Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
16:41:56 (773037): wrapper (7.7.26015): starting
16:41:56 (773037): wrapper: running run_atlas (--nthreads 12)
[2026-03-07 16:41:56] Arguments: --nthreads 12
[2026-03-07 16:41:56] Threads: 12
[2026-03-07 16:41:56] Checking for CVMFS
[2026-03-07 16:41:57] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-07 16:41:58] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-07 16:41:58] Running cvmfs_config stat atlas.cern.ch
[2026-03-07 16:41:59] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-07 16:41:59] 2.11.5.0 3857663 139380 356464 157021 0 438 34455090 45568000 23088 130560 0 807172998 99.804 484622261 17402 http://cvmfs-s1bnl.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://206.12.9.163:3129 1
[2026-03-07 16:41:59] CVMFS is ok
[2026-03-07 16:41:59] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-07 16:41:59] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-07 16:41:59] Further information can be found at the LHC@home message board.
[2026-03-07 16:41:59] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-07 16:41:59] Checking for apptainer binary...
[2026-03-07 16:41:59] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-07 16:41:59] Running /usr/bin/apptainer --version
[2026-03-07 16:41:59] apptainer version 1.4.1-1.el9
[2026-03-07 16:41:59] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-07 16:42:00] wns0075.triumf.lcg
[2026-03-07 16:42:00] apptainer works
[2026-03-07 16:42:00] Set ATHENA_PROC_NUMBER=12
[2026-03-07 16:42:00] Set ATHENA_CORE_NUMBER=12
[2026-03-07 16:42:01] Starting ATLAS job with PandaID=7039266634
[2026-03-07 16:42:01] Running command: /usr/bin/apptainer exec -B /cvmfs,/home/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-07 16:48:21]  *** The last 200 lines of the pilot log: ***
[2026-03-07 16:48:21] 2026-03-08 00:47:45,410 | INFO     | ..............................
[2026-03-07 16:48:21] 2026-03-08 00:47:45,410 | INFO     | . Timing measurements:
[2026-03-07 16:48:21] 2026-03-08 00:47:45,410 | INFO     | . get job = 0 s
[2026-03-07 16:48:21] 2026-03-08 00:47:45,410 | INFO     | . initial setup = 27 s
[2026-03-07 16:48:21] 2026-03-08 00:47:45,410 | INFO     | . payload setup = 37 s
[2026-03-07 16:48:21] 2026-03-08 00:47:45,410 | INFO     | . stage-in = 0 s
[2026-03-07 16:48:21] 2026-03-08 00:47:45,410 | INFO     | . payload execution = 107 s
[2026-03-07 16:48:21] 2026-03-08 00:47:45,410 | INFO     | . stage-out = 2 s
[2026-03-07 16:48:21] 2026-03-08 00:47:45,410 | INFO     | . log creation = 0 s
[2026-03-07 16:48:21] 2026-03-08 00:47:45,410 | INFO     | ..............................
[2026-03-07 16:48:21] 2026-03-08 00:47:45,411 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2026-03-07 16:48:21] 2026-03-08 00:47:45,411 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-7039266634/pilotlog.txt
[2026-03-07 16:48:21] 2026-03-08 00:47:45,603 | WARNING  | detected the following tail of warning/fatal messages in the pilot log:
[2026-03-07 16:48:21] - Log from pilotlog.txt -
[2026-03-07 16:48:21] 2026-03-08 00:47:45,382 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-7039266634/memory_monitor_summary.json (trf name=prmon)
[2026-03-07 16:48:21] 2026-03-08 00:47:45,383 | INFO     | extracted standard info from prmon json
[2026-03-07 16:48:21] 2026-03-08 00:47:45,383 | INFO     | extracted standard memory fields from prmon json
[2026-03-07 16:48:21] 2026-03-08 00:47:45,383 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-03-07 16:48:21] 2026-03-08 00:47:45,384 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-03-07 16:48:21] 2026-03-08 00:47:45,384 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-03-07 16:48:21] 2026-03-08 00:47:45,385 | WARNING  | wrong length of table data, x=[1772930671.0, 1772930732.0], y=[3353.0, 470003.0] (must be same and length>=4)
[2026-03-07 16:48:21] 2026-03-08 00:47:45,409 | INFO     | could have reported an average CPU frequency of 1357 MHz (4 samples)
[2026-03-07 16:48:21] 2026-03-08 00:47:45,410 | INFO     | ..............................
