Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
06:53:21 (16835): wrapper (7.7.26015): starting
06:53:21 (16835): wrapper: running run_atlas (--nthreads 8)
[2026-03-08 06:53:21] Arguments: --nthreads 8
[2026-03-08 06:53:21] Threads: 8
[2026-03-08 06:53:21] Checking for CVMFS
[2026-03-08 06:53:22] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-08 06:53:23] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-08 06:53:23] Running cvmfs_config stat atlas.cern.ch
[2026-03-08 06:53:25] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-08 06:53:25] 2.11.2.0 820 118539 136708 157029 3 93 13016571 25165824 1083 130560 161 58968837 99.853 36015879 1095 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2026-03-08 06:53:25] CVMFS is ok
[2026-03-08 06:53:25] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-08 06:53:25] Checking for apptainer binary...
[2026-03-08 06:53:25] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-08 06:53:25] Running /usr/bin/apptainer --version
[2026-03-08 06:53:25] apptainer version 1.3.2-1.el7
[2026-03-08 06:53:25] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-08 06:53:48] cg-vwn494.simple-grid.lan
[2026-03-08 06:53:48] apptainer works
[2026-03-08 06:53:48] Set ATHENA_PROC_NUMBER=8
[2026-03-08 06:53:48] Set ATHENA_CORE_NUMBER=8
[2026-03-08 06:53:48] Starting ATLAS job with PandaID=7039173604
[2026-03-08 06:53:48] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/5 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-08 10:53:20]  *** The last 200 lines of the pilot log: ***
[2026-03-08 10:53:20] 2026-03-08 09:52:27,125 | INFO     | total number of processed events: 400 (read)
[2026-03-08 10:53:20] 2026-03-08 09:52:27,127 | INFO     | using path: /var/lib/boinc/slots/5/PanDA_Pilot-7039173604/memory_monitor_summary.json (trf name=prmon)
[2026-03-08 10:53:20] 2026-03-08 09:52:27,127 | INFO     | extracted standard info from prmon json
[2026-03-08 10:53:20] 2026-03-08 09:52:27,127 | INFO     | extracted standard memory fields from prmon json
[2026-03-08 10:53:20] 2026-03-08 09:52:27,128 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-03-08 10:53:20] 2026-03-08 09:52:27,128 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-03-08 10:53:20] 2026-03-08 09:52:27,128 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-03-08 10:53:20] 2026-03-08 09:52:27,133 | INFO     | fitting pss+swap vs Time
[2026-03-08 10:53:20] 2026-03-08 09:52:27,133 | INFO     | sum of square deviations: 3485088600.0
[2026-03-08 10:53:20] 2026-03-08 09:52:27,135 | INFO     | sum of deviations: 125326655557.00005
[2026-03-08 10:53:20] 2026-03-08 09:52:27,135 | INFO     | mean x: 1772956680.5
[2026-03-08 10:53:20] 2026-03-08 09:52:27,135 | INFO     | mean y: 2395211.4285714286
[2026-03-08 10:53:20] 2026-03-08 09:52:27,135 | INFO     | intersect: -63754586810.35006
[2026-03-08 10:53:20] 2026-03-08 09:52:27,136 | INFO     | chi2: 8.250887301528982
[2026-03-08 10:53:20] 2026-03-08 09:52:27,136 | INFO     | sum of square deviations: 3256879670.0
[2026-03-08 10:53:20] 2026-03-08 09:52:27,138 | INFO     | sum of deviations: 136979116629.0
[2026-03-08 10:53:20] 2026-03-08 09:52:27,138 | INFO     | mean x: 1772956528.0
[2026-03-08 10:53:20] 2026-03-08 09:52:27,138 | INFO     | mean y: 2402818.315068493
