Stderr output

<core_client_version>8.3.0</core_client_version>
<![CDATA[
<stderr_txt>
15:46:16 (1976077): wrapper (7.7.26015): starting
15:46:16 (1976077): wrapper: running run_atlas (--nthreads 4)
[2026-03-07 15:46:16] Arguments: --nthreads 4
[2026-03-07 15:46:16] Threads: 4
[2026-03-07 15:46:16] Checking for CVMFS
[2026-03-07 15:46:16] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-07 15:46:17] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-07 15:46:17] Running cvmfs_config stat atlas.cern.ch
[2026-03-07 15:46:17] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-07 15:46:17] 2.13.3.0 21737 7208 51036 157013 1 50 8674162 102400000 1832 130560 15 5019485 99.989 248606 66 http://s1bnl-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
[2026-03-07 15:46:17] CVMFS is ok
[2026-03-07 15:46:17] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-07 15:46:17] Small home clusters do not require a local http proxy but it is suggested if
[2026-03-07 15:46:17] more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
[2026-03-07 15:46:17] Further information can be found at the LHC@home message board.
[2026-03-07 15:46:17] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-07 15:46:17] Checking for apptainer binary...
[2026-03-07 15:46:17] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-07 15:46:17] Running /usr/bin/apptainer --version
[2026-03-07 15:46:17] apptainer version 1.4.5
[2026-03-07 15:46:17] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-07 15:46:18] T7810-Ubuntu
[2026-03-07 15:46:18] apptainer works
[2026-03-07 15:46:18] Set ATHENA_PROC_NUMBER=4
[2026-03-07 15:46:18] Set ATHENA_CORE_NUMBER=4
[2026-03-07 15:46:18] Starting ATLAS job with PandaID=7039152457
[2026-03-07 15:46:18] Running command: /usr/bin/apptainer exec -B /cvmfs,/home/whitlerd/Desktop/BOINC/slots/12 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-07 18:39:24]  *** The last 200 lines of the pilot log: ***
[2026-03-07 18:39:24] 2026-03-07 23:38:50,572 | INFO     | time since job start (10333s) is within the limit (349056.0s)
[2026-03-07 18:39:24] 2026-03-07 23:38:51,022 | INFO     | job 7039152457 has state=finished
[2026-03-07 18:39:24] 2026-03-07 23:38:51,022 | INFO     | preparing for final server update for job 7039152457 in state='finished'
[2026-03-07 18:39:24] 2026-03-07 23:38:51,023 | INFO     | reading metadata from: /home/whitlerd/Desktop/BOINC/slots/12/PanDA_Pilot-7039152457/jobReport.json
[2026-03-07 18:39:24] 2026-03-07 23:38:51,025 | INFO     | added worker_node to metadata from /home/whitlerd/Desktop/BOINC/slots/12/workernode_map.json
[2026-03-07 18:39:24] 2026-03-07 23:38:51,026 | INFO     | this job has now completed (state=finished)
[2026-03-07 18:39:24] 2026-03-07 23:38:51,026 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-03-07 18:39:24] 2026-03-07 23:38:51,026 | INFO     | log transfer has been attempted: DONE
[2026-03-07 18:39:24] 2026-03-07 23:38:51,026 | INFO     | job 7039152457 has finished - writing final server update
[2026-03-07 18:39:24] 2026-03-07 23:38:51,026 | INFO     | total number of processed events: 400 (read)
[2026-03-07 18:39:24] 2026-03-07 23:38:51,040 | INFO     | using path: /home/whitlerd/Desktop/BOINC/slots/12/PanDA_Pilot-7039152457/memory_monitor_summary.json (trf name=prmon)
[2026-03-07 18:39:24] 2026-03-07 23:38:51,041 | INFO     | extracted standard info from prmon json
[2026-03-07 18:39:24] 2026-03-07 23:38:51,041 | INFO     | extracted standard memory fields from prmon json
[2026-03-07 18:39:24] 2026-03-07 23:38:51,041 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-03-07 18:39:24] 2026-03-07 23:38:51,042 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-03-07 18:39:24] 2026-03-07 23:38:51,042 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-03-07 18:39:24] 2026-03-07 23:38:51,045 | INFO     | fitting pss+swap vs Time