[2026-03-07 16:48:21] 2026-03-08 00:47:45,410 | INFO     | . Timing measurements:
[2026-03-07 16:48:21] 2026-03-08 00:47:45,410 | INFO     | . get job = 0 s
[2026-03-07 16:48:21] 2026-03-08 00:47:45,410 | INFO     | . initial setup = 27 s
[2026-03-07 16:48:21] 2026-03-08 00:47:45,410 | INFO     | . payload setup = 37 s
[2026-03-07 16:48:21] 2026-03-08 00:47:45,410 | INFO     | . stage-in = 0 s
[2026-03-07 16:48:21] 2026-03-08 00:47:45,410 | INFO     | . payload execution = 107 s
[2026-03-07 16:48:21] 2026-03-08 00:47:45,410 | INFO     | . stage-out = 2 s
[2026-03-07 16:48:21] 2026-03-08 00:47:45,410 | INFO     | . log creation = 0 s
[2026-03-07 16:48:21] 2026-03-08 00:47:45,410 | INFO     | ..............................
[2026-03-07 16:48:21] 2026-03-08 00:47:45,411 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2026-03-07 16:48:21] 2026-03-08 00:47:45,411 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-7039266634/pilotlog.txt
[2026-03-07 16:48:21] 2026-03-08 00:47:45,603 | WARNING  | 
[2026-03-07 16:48:21] [begin log extracts]
[2026-03-07 16:48:21] - Log from pilotlog.txt -
[2026-03-07 16:48:21] 2026-03-08 00:47:45,382 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-7039266634/memory_monitor_summary.json (trf name=prmon)
[2026-03-07 16:48:21] 2026-03-08 00:47:45,383 | INFO     | extracted standard info from prmon json
[2026-03-07 16:48:21] 2026-03-08 00:47:45,383 | INFO     | extracted standard memory fields from prmon json
[2026-03-07 16:48:21] 2026-03-08 00:47:45,383 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-03-07 16:48:21] 2026-03-08 00:47:45,384 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-03-07 16:48:21] 2026-03-08 00:47:45,384 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-03-07 16:48:21] 2026-03-08 00:47:45,385 | WARNING  | wrong length of table data, x=[1772930671.0, 1772930732.0], y=[3353.0, 470003.0] (must be same and length>=4)
[2026-03-07 16:48:21] 2026-03-08 00:47:45,409 | INFO     | could have reported an average CPU frequency of 1357 MHz (4 samples)
[2026-03-07 16:48:21] 2026-03-08 00:47:45,410 | INFO     | ..............................
[2026-03-07 16:48:21] 2026-03-08 00:47:45,410 | INFO     | . Timing measurements:
[2026-03-07 16:48:21] 2026-03-08 00:47:45,410 | INFO     | . get job = 0 s
[2026-03-07 16:48:21] 2026-03-08 00:47:45,410 | INFO     | . initial setup = 27 s
[2026-03-07 16:48:21] 2026-03-08 00:47:45,410 | INFO     | . payload setup = 37 s
[2026-03-07 16:48:21] 2026-03-08 00:47:45,410 | INFO     | . stage-in = 0 s
[2026-03-07 16:48:21] 2026-03-08 00:47:45,410 | INFO     | . payload execution = 107 s
[2026-03-07 16:48:21] 2026-03-08 00:47:45,410 | INFO     | . stage-out = 2 s
[2026-03-07 16:48:21] 2026-03-08 00:47:45,410 | INFO     | . log creation = 0 s
[2026-03-07 16:48:21] 2026-03-08 00:47:45,410 | INFO     | ..............................