[2026-03-08 10:53:20] 2026-03-08 09:52:27,138 | INFO     | intersect: -74565294988.91122
[2026-03-08 10:53:20] 2026-03-08 09:52:27,139 | INFO     | chi2: 7.543224654002097
[2026-03-08 10:53:20] 2026-03-08 09:52:27,139 | INFO     | current chi2=7.543224654002097 (change=8.576806610796233 %)
[2026-03-08 10:53:20] 2026-03-08 09:52:27,139 | INFO     | right removable region: 218
[2026-03-08 10:53:20] 2026-03-08 09:52:27,139 | INFO     | sum of square deviations: 3256879670.0
[2026-03-08 10:53:20] 2026-03-08 09:52:27,141 | INFO     | sum of deviations: 48180023450.00001
[2026-03-08 10:53:20] 2026-03-08 09:52:27,141 | INFO     | mean x: 1772956833.0
[2026-03-08 10:53:20] 2026-03-08 09:52:27,141 | INFO     | mean y: 2446732.1461187215
[2026-03-08 10:53:20] 2026-03-08 09:52:27,141 | INFO     | intersect: -26225449427.67048
[2026-03-08 10:53:20] 2026-03-08 09:52:27,142 | INFO     | chi2: 3.1961198426300728
[2026-03-08 10:53:20] 2026-03-08 09:52:27,142 | INFO     | current chi2=3.1961198426300728 (change=61.26331961851187 %)
[2026-03-08 10:53:20] 2026-03-08 09:52:27,142 | INFO     | sum of square deviations: 3038856977.5
[2026-03-08 10:53:20] 2026-03-08 09:52:27,147 | INFO     | sum of deviations: -5253095520.0
[2026-03-08 10:53:20] 2026-03-08 09:52:27,147 | INFO     | mean x: 1772956985.5
[2026-03-08 10:53:20] 2026-03-08 09:52:27,147 | INFO     | mean y: 2484010.831775701
[2026-03-08 10:53:20] 2026-03-08 09:52:27,148 | INFO     | intersect: 3067291754.875319
[2026-03-08 10:53:20] 2026-03-08 09:52:27,148 | INFO     | chi2: 0.8984291506842829
[2026-03-08 10:53:20] 2026-03-08 09:52:27,148 | INFO     | current chi2=0.8984291506842829 (change=71.89000428892022 %)
[2026-03-08 10:53:20] 2026-03-08 09:52:27,149 | INFO     | sum of square deviations: 2830787960.0
[2026-03-08 10:53:20] 2026-03-08 09:52:27,150 | INFO     | sum of deviations: -15729957882.000002
[2026-03-08 10:53:20] 2026-03-08 09:52:27,150 | INFO     | mean x: 1772957138.0
[2026-03-08 10:53:20] 2026-03-08 09:52:27,150 | INFO     | mean y: 2491671.038277512
[2026-03-08 10:53:20] 2026-03-08 09:52:27,151 | INFO     | intersect: 9854356770.58154
[2026-03-08 10:53:20] 2026-03-08 09:52:27,151 | INFO     | chi2: 0.803626437133363
[2026-03-08 10:53:20] 2026-03-08 09:52:27,151 | INFO     | current chi2=0.803626437133363 (change=10.552052265747829 %)
[2026-03-08 10:53:20] 2026-03-08 09:52:27,151 | INFO     | left removable region: 30
[2026-03-08 10:53:20] 2026-03-08 09:52:27,152 | INFO     | sum of square deviations: 2060343747.0
[2026-03-08 10:53:20] 2026-03-08 09:52:27,153 | INFO     | sum of deviations: -2344918750.9999995
[2026-03-08 10:53:20] 2026-03-08 09:52:27,153 | INFO     | mean x: 1772957412.5
[2026-03-08 10:53:20] 2026-03-08 09:52:27,153 | INFO     | mean y: 2502588.244680851
[2026-03-08 10:53:20] 2026-03-08 09:52:27,153 | INFO     | intersect: 2020341158.7983599
[2026-03-08 10:53:20] 2026-03-08 09:52:27,154 | INFO     | chi2: 0.005788014212995089
[2026-03-08 10:53:20] 2026-03-08 09:52:27,154 | INFO     | current memory leak: -1.14 B/s (using 188 data points, chi2=0.01)
[2026-03-08 10:53:20] 2026-03-08 09:52:27,155 | INFO     | could have reported an average CPU frequency of 2249 MHz (11 samples)
[2026-03-08 10:53:20] 2026-03-08 09:52:27,155 | INFO     | ..............................