[2026-03-07 18:39:24] 2026-03-07 23:38:51,045 | INFO     | sum of square deviations: 1496660620.0
[2026-03-07 18:39:24] 2026-03-07 23:38:51,046 | INFO     | sum of deviations: 938179207.0000023
[2026-03-07 18:39:24] 2026-03-07 23:38:51,046 | INFO     | mean x: 1772921543.0
[2026-03-07 18:39:24] 2026-03-07 23:38:51,047 | INFO     | mean y: 2324716.3668639055
[2026-03-07 18:39:24] 2026-03-07 23:38:51,047 | INFO     | intersect: -1109028188.2648892
[2026-03-07 18:39:24] 2026-03-07 23:38:51,047 | INFO     | chi2: 1.3625127809651643
[2026-03-07 18:39:24] 2026-03-07 23:38:51,047 | INFO     | sum of square deviations: 1367709365.0
[2026-03-07 18:39:24] 2026-03-07 23:38:51,048 | INFO     | sum of deviations: 989908457.5000004
[2026-03-07 18:39:24] 2026-03-07 23:38:51,049 | INFO     | mean x: 1772921390.5
[2026-03-07 18:39:24] 2026-03-07 23:38:51,049 | INFO     | mean y: 2324777.5060975607
[2026-03-07 18:39:24] 2026-03-07 23:38:51,049 | INFO     | intersect: -1280864417.399072
[2026-03-07 18:39:24] 2026-03-07 23:38:51,049 | INFO     | chi2: 1.3628522488887242
[2026-03-07 18:39:24] 2026-03-07 23:38:51,049 | INFO     | current chi2=1.3628522488887242 (change=-0.024914843244224046 %)
[2026-03-07 18:39:24] 2026-03-07 23:38:51,049 | INFO     | right removable region: 163
[2026-03-07 18:39:24] 2026-03-07 23:38:51,050 | INFO     | sum of square deviations: 1367709365.0
[2026-03-07 18:39:24] 2026-03-07 23:38:51,051 | INFO     | sum of deviations: -17425244384.0
[2026-03-07 18:39:24] 2026-03-07 23:38:51,051 | INFO     | mean x: 1772921695.5
[2026-03-07 18:39:24] 2026-03-07 23:38:51,051 | INFO     | mean y: 2346015.2439024393
[2026-03-07 18:39:24] 2026-03-07 23:38:51,051 | INFO     | intersect: 22590181273.492012
[2026-03-07 18:39:24] 2026-03-07 23:38:51,051 | INFO     | chi2: 0.08440911975436448
[2026-03-07 18:39:24] 2026-03-07 23:38:51,051 | INFO     | current chi2=0.08440911975436448 (change=93.80489336073813 %)
[2026-03-07 18:39:24] 2026-03-07 23:38:51,052 | INFO     | sum of square deviations: 1246386160.0
[2026-03-07 18:39:24] 2026-03-07 23:38:51,053 | INFO     | sum of deviations: -13956179447.0
[2026-03-07 18:39:24] 2026-03-07 23:38:51,053 | INFO     | mean x: 1772921848.0
[2026-03-07 18:39:24] 2026-03-07 23:38:51,053 | INFO     | mean y: 2341647.176100629
[2026-03-07 18:39:24] 2026-03-07 23:38:51,053 | INFO     | intersect: 19854307474.680843
[2026-03-07 18:39:24] 2026-03-07 23:38:51,053 | INFO     | chi2: 0.07869533919134666
[2026-03-07 18:39:24] 2026-03-07 23:38:51,053 | INFO     | current chi2=0.07869533919134666 (change=6.7691507501147425 %)
[2026-03-07 18:39:24] 2026-03-07 23:38:51,053 | INFO     | left removable region: 20
[2026-03-07 18:39:24] 2026-03-07 23:38:51,054 | INFO     | sum of square deviations: 906703512.0
[2026-03-07 18:39:24] 2026-03-07 23:38:51,054 | INFO     | sum of deviations: -5636990540.999999
[2026-03-07 18:39:24] 2026-03-07 23:38:51,055 | INFO     | mean x: 1772921970.0
[2026-03-07 18:39:24] 2026-03-07 23:38:51,055 | INFO     | mean y: 2330731.797202797
[2026-03-07 18:39:24] 2026-03-07 23:38:51,055 | INFO     | intersect: 11024615571.939175
[2026-03-07 18:39:24] 2026-03-07 23:38:51,055 | INFO     | chi2: 0.04806596860486053
[2026-03-07 18:39:24] 2026-03-07 23:38:51,055 | INFO     | current memory leak: -6.22 B/s (using 143 data points, chi2=0.05)
[2026-03-07 18:39:24] 2026-03-07 23:38:51,056 | INFO     | could have reported an average CPU frequency of 2731 MHz (9 samples)
[2026-03-07 18:39:24] 2026-03-07 23:38:51,056 | INFO     | ..............................