[2026-03-07 16:48:21] 2026-03-08 00:47:45,411 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2026-03-07 16:48:21] 2026-03-08 00:47:45,411 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-7039266634/pilotlog.txt
[2026-03-07 16:48:21] [end log extracts]
[2026-03-07 16:48:21] 2026-03-08 00:47:45,603 | WARNING  | pilotErrorCodes = [1305] (will report primary/first error code)
[2026-03-07 16:48:21] 2026-03-08 00:47:45,604 | WARNING  | pilotErrorDiags = ['Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return c
[2026-03-07 16:48:21] 2026-03-08 00:47:46,006 | INFO     | 
[2026-03-07 16:48:21] 2026-03-08 00:47:46,006 | INFO     | job summary report
[2026-03-07 16:48:21] 2026-03-08 00:47:46,007 | INFO     | --------------------------------------------------
[2026-03-07 16:48:21] 2026-03-08 00:47:46,007 | INFO     | PanDA job id: 7039266634
[2026-03-07 16:48:21] 2026-03-08 00:47:46,007 | INFO     | task id: 48955006
[2026-03-07 16:48:21] 2026-03-08 00:47:46,007 | INFO     | error 1/1: 1305: Failed to execute payload:PyJobTransforms.transform.execute 2026-03-07 16:45:31,133 CRITICAL Transform executor raised TransformValidationExceptio
[2026-03-07 16:48:21] 2026-03-08 00:47:46,007 | INFO     | status: LOG_TRANSFER = DONE 
[2026-03-07 16:48:21] 2026-03-08 00:47:46,007 | INFO     | pilot state: failed 
[2026-03-07 16:48:21] 2026-03-08 00:47:46,007 | INFO     | transexitcode: 65
[2026-03-07 16:48:21] 2026-03-08 00:47:46,007 | INFO     | exeerrorcode: 65
[2026-03-07 16:48:21] 2026-03-08 00:47:46,007 | INFO     | exeerrordiag: Non-zero return code from EVNTtoHITS (1)
[2026-03-07 16:48:21] 2026-03-08 00:47:46,007 | INFO     | exitcode: 65
[2026-03-07 16:48:21] 2026-03-08 00:47:46,007 | INFO     | exitmsg: Non-zero return code from EVNTtoHITS (1)
[2026-03-07 16:48:21] 2026-03-08 00:47:46,008 | INFO     | cpuconsumptiontime: 25 s
[2026-03-07 16:48:21] 2026-03-08 00:47:46,008 | INFO     | nevents: 0
[2026-03-07 16:48:21] 2026-03-08 00:47:46,008 | INFO     | neventsw: 0
[2026-03-07 16:48:21] 2026-03-08 00:47:46,008 | INFO     | pid: 786211
[2026-03-07 16:48:21] 2026-03-08 00:47:46,008 | INFO     | pgrp: 786211
[2026-03-07 16:48:21] 2026-03-08 00:47:46,008 | INFO     | corecount: 12
[2026-03-07 16:48:21] 2026-03-08 00:47:46,008 | INFO     | event service: False
[2026-03-07 16:48:21] 2026-03-08 00:47:46,008 | INFO     | sizes: {0: 2294715, 1: 2295397, 2: 2295397, 3: 2295397, 4: 2295858, 14: 2295886, 150: 2319368, 151: 2319344, 154: 2323692, 156: 2323720, 272: 2323886}
[2026-03-07 16:48:21] 2026-03-08 00:47:46,008 | INFO     | --------------------------------------------------
[2026-03-07 16:48:21] 2026-03-08 00:47:46,008 | INFO     | 
[2026-03-07 16:48:21] 2026-03-08 00:47:46,008 | INFO     | executing command: ls -lF /home/boinc/slots/0
[2026-03-07 16:48:21] 2026-03-08 00:47:46,177 | INFO     | queue jobs had 0 job(s) [purged]
[2026-03-07 16:48:21] 2026-03-08 00:47:46,177 | INFO     | queue payloads had 0 job(s) [purged]
[2026-03-07 16:48:21] 2026-03-08 00:47:46,177 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-07 16:48:21] 2026-03-08 00:47:46,177 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-07 16:48:21] 2026-03-08 00:47:46,178 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-07 16:48:21] 2026-03-08 00:47:46,178 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-07 16:48:21] 2026-03-08 00:47:46,178 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-07 16:48:21] 2026-03-08 00:47:46,178 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-07 16:48:21] 2026-03-08 00:47:46,178 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-07 16:48:21] 2026-03-08 00:47:46,178 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-07 16:48:21] 2026-03-08 00:47:46,178 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-07 16:48:21] 