[2026-03-08 10:53:20] 2026-03-08 09:52:27,155 | INFO     | . Timing measurements:
[2026-03-08 10:53:20] 2026-03-08 09:52:27,155 | INFO     | . get job = 0 s
[2026-03-08 10:53:20] 2026-03-08 09:52:27,155 | INFO     | . initial setup = 116 s
[2026-03-08 10:53:20] 2026-03-08 09:52:27,155 | INFO     | . payload setup = 140 s
[2026-03-08 10:53:20] 2026-03-08 09:52:27,155 | INFO     | . stage-in = 0 s
[2026-03-08 10:53:20] 2026-03-08 09:52:27,155 | INFO     | . payload execution = 13796 s
[2026-03-08 10:53:20] 2026-03-08 09:52:27,155 | INFO     | . stage-out = 4 s
[2026-03-08 10:53:20] 2026-03-08 09:52:27,156 | INFO     | . log creation = 1 s
[2026-03-08 10:53:20] 2026-03-08 09:52:27,156 | INFO     | ..............................
[2026-03-08 10:53:20] 2026-03-08 09:52:27,290 | INFO     | 
[2026-03-08 10:53:20] 2026-03-08 09:52:27,290 | INFO     | job summary report
[2026-03-08 10:53:20] 2026-03-08 09:52:27,290 | INFO     | --------------------------------------------------
[2026-03-08 10:53:20] 2026-03-08 09:52:27,290 | INFO     | PanDA job id: 7039173604
[2026-03-08 10:53:20] 2026-03-08 09:52:27,290 | INFO     | task id: 48955010
[2026-03-08 10:53:20] 2026-03-08 09:52:27,290 | INFO     | errors: (none)
[2026-03-08 10:53:20] 2026-03-08 09:52:27,290 | INFO     | status: LOG_TRANSFER = DONE 
[2026-03-08 10:53:20] 2026-03-08 09:52:27,291 | INFO     | pilot state: finished 
[2026-03-08 10:53:20] 2026-03-08 09:52:27,291 | INFO     | transexitcode: 0
[2026-03-08 10:53:20] 2026-03-08 09:52:27,291 | INFO     | exeerrorcode: 0
[2026-03-08 10:53:20] 2026-03-08 09:52:27,291 | INFO     | exeerrordiag: 
[2026-03-08 10:53:20] 2026-03-08 09:52:27,291 | INFO     | exitcode: 0
[2026-03-08 10:53:20] 2026-03-08 09:52:27,291 | INFO     | exitmsg: OK
[2026-03-08 10:53:20] 2026-03-08 09:52:27,291 | INFO     | cpuconsumptiontime: 49106 s
[2026-03-08 10:53:20] 2026-03-08 09:52:27,291 | INFO     | nevents: 400
[2026-03-08 10:53:20] 2026-03-08 09:52:27,291 | INFO     | neventsw: 0
[2026-03-08 10:53:20] 2026-03-08 09:52:27,291 | INFO     | pid: 25282
[2026-03-08 10:53:20] 2026-03-08 09:52:27,292 | INFO     | pgrp: 25282
[2026-03-08 10:53:20] 2026-03-08 09:52:27,292 | INFO     | corecount: 8
[2026-03-08 10:53:20] 2026-03-08 09:52:27,292 | INFO     | event service: False
[2026-03-08 10:53:20] 2026-03-08 09:52:27,292 | INFO     | sizes: {0: 2294664, 1: 2295349, 2: 2264724, 3: 2295838, 13: 2295838, 13940: 2326399, 13946: 2335453, 13948: 2335591}
[2026-03-08 10:53:20] 2026-03-08 09:52:27,292 | INFO     | --------------------------------------------------
[2026-03-08 10:53:20] 2026-03-08 09:52:27,292 | INFO     | 
[2026-03-08 10:53:20] 2026-03-08 09:52:27,292 | INFO     | executing command: ls -lF /var/lib/boinc/slots/5
[2026-03-08 10:53:20] 2026-03-08 09:52:27,358 | INFO     | queue jobs had 0 job(s) [purged]
[2026-03-08 10:53:20] 2026-03-08 09:52:27,358 | INFO     | queue payloads had 0 job(s) [purged]