[2026-03-07 18:39:24] 2026-03-07 23:38:51,056 | INFO     | . Timing measurements:
[2026-03-07 18:39:24] 2026-03-07 23:38:51,056 | INFO     | . get job = 0 s
[2026-03-07 18:39:24] 2026-03-07 23:38:51,056 | INFO     | . initial setup = 7 s
[2026-03-07 18:39:24] 2026-03-07 23:38:51,056 | INFO     | . payload setup = 5 s
[2026-03-07 18:39:24] 2026-03-07 23:38:51,056 | INFO     | . stage-in = 0 s
[2026-03-07 18:39:24] 2026-03-07 23:38:51,057 | INFO     | . payload execution = 10310 s
[2026-03-07 18:39:24] 2026-03-07 23:38:51,057 | INFO     | . stage-out = 0 s
[2026-03-07 18:39:24] 2026-03-07 23:38:51,057 | INFO     | . log creation = 0 s
[2026-03-07 18:39:24] 2026-03-07 23:38:51,057 | INFO     | ..............................
[2026-03-07 18:39:24] 2026-03-07 23:38:51,151 | INFO     | 
[2026-03-07 18:39:24] 2026-03-07 23:38:51,151 | INFO     | job summary report
[2026-03-07 18:39:24] 2026-03-07 23:38:51,151 | INFO     | --------------------------------------------------
[2026-03-07 18:39:24] 2026-03-07 23:38:51,151 | INFO     | PanDA job id: 7039152457
[2026-03-07 18:39:24] 2026-03-07 23:38:51,151 | INFO     | task id: 48955006
[2026-03-07 18:39:24] 2026-03-07 23:38:51,152 | INFO     | errors: (none)
[2026-03-07 18:39:24] 2026-03-07 23:38:51,152 | INFO     | status: LOG_TRANSFER = DONE 
[2026-03-07 18:39:24] 2026-03-07 23:38:51,152 | INFO     | pilot state: finished 
[2026-03-07 18:39:24] 2026-03-07 23:38:51,152 | INFO     | transexitcode: 0
[2026-03-07 18:39:24] 2026-03-07 23:38:51,152 | INFO     | exeerrorcode: 0
[2026-03-07 18:39:24] 2026-03-07 23:38:51,152 | INFO     | exeerrordiag: 
[2026-03-07 18:39:24] 2026-03-07 23:38:51,152 | INFO     | exitcode: 0
[2026-03-07 18:39:24] 2026-03-07 23:38:51,152 | INFO     | exitmsg: OK
[2026-03-07 18:39:24] 2026-03-07 23:38:51,152 | INFO     | cpuconsumptiontime: 40209 s
[2026-03-07 18:39:24] 2026-03-07 23:38:51,152 | INFO     | nevents: 400
[2026-03-07 18:39:24] 2026-03-07 23:38:51,153 | INFO     | neventsw: 0
[2026-03-07 18:39:24] 2026-03-07 23:38:51,153 | INFO     | pid: 1985217
[2026-03-07 18:39:24] 2026-03-07 23:38:51,153 | INFO     | pgrp: 1985217
[2026-03-07 18:39:24] 2026-03-07 23:38:51,153 | INFO     | corecount: 4
[2026-03-07 18:39:24] 2026-03-07 23:38:51,153 | INFO     | event service: False
[2026-03-07 18:39:24] 2026-03-07 23:38:51,153 | INFO     | sizes: {0: 2295387, 1: 2295848, 11: 2295848, 10320: 2324567, 10321: 2333595, 10322: 2333651, 10323: 2334037}
[2026-03-07 18:39:24] 2026-03-07 23:38:51,153 | INFO     | --------------------------------------------------
[2026-03-07 18:39:24] 2026-03-07 23:38:51,153 | INFO     | 
[2026-03-07 18:39:24] 2026-03-07 23:38:51,153 | INFO     | executing command: ls -lF /home/whitlerd/Desktop/BOINC/slots/12
[2026-03-07 18:39:24] 2026-03-07 23:38:51,180 | INFO     | queue jobs had 0 job(s) [purged]
[2026-03-07 18:39:24] 2026-03-07 23:38:51,181 | INFO     | queue payloads had 0 job(s) [purged]
