfmon messages muted
[2026-03-08 13:05:24] 2026-03-08 12:05:24,273 [wrapper] ==== wrapper stdout END ====
[2026-03-08 13:05:24] 2026-03-08 12:05:24,276 [wrapper] ==== wrapper stderr END ====
[2026-03-08 13:05:24]  *** Error codes and diagnostics ***
[2026-03-08 13:05:24]     "exeErrorCode": 0,
[2026-03-08 13:05:24]     "exeErrorDiag": "",
[2026-03-08 13:05:24]     "pilotErrorCode": 0,
[2026-03-08 13:05:24]     "pilotErrorDiag": "",
[2026-03-08 13:05:24]  *** Listing of results directory ***
[2026-03-08 13:05:24] total 621868
[2026-03-08 13:05:24] -rwx------. 1 boinc boinc     36322 Mar  7 19:09 runpilot2-wrapper.sh
[2026-03-08 13:05:24] -rw-r--r--. 1 boinc boinc    584627 Mar  7 19:09 pilot3.tar.gz
[2026-03-08 13:05:24] -rw-r--r--. 1 boinc boinc      5111 Mar  7 19:10 queuedata.json
[2026-03-08 13:05:24] -rw-r--r--. 1 boinc boinc       100 Mar  8 11:45 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-08 13:05:24] -rwxr-xr-x. 1 boinc boinc      7986 Mar  8 11:45 run_atlas
[2026-03-08 13:05:24] -rw-r--r--. 1 boinc boinc       105 Mar  8 11:45 job.xml
[2026-03-08 13:05:24] -rw-r--r--. 2 boinc boinc     15845 Mar  8 11:45 start_atlas.sh
[2026-03-08 13:05:24] drwxrwx--x. 2 boinc boinc      4096 Mar  8 11:45 shared
[2026-03-08 13:05:24] -rw-r--r--. 2 boinc boinc    597953 Mar  8 11:45 input.tar.gz
[2026-03-08 13:05:24] -rw-r--r--. 1 boinc boinc      6705 Mar  8 11:45 init_data.xml
[2026-03-08 13:05:24] -rw-r--r--. 2 boinc boinc 442558193 Mar  8 11:45 EVNT.46701403._001252.pool.root.1
[2026-03-08 13:05:24] -rw-r--r--. 1 boinc boinc         0 Mar  8 11:45 boinc_lockfile
[2026-03-08 13:05:24] -rw-r--r--. 1 boinc boinc      2562 Mar  8 11:45 pandaJob.out
[2026-03-08 13:05:24] -rw-------. 1 boinc boinc    999169 Mar  8 11:46 agis_schedconf.cvmfs.json
[2026-03-08 13:05:24] -rw-------. 1 boinc boinc   1521291 Mar  8 11:46 agis_ddmendpoints.agis.ALL.json
[2026-03-08 13:05:24] -rw-------. 1 boinc boinc       443 Mar  8 11:46 workernode_map.json
[2026-03-08 13:05:24] drwx------. 5 boinc boinc      4096 Mar  8 11:46 pilot3
[2026-03-08 13:05:24] -rw-------. 1 boinc boinc 188368710 Mar  8 13:03 HITS.48955010._012578.pool.root.1
[2026-03-08 13:05:24] -rw-r--r--. 1 boinc boinc       530 Mar  8 13:04 boinc_task_state.xml
[2026-03-08 13:05:24] -rw-------. 1 boinc boinc      1044 Mar  8 13:04 memory_monitor_summary.json
[2026-03-08 13:05:24] -rw-------. 1 boinc boinc    271331 Mar  8 13:04 log.48955010._012578.job.log.tgz.1
[2026-03-08 13:05:24] -rw-------. 1 boinc boinc      6353 Mar  8 13:04 heartbeat.json
[2026-03-08 13:05:24] -rw-------. 1 boinc boinc        95 Mar  8 13:04 pilot_heartbeat.json
[2026-03-08 13:05:24] -rw-r--r--. 1 boinc boinc      8192 Mar  8 13:05 boinc_mmap_file
[2026-03-08 13:05:24] -rw-r--r--. 1 boinc boinc        27 Mar  8 13:05 wrapper_checkpoint.txt
[2026-03-08 13:05:24] -rw-------. 1 boinc boinc      5085 Mar  8 13:05 pilotlog.txt
[2026-03-08 13:05:24] -rw-------. 1 boinc boinc    689793 Mar  8 13:05 log.48955010._012578.job.log.1
[2026-03-08 13:05:24] -rw-------. 1 boinc boinc       357 Mar  8 13:05 output.list
[2026-03-08 13:05:24] -rw-r--r--. 1 boinc boinc       620 Mar  8 13:05 runtime_log
[2026-03-08 13:05:24] -rw-------. 1 boinc boinc    983040 Mar  8 13:05 result.tar.gz
[2026-03-08 13:05:24] -rw-r--r--. 1 boinc boinc      9204 Mar  8 13:05 runtime_log.err
[2026-03-08 13:05:24] -rw-------. 1 boinc boinc       662 Mar  8 13:05 YJINDmQGBJ9nsSi4ap6QjLDmwznN0nGgGQJmIVkRDmujWLDmaYRaPn.diag
[2026-03-08 13:05:24] -rw-r--r--. 1 boinc boinc     22362 Mar  8 13:05 stderr.txt
[2026-03-08 13:05:24] HITS file was successfully produced:
[2026-03-08 13:05:24] -rw-------. 1 boinc boinc 188368710 Mar  8 13:03 shared/HITS.pool.root.1
[2026-03-08 13:05:24]  *** Contents of shared directory: ***
[2026-03-08 13:05:24] total 617712
[2026-03-08 13:05:24] -rw-r--r--. 2 boinc boinc     15845 Mar  8 11:45 start_atlas.sh
[2026-03-08 13:05:24] -rw-r--r--. 2 boinc boinc    597953 Mar  8 11:45 input.tar.gz
[2026-03-08 13:05:24] -rw-r--r--. 2 boinc boinc 442558193 Mar  8 11:45 ATLAS.root_0
[2026-03-08 13:05:24] -rw-------. 1 boinc boinc 188368710 Mar  8 13:03 HITS.pool.root.1
[2026-03-08 13:05:24] -rw-------. 1 boinc boinc    983040 Mar  8 13:05 result.tar.gz
13:05:25 (17965): run_atlas exited; CPU time 18233.732031
13:05:25 (17965): called boinc_finish(0)

</stderr_txt>
]]>

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