[2026-03-08 10:53:20] 2026-03-08 09:52:27,358 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-08 10:53:20] 2026-03-08 09:52:27,358 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-08 10:53:20] 2026-03-08 09:52:27,358 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-08 10:53:20] 2026-03-08 09:52:27,359 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-08 10:53:20] 2026-03-08 09:52:27,359 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-08 10:53:20] 2026-03-08 09:52:27,359 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-08 10:53:20] 2026-03-08 09:52:27,359 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-08 10:53:20] 2026-03-08 09:52:27,359 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-08 10:53:20] 2026-03-08 09:52:27,359 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-08 10:53:20] 2026-03-08 09:52:27,359 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-08 10:53:20] 2026-03-08 09:52:27,359 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-08 10:53:20] 2026-03-08 09:52:27,359 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-08 10:53:20] 2026-03-08 09:52:27,360 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-08 10:53:20] 2026-03-08 09:52:27,360 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-08 10:53:20] 2026-03-08 09:52:27,360 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-08 10:53:20] 2026-03-08 09:52:27,360 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-08 10:53:20] 2026-03-08 09:52:27,360 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-08 10:53:20] 2026-03-08 09:52:27,360 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-08 10:53:20] 2026-03-08 09:52:27,360 | INFO     | job 7039173604 has completed (purged errors)
[2026-03-08 10:53:20] 2026-03-08 09:52:27,360 | INFO     | overall cleanup function is called
[2026-03-08 10:53:20] 2026-03-08 09:52:28,368 | INFO     | --- collectZombieJob: --- 10, [25282]
[2026-03-08 10:53:20] 2026-03-08 09:52:28,368 | INFO     | zombie collector waiting for pid 25282
[2026-03-08 10:53:20] 2026-03-08 09:52:28,369 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-08 10:53:20] 2026-03-08 09:52:28,369 | INFO     | collected zombie processes
[2026-03-08 10:53:20] 2026-03-08 09:52:28,369 | INFO     | will attempt to kill all subprocesses of pid=25282
[2026-03-08 10:53:20] 2026-03-08 09:52:28,438 | INFO     | process IDs to be killed: [25282] (in reverse order)
[2026-03-08 10:53:20] 2026-03-08 09:52:28,643 | WARNING  | found no corresponding commands to process id(s)
[2026-03-08 10:53:20] 2026-03-08 09:52:28,643 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-08 10:53:20] 2026-03-08 09:52:28,645 | INFO     | did not find any defunct processes belonging to 25282
[2026-03-08 10:53:20] 2026-03-08 09:52:28,648 | INFO     | did not find any defunct processes belonging to 25282
[2026-03-08 10:53:20] 2026-03-08 09:52:28,649 | INFO     | ready for new job
[2026-03-08 10:53:20] 2026-03-08 09:52:28,649 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-08 10:53:20] 2026-03-08 09:52:28,651 | INFO     | **************************************
[2026-03-08 10:53:20] 2026-03-08 09:52:28,651 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-03-08 10:53:20] 2026-03-08 09:52:28,651 | INFO     | **************************************
[2026-03-08 10:53:20] 2026-03-08 09:52:28,651 | INFO     | 
[2026-03-08 10:53:20] 2026-03-08 09:52:28,652 | INFO     | pilot is running in a VM
[2026-03-08 10:53:20] 2026-03-08 09:52:28,652 | INFO     | architecture information:
[2026-03-08 10:53:20] 2026-03-08 09:52:28,652 | INFO     | executing command: cat /etc/os-release
[2026-03-08 10:53:20] 2026-03-08 09:52:28,767 | INFO     | cat /etc/os-release:
[2026-03-08 10:53:20] NAME="CentOS Linux"
[2026-03-08 10:53:20] VERSION="7 (Core)"
[2026-03-08 10:53:20] ID="centos"
[2026-03-08 10:53:20] ID_LIKE="rhel fedora"