[2026-03-07 18:39:24] 2026-03-07 23:38:51,181 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-07 18:39:24] 2026-03-07 23:38:51,181 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-07 18:39:24] 2026-03-07 23:38:51,181 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-07 18:39:24] 2026-03-07 23:38:51,181 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-07 18:39:24] 2026-03-07 23:38:51,181 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-07 18:39:24] 2026-03-07 23:38:51,182 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-07 18:39:24] 2026-03-07 23:38:51,182 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-07 18:39:24] 2026-03-07 23:38:51,182 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-07 18:39:24] 2026-03-07 23:38:51,182 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-07 18:39:24] 2026-03-07 23:38:51,182 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-07 18:39:24] 2026-03-07 23:38:51,182 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-07 18:39:24] 2026-03-07 23:38:51,182 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-07 18:39:24] 2026-03-07 23:38:51,182 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-07 18:39:24] 2026-03-07 23:38:51,183 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-07 18:39:24] 2026-03-07 23:38:51,183 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-07 18:39:24] 2026-03-07 23:38:51,183 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-07 18:39:24] 2026-03-07 23:38:51,183 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-07 18:39:24] 2026-03-07 23:38:51,183 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-07 18:39:24] 2026-03-07 23:38:51,183 | INFO     | job 7039152457 has completed (purged errors)
[2026-03-07 18:39:24] 2026-03-07 23:38:51,184 | INFO     | overall cleanup function is called
[2026-03-07 18:39:24] 2026-03-07 23:38:52,192 | INFO     | --- collectZombieJob: --- 10, [1985217]
[2026-03-07 18:39:24] 2026-03-07 23:38:52,192 | INFO     | zombie collector waiting for pid 1985217
[2026-03-07 18:39:24] 2026-03-07 23:38:52,192 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-07 18:39:24] 2026-03-07 23:38:52,193 | INFO     | collected zombie processes
[2026-03-07 18:39:24] 2026-03-07 23:38:52,193 | INFO     | will attempt to kill all subprocesses of pid=1985217
[2026-03-07 18:39:24] 2026-03-07 23:38:52,527 | INFO     | process IDs to be killed: [1985217] (in reverse order)
[2026-03-07 18:39:24] 2026-03-07 23:38:52,619 | WARNING  | found no corresponding commands to process id(s)
[2026-03-07 18:39:24] 2026-03-07 23:38:52,619 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-07 18:39:24] 2026-03-07 23:38:52,628 | INFO     | did not find any defunct processes belonging to 1985217
[2026-03-07 18:39:24] 2026-03-07 23:38:52,636 | INFO     | did not find any defunct processes belonging to 1985217
[2026-03-07 18:39:24] 2026-03-07 23:38:52,636 | INFO     | ready for new job
[2026-03-07 18:39:24] 2026-03-07 23:38:52,637 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-07 18:39:24] 2026-03-07 23:38:52,639 | INFO     | **************************************
[2026-03-07 18:39:24] 2026-03-07 23:38:52,639 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-03-07 18:39:24] 2026-03-07 23:38:52,639 | INFO     | **************************************
[2026-03-07 18:39:24] 2026-03-07 23:38:52,639 | INFO     | 
[2026-03-07 18:39:24] 2026-03-07 23:38:52,644 | INFO     | architecture information:
[2026-03-07 18:39:24] 2026-03-07 23:38:52,644 | INFO     | executing command: cat /etc/os-release
[2026-03-07 18:39:24] 2026-03-07 23:38:52,663 | INFO     | cat /etc/os-release:
[2026-03-07 18:39:24] NAME="CentOS Linux"
[2026-03-07 18:39:24] VERSION="7 (Core)"
[2026-03-07 18:39:24] ID="centos"
[2026-03-07 18:39:24] ID_LIKE="rhel fedora"
[2026-03-07 18:39:24] VERSION_ID="7"
[2026-03-07 18:39:24] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-07 18:39:24] ANSI_COLOR="0;31"