[2026-03-08 10:53:20] VERSION_ID="7"
[2026-03-08 10:53:20] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-08 10:53:20] ANSI_COLOR="0;31"
[2026-03-08 10:53:20] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-08 10:53:20] HOME_URL="https://www.centos.org/"
[2026-03-08 10:53:20] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-08 10:53:20] 
[2026-03-08 10:53:20] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-08 10:53:20] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-08 10:53:20] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-08 10:53:20] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-08 10:53:20] 
[2026-03-08 10:53:20] 2026-03-08 09:52:28,767 | INFO     | **************************************
[2026-03-08 10:53:20] 2026-03-08 09:52:29,272 | INFO     | executing command: df -mP /var/lib/boinc/slots/5
[2026-03-08 10:53:20] 2026-03-08 09:52:29,524 | INFO     | sufficient remaining disk space (495122907136 B)
[2026-03-08 10:53:20] 2026-03-08 09:52:29,524 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-08 10:53:20] 2026-03-08 09:52:29,525 | INFO     | current server update state: UPDATING_FINAL
[2026-03-08 10:53:20] 2026-03-08 09:52:29,525 | INFO     | update_server=False
[2026-03-08 10:53:20] 2026-03-08 09:52:29,525 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-08 10:53:20] 2026-03-08 09:52:29,964 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-03-08 10:53:20] 2026-03-08 09:52:29,965 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-03-08 10:53:20] 2026-03-08 09:52:29,965 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-08 10:53:20] 2026-03-08 09:52:29,965 | INFO     | will abort loop
[2026-03-08 10:53:20] 2026-03-08 09:52:30,426 | INFO     | all job control threads have been joined
[2026-03-08 10:53:20] 2026-03-08 09:52:30,463 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-08 10:53:20] 2026-03-08 09:52:30,530 | INFO     | [job] retrieve thread has finished
[2026-03-08 10:53:20] 2026-03-08 09:52:30,569 | INFO     | all data control threads have been joined
[2026-03-08 10:53:20] 2026-03-08 09:52:30,594 | INFO     | all payload control threads have been joined
[2026-03-08 10:53:20] 2026-03-08 09:52:30,969 | INFO     | [job] job monitor thread has finished
[2026-03-08 10:53:20] 2026-03-08 09:52:31,104 | INFO     | [job] create_data_payload thread has finished
[2026-03-08 10:53:20] 2026-03-08 09:52:31,284 | INFO     | [payload] execute_payloads thread has finished
[2026-03-08 10:53:20] 2026-03-08 09:52:31,287 | INFO     | [data] copytool_in thread has finished
[2026-03-08 10:53:20] 2026-03-08 09:52:31,432 | INFO     | [job] control thread has finished
[2026-03-08 10:53:20] 2026-03-08 09:52:31,464 | INFO     | [job] validate thread has finished
[2026-03-08 10:53:20] 2026-03-08 09:52:31,473 | INFO     | [payload] validate_pre thread has finished
[2026-03-08 10:53:20] 2026-03-08 09:52:31,575 | INFO     | [data] control thread has finished
[2026-03-08 10:53:20] 2026-03-08 09:52:31,600 | INFO     | [payload] control thread has finished
[2026-03-08 10:53:20] 2026-03-08 09:52:31,777 | INFO     | [payload] failed_post thread has finished
[2026-03-08 10:53:20] 2026-03-08 09:52:31,786 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-08 10:53:20] 2026-03-08 09:52:31,855 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-08 10:53:20] 2026-03-08 09:52:32,098 | INFO     | [payload] validate_post thread has finished