[2026-03-07 18:39:24] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-07 18:39:24] HOME_URL="https://www.centos.org/"
[2026-03-07 18:39:24] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-07 18:39:24] 
[2026-03-07 18:39:24] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-07 18:39:24] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-07 18:39:24] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-07 18:39:24] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-07 18:39:24] 
[2026-03-07 18:39:24] 2026-03-07 23:38:52,663 | INFO     | **************************************
[2026-03-07 18:39:24] 2026-03-07 23:38:53,166 | INFO     | executing command: df -mP /home/whitlerd/Desktop/BOINC/slots/12
[2026-03-07 18:39:24] 2026-03-07 23:38:53,187 | INFO     | sufficient remaining disk space (399357509632 B)
[2026-03-07 18:39:24] 2026-03-07 23:38:53,188 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-07 18:39:24] 2026-03-07 23:38:53,188 | INFO     | current server update state: UPDATING_FINAL
[2026-03-07 18:39:24] 2026-03-07 23:38:53,188 | INFO     | update_server=False
[2026-03-07 18:39:24] 2026-03-07 23:38:53,188 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-07 18:39:24] 2026-03-07 23:38:53,365 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-07 18:39:24] 2026-03-07 23:38:53,365 | INFO     | aborting loop
[2026-03-07 18:39:24] 2026-03-07 23:38:53,386 | INFO     | [monitor] cgroup control has ended
[2026-03-07 18:39:24] 2026-03-07 23:38:53,717 | INFO     | all data control threads have been joined
[2026-03-07 18:39:24] 2026-03-07 23:38:53,721 | INFO     | all job control threads have been joined
[2026-03-07 18:39:24] 2026-03-07 23:38:53,919 | INFO     | all payload control threads have been joined
[2026-03-07 18:39:24] 2026-03-07 23:38:54,193 | INFO     | [job] retrieve thread has finished
[2026-03-07 18:39:24] 2026-03-07 23:38:54,282 | INFO     | job.realtimelogging is not enabled
[2026-03-07 18:39:24] 2026-03-07 23:38:54,341 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-07 18:39:24] 2026-03-07 23:38:54,371 | INFO     | [job] job monitor thread has finished
[2026-03-07 18:39:24] 2026-03-07 23:38:54,404 | INFO     | [job] validate thread has finished
[2026-03-07 18:39:24] 2026-03-07 23:38:54,648 | INFO     | [payload] failed_post thread has finished
[2026-03-07 18:39:24] 2026-03-07 23:38:54,686 | INFO     | [job] create_data_payload thread has finished
[2026-03-07 18:39:24] 2026-03-07 23:38:54,722 | INFO     | [data] control thread has finished
[2026-03-07 18:39:24] 2026-03-07 23:38:54,726 | INFO     | [job] control thread has finished
[2026-03-07 18:39:24] 2026-03-07 23:38:54,781 | INFO     | [payload] validate_pre thread has finished
[2026-03-07 18:39:24] 2026-03-07 23:38:54,813 | INFO     | [payload] execute_payloads thread has finished
[2026-03-07 18:39:24] 2026-03-07 23:38:54,924 | INFO     | [payload] control thread has finished
[2026-03-07 18:39:24] 2026-03-07 23:38:54,968 | INFO     | [data] copytool_in thread has finished
[2026-03-07 18:39:24] 2026-03-07 23:38:55,287 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-07 18:39:24] 2026-03-07 23:38:55,314 | INFO     | [payload] validate_post thread has finished
[2026-03-07 18:39:24] 2026-03-07 23:38:56,162 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-07 18:39:24] 2026-03-07 23:38:56,347 | INFO     | [data] copytool_out thread has finished