[2026-03-08 10:53:20] 2026-03-08 09:52:32,303 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-08 10:53:20] 2026-03-08 09:52:32,470 | INFO     | [data] copytool_out thread has finished
[2026-03-08 10:53:20] 2026-03-08 09:52:33,309 | INFO     | [job] queue monitor thread has finished
[2026-03-08 10:53:20] 2026-03-08 09:52:35,864 | INFO     | [data] queue_monitor thread has finished
[2026-03-08 10:53:20] 2026-03-08 09:52:59,387 | INFO     | PID=20818 has CPU usage=3.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-03-08 10:53:20] 2026-03-08 09:52:59,388 | INFO     | .. there are 2 such processes running
[2026-03-08 10:53:20] 2026-03-08 09:52:59,388 | INFO     | found 0 job(s) in 20 queues
[2026-03-08 10:53:20] 2026-03-08 09:52:59,388 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-08 10:53:20] 2026-03-08 09:52:59,388 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-08 10:53:20] 2026-03-08 09:53:09,499 | INFO     | [monitor] cgroup control has ended
[2026-03-08 10:53:20] 2026-03-08 09:53:09,894 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140657078417216)>', '<ExcThread(monitor, started 140656404059904)>']
[2026-03-08 10:53:20] 2026-03-08 09:53:10,454 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-08 10:53:20] 2026-03-08 09:53:10,454 | INFO     | [monitor] control thread has ended
[2026-03-08 10:53:20] 2026-03-08 09:53:14,920 | INFO     | all workflow threads have been joined
[2026-03-08 10:53:20] 2026-03-08 09:53:14,920 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-08 10:53:20] 2026-03-08 09:53:14,921 | INFO     | traces error code: 0
[2026-03-08 10:53:20] 2026-03-08 09:53:14,921 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-08 10:53:20] 2026-03-08 09:53:15,287 [wrapper] ==== pilot stdout END ====
[2026-03-08 10:53:20] 2026-03-08 09:53:15,374 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-08 10:53:20] 2026-03-08 09:53:15,493 [wrapper] pilotpid: 20818
[2026-03-08 10:53:20] 2026-03-08 09:53:15,616 [wrapper] Pilot exit status: 0
[2026-03-08 10:53:20] 2026-03-08 09:53:16,188 [wrapper] pandaids: 7039173604
[2026-03-08 10:53:20] 2026-03-08 09:53:17,232 [wrapper] cleanup supervisor_pilot 31784 20819
[2026-03-08 10:53:20] 2026-03-08 09:53:17,307 [wrapper] Test setup, not cleaning
[2026-03-08 10:53:20] 2026-03-08 09:53:17,425 [wrapper] apfmon messages muted
[2026-03-08 10:53:20] 2026-03-08 09:53:17,485 [wrapper] ==== wrapper stdout END ====
[2026-03-08 10:53:20] 2026-03-08 09:53:17,616 [wrapper] ==== wrapper stderr END ====
[2026-03-08 10:53:20]  *** Error codes and diagnostics ***
[2026-03-08 10:53:20]     "exeErrorCode": 0,
[2026-03-08 10:53:20]     "exeErrorDiag": "",
[2026-03-08 10:53:20]     "pilotErrorCode": 0,
[2026-03-08 10:53:20]     "pilotErrorDiag": "",
[2026-03-08 10:53:20]  *** Listing of results directory ***
[2026-03-08 10:53:20] total 617340
[2026-03-08 10:53:20] -rw-r--r--. 1 boinc boinc    584627 Mar  7 18:04 pilot3.tar.gz
[2026-03-08 10:53:20] -rwx------. 1 boinc boinc     36322 Mar  7 18:07 runpilot2-wrapper.sh
[2026-03-08 10:53:20] -rw-r--r--. 1 boinc boinc      5111 Mar  7 18:08 queuedata.json
[2026-03-08 10:53:20] -rw-r--r--. 1 boinc boinc       100 Mar  8 06:53 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-08 10:53:20] -rwxr-xr-x. 1 boinc boinc      7986 Mar  8 06:53 run_atlas
[2026-03-08 10:53:20] -rw-r--r--. 1 boinc boinc       105 Mar  8 06:53 job.xml
[2026-03-08 10:53:20] -rw-r--r--. 1 boinc boinc      6390 Mar  8 06:53 init_data.xml
[2026-03-08 10:53:20] -rw-r--r--. 2 boinc boinc 440752081 Mar  8 06:53 EVNT.46701403._001247.pool.root.1
[2026-03-08 10:53:20] -rw-r--r--. 2 boinc boinc     15845 Mar  8 06:53 start_atlas.sh
[2026-03-08 10:53:20] drwxrwx--x. 2 boinc boinc        68 Mar  8 06:53 shared
[2026-03-08 10:53:20] -rw-r--r--. 2 boinc boinc    597960 Mar  8 06:53 input.tar.gz
[2026-03-08 10:53:20] -rw-r--r--. 1 boinc boinc         0 Mar  8 06:53 boinc_lockfile
[2026-03-08 10:53:20] -rw-r--r--. 1 boinc boinc      2563 Mar  8 06:53 pandaJob.out
[2026-03-08 10:53:20] -rw-------. 1 boinc boinc       415 Mar  8 06:59 workernode_map.json
[2026-03-08 10:53:20] -rw-------. 1 boinc boinc    999169 Mar  8 06:59 agis_schedconf.cvmfs.json
[2026-03-08 10:53:20] drwx------. 5 boinc boinc      4096 Mar  8 06:59 pilot3
[2026-03-08 10:53:20] -rw-------. 1 boinc boinc 182563360 Mar  8 10:51 HITS.48955010._012350.pool.root.1
[2026-03-08 10:53:20] -rw-r--r--. 1 boinc boinc       532 Mar  8 10:51 boinc_task_state.xml
[2026-03-08 10:53:20] -rw-------. 1 boinc boinc      1011 Mar  8 10:52 memory_monitor_summary.json
[2026-03-08 10:53:20] -rw-------. 1 boinc boinc        95 Mar  8 10:52 pilot_heartbeat.json
[2026-03-08 10:53:20] -rw-------. 1 boinc boinc   1521291 Mar  8 10:52 agis_ddmendpoints.agis.ALL.json
[2026-03-08 10:53:20] -rw-------. 1 boinc boinc    490590 Mar  8 10:52 log.48955010._012350.job.log.tgz.1
[2026-03-08 10:53:20] -rw-------. 1 boinc boinc      6321 Mar  8 10:52 heartbeat.json
[2026-03-08 10:53:20] -rw-r--r--. 1 boinc boinc        28 Mar  8 10:52 wrapper_checkpoint.txt
[2026-03-08 10:53:20] -rw-r--r--. 1 boinc boinc      8192 Mar  8 10:52 boinc_mmap_file
[2026-03-08 10:53:20] -rw-------. 1 boinc boinc      5066 Mar  8 10:53 pilotlog.txt
[2026-03-08 10:53:20] -rw-------. 1 boinc boinc   1968722 Mar  8 10:53 log.48955010._012350.job.log.1
[2026-03-08 10:53:20] -rw-------. 1 boinc boinc       357 Mar  8 10:53 output.list
[2026-03-08 10:53:20] -rw-r--r--. 1 boinc boinc       620 Mar  8 10:53 runtime_log
[2026-03-08 10:53:20] -rw-------. 1 boinc boinc   2478080 Mar  8 10:53 result.tar.gz
[2026-03-08 10:53:20] -rw-r--r--. 1 boinc boinc      8816 Mar  8 10:53 runtime_log.err
[2026-03-08 10:53:20] -rw-------. 1 boinc boinc       655 Mar  8 10:53 ATiKDmiIAJ9n9Rq4apOajLDm4fhM0noT9bVooX4SDmQCULDmAwNRLo.diag
[2026-03-08 10:53:20] -rw-r--r--. 1 boinc boinc     20718 Mar  8 10:53 stderr.txt
[2026-03-08 10:53:20] HITS file was successfully produced:
[2026-03-08 10:53:20] -rw-------. 1 boinc boinc 182563360 Mar  8 10:51 shared/HITS.pool.root.1
[2026-03-08 10:53:20]  *** Contents of shared directory: ***
[2026-03-08 10:53:20] total 611732
[2026-03-08 10:53:20] -rw-r--r--. 2 boinc boinc 440752081 Mar  8 06:53 ATLAS.root_0
[2026-03-08 10:53:20] -rw-r--r--. 2 boinc boinc     15845 Mar  8 06:53 start_atlas.sh
[2026-03-08 10:53:20] -rw-r--r--. 2 boinc boinc    597960 Mar  8 06:53 input.tar.gz
[2026-03-08 10:53:20] -rw-------. 1 boinc boinc 182563360 Mar  8 10:51 HITS.pool.root.1
[2026-03-08 10:53:20] -rw-------. 1 boinc boinc   2478080 Mar  8 10:53 result.tar.gz
10:53:21 (16835): run_atlas exited; CPU time 49245.729238
10:53:21 (16835): called boinc_finish(0)

</stderr_txt>
]]>

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