[2026-03-07 18:39:24] 2026-03-07 23:38:56,472 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-07 18:39:24] 2026-03-07 23:38:57,167 | INFO     | [job] queue monitor thread has finished
[2026-03-07 18:39:24] 2026-03-07 23:39:00,477 | INFO     | [data] queue_monitor thread has finished
[2026-03-07 18:39:24] 2026-03-07 23:39:01,251 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 137113888888640)>', '<ExcThread(monitor, started 137113383192320)>']
[2026-03-07 18:39:24] 2026-03-07 23:39:06,276 | INFO     | all workflow threads have been joined
[2026-03-07 18:39:24] 2026-03-07 23:39:06,276 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-07 18:39:24] 2026-03-07 23:39:06,276 | INFO     | traces error code: 0
[2026-03-07 18:39:24] 2026-03-07 23:39:06,277 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-07 18:39:24] 2026-03-07 23:39:24,027 | INFO     | PID=1980452 has CPU usage=6.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-03-07 18:39:24] 2026-03-07 23:39:24,027 | INFO     | .. there are 4 such processes running
[2026-03-07 18:39:24] 2026-03-07 23:39:24,028 | INFO     | found 0 job(s) in 20 queues
[2026-03-07 18:39:24] 2026-03-07 23:39:24,028 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-07 18:39:24] 2026-03-07 23:39:24,028 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-07 18:39:24] 2026-03-07 23:39:24,028 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-07 18:39:24] 2026-03-07 23:39:24,029 | INFO     | [monitor] control thread has ended
[2026-03-07 18:39:24] 2026-03-07 23:39:24,166 [wrapper] ==== pilot stdout END ====
[2026-03-07 18:39:24] 2026-03-07 23:39:24,169 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-07 18:39:24] 2026-03-07 23:39:24,171 [wrapper] pilotpid: 1980452
[2026-03-07 18:39:24] 2026-03-07 23:39:24,174 [wrapper] Pilot exit status: 0
[2026-03-07 18:39:24] 2026-03-07 23:39:24,190 [wrapper] pandaids: 7039152457
[2026-03-07 18:39:24] 2026-03-07 23:39:24,241 [wrapper] cleanup supervisor_pilot 2037334 1980453
[2026-03-07 18:39:24] 2026-03-07 23:39:24,245 [wrapper] Test setup, not cleaning
[2026-03-07 18:39:24] 2026-03-07 23:39:24,251 [wrapper] apfmon messages muted
[2026-03-07 18:39:24] 2026-03-07 23:39:24,253 [wrapper] ==== wrapper stdout END ====
[2026-03-07 18:39:24] 2026-03-07 23:39:24,255 [wrapper] ==== wrapper stderr END ====
[2026-03-07 18:39:24]  *** Error codes and diagnostics ***
[2026-03-07 18:39:24]     "exeErrorCode": 0,
[2026-03-07 18:39:24]     "exeErrorDiag": "",
[2026-03-07 18:39:24]     "pilotErrorCode": 0,
[2026-03-07 18:39:24]     "pilotErrorDiag": "",
[2026-03-07 18:39:24]  *** Listing of results directory ***
[2026-03-07 18:39:24] total 610360
[2026-03-07 18:39:24] -rw-r--r-- 1 whitlerd whitlerd      5111 Mar  7 11:24 queuedata.json
[2026-03-07 18:39:24] -rwx------ 1 whitlerd whitlerd     36322 Mar  7 11:24 runpilot2-wrapper.sh
[2026-03-07 18:39:24] -rw-r--r-- 1 whitlerd whitlerd    584627 Mar  7 11:25 pilot3.tar.gz
[2026-03-07 18:39:24] -rw-rw-r-- 1 whitlerd whitlerd       100 Mar  7 15:46 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-07 18:39:24] -rwxr-xr-x 1 whitlerd whitlerd      7986 Mar  7 15:46 run_atlas
[2026-03-07 18:39:24] -rw-rw-r-- 1 whitlerd whitlerd       105 Mar  7 15:46 job.xml
[2026-03-07 18:39:24] -rw-r--r-- 2 whitlerd whitlerd 440519316 Mar  7 15:46 EVNT.46701403._000353.pool.root.1
[2026-03-07 18:39:24] -rw-r--r-- 2 whitlerd whitlerd     15845 Mar  7 15:46 start_atlas.sh
[2026-03-07 18:39:24] drwxrwx--x 2 whitlerd whitlerd      4096 Mar  7 15:46 shared
[2026-03-07 18:39:24] -rw-r--r-- 2 whitlerd whitlerd    597953 Mar  7 15:46 input.tar.gz
[2026-03-07 18:39:24] -rw-rw-r-- 1 whitlerd whitlerd         0 Mar  7 15:46 boinc_setup_complete
[2026-03-07 18:39:24] -rw-rw-r-- 1 whitlerd whitlerd      9127 Mar  7 15:46 init_data.xml
[2026-03-07 18:39:24] -rw-rw-r-- 1 whitlerd whitlerd         0 Mar  7 15:46 boinc_lockfile
[2026-03-07 18:39:24] -rw-rw-r-- 1 whitlerd whitlerd      2564 Mar  7 15:46 pandaJob.out
[2026-03-07 18:39:24] -rw------- 1 whitlerd whitlerd    999169 Mar  7 15:46 agis_schedconf.cvmfs.json
[2026-03-07 18:39:24] -rw------- 1 whitlerd whitlerd   1521291 Mar  7 15:46 agis_ddmendpoints.agis.ALL.json
[2026-03-07 18:39:24] -rw------- 1 whitlerd whitlerd       434 Mar  7 15:46 workernode_map.json
[2026-03-07 18:39:24] drwx------ 5 whitlerd whitlerd      4096 Mar  7 15:46 pilot3
[2026-03-07 18:39:24] -rw------- 1 whitlerd whitlerd 176822776 Mar  7 18:38 HITS.48955006._017653.pool.root.1
[2026-03-07 18:39:24] -rw-rw-r-- 1 whitlerd whitlerd       531 Mar  7 18:38 boinc_task_state.xml
[2026-03-07 18:39:24] -rw------- 1 whitlerd whitlerd      1028 Mar  7 18:38 memory_monitor_summary.json
[2026-03-07 18:39:24] -rw------- 1 whitlerd whitlerd    388194 Mar  7 18:38 log.48955006._017653.job.log.tgz.1
[2026-03-07 18:39:24] -rw------- 1 whitlerd whitlerd      6346 Mar  7 18:38 heartbeat.json
[2026-03-07 18:39:24] -rw-rw-r-- 1 whitlerd whitlerd        28 Mar  7 18:39 wrapper_checkpoint.txt
[2026-03-07 18:39:24] -rw------- 1 whitlerd whitlerd       822 Mar  7 18:39 pilotlog.txt
[2026-03-07 18:39:24] -rw------- 1 whitlerd whitlerd        95 Mar  7 18:39 pilot_heartbeat.json
[2026-03-07 18:39:24] -rw------- 1 whitlerd whitlerd   1478326 Mar  7 18:39 log.48955006._017653.job.log.1
[2026-03-07 18:39:24] -rw------- 1 whitlerd whitlerd       357 Mar  7 18:39 output.list
[2026-03-07 18:39:24] -rw-rw-r-- 1 whitlerd whitlerd       620 Mar  7 18:39 runtime_log
[2026-03-07 18:39:24] -rw------- 1 whitlerd whitlerd   1884160 Mar  7 18:39 result.tar.gz
[2026-03-07 18:39:24] -rw-rw-r-- 1 whitlerd whitlerd      8192 Mar  7 18:39 boinc_mmap_file
[2026-03-07 18:39:24] -rw-rw-r-- 1 whitlerd whitlerd      9036 Mar  7 18:39 runtime_log.err
[2026-03-07 18:39:24] -rw------- 1 whitlerd whitlerd       650 Mar  7 18:39 NvONDmgd9I9n9Rq4apOajLDm4fhM0noT9bVooX4SDmHzTLDmobeuum.diag
[2026-03-07 18:39:24] -rw-rw-r-- 1 whitlerd whitlerd     21385 Mar  7 18:39 stderr.txt
[2026-03-07 18:39:24] HITS file was successfully produced:
[2026-03-07 18:39:24] -rw------- 1 whitlerd whitlerd 176822776 Mar  7 18:38 shared/HITS.pool.root.1
[2026-03-07 18:39:24]  *** Contents of shared directory: ***
[2026-03-07 18:39:24] total 605324
[2026-03-07 18:39:24] -rw-r--r-- 2 whitlerd whitlerd 440519316 Mar  7 15:46 ATLAS.root_0
[2026-03-07 18:39:24] -rw-r--r-- 2 whitlerd whitlerd     15845 Mar  7 15:46 start_atlas.sh
[2026-03-07 18:39:24] -rw-r--r-- 2 whitlerd whitlerd    597953 Mar  7 15:46 input.tar.gz
[2026-03-07 18:39:24] -rw------- 1 whitlerd whitlerd 176822776 Mar  7 18:38 HITS.pool.root.1
[2026-03-07 18:39:24] -rw------- 1 whitlerd whitlerd   1884160 Mar  7 18:39 result.tar.gz
18:39:25 (1976077): run_atlas exited; CPU time 40602.884754
18:39:25 (1976077): called boinc_finish(0)

</stderr_txt>
]]>

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