2026-03-08 00:47:46,178 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-07 16:48:21] 2026-03-08 00:47:46,178 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-07 16:48:21] 2026-03-08 00:47:46,178 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-07 16:48:21] 2026-03-08 00:47:46,178 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-07 16:48:21] 2026-03-08 00:47:46,179 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-07 16:48:21] 2026-03-08 00:47:46,179 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-07 16:48:21] 2026-03-08 00:47:46,179 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-07 16:48:21] 2026-03-08 00:47:46,179 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-07 16:48:21] 2026-03-08 00:47:46,179 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-07 16:48:21] 2026-03-08 00:47:46,179 | INFO     | job 7039266634 has completed (purged errors)
[2026-03-07 16:48:21] 2026-03-08 00:47:46,179 | INFO     | overall cleanup function is called
[2026-03-07 16:48:21] 2026-03-08 00:47:46,328 | INFO     | PID=776789 has CPU usage=2.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-03-07 16:48:21] 2026-03-08 00:47:46,328 | INFO     | .. there are 35 such processes running
[2026-03-07 16:48:21] 2026-03-08 00:47:47,248 | INFO     | --- collectZombieJob: --- 10, [786211]
[2026-03-07 16:48:21] 2026-03-08 00:47:47,248 | INFO     | zombie collector waiting for pid 786211
[2026-03-07 16:48:21] 2026-03-08 00:47:47,249 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-07 16:48:21] 2026-03-08 00:47:47,249 | INFO     | collected zombie processes
[2026-03-07 16:48:21] 2026-03-08 00:47:47,249 | INFO     | will attempt to kill all subprocesses of pid=786211
[2026-03-07 16:48:21] 2026-03-08 00:47:48,003 | INFO     | process IDs to be killed: [786211] (in reverse order)
[2026-03-07 16:48:21] 2026-03-08 00:47:49,114 | WARNING  | found no corresponding commands to process id(s)
[2026-03-07 16:48:21] 2026-03-08 00:47:49,114 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-07 16:48:21] 2026-03-08 00:47:49,168 | INFO     | did not find any defunct processes belonging to 786211
[2026-03-07 16:48:21] 2026-03-08 00:47:49,224 | INFO     | did not find any defunct processes belonging to 786211
[2026-03-07 16:48:21] 2026-03-08 00:47:49,229 | INFO     | ready for new job
[2026-03-07 16:48:21] 2026-03-08 00:47:49,230 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-07 16:48:21] 2026-03-08 00:47:49,232 | INFO     | **************************************
[2026-03-07 16:48:21] 2026-03-08 00:47:49,232 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-03-07 16:48:21] 2026-03-08 00:47:49,232 | INFO     | **************************************
[2026-03-07 16:48:21] 2026-03-08 00:47:49,232 | INFO     | 
[2026-03-07 16:48:21] 2026-03-08 00:47:49,242 | INFO     | architecture information:
[2026-03-07 16:48:21] 2026-03-08 00:47:49,251 | INFO     | executing command: cat /etc/os-release
[2026-03-07 16:48:21] 2026-03-08 00:47:49,326 | INFO     | cat /etc/os-release:
[2026-03-07 16:48:21] NAME="CentOS Linux"
[2026-03-07 16:48:21] VERSION="7 (Core)"
[2026-03-07 16:48:21] ID="centos"
[2026-03-07 16:48:21] ID_LIKE="rhel fedora"
[2026-03-07 16:48:21] VERSION_ID="7"
[2026-03-07 16:48:21] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-07 16:48:21] ANSI_COLOR="0;31"
[2026-03-07 16:48:21] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-07 16:48:21] HOME_URL="https://www.centos.org/"
[2026-03-07 16:48:21] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-07 16:48:21] 
[2026-03-07 16:48:21] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-07 16:48:21] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-07 16:48:21] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-07 16:48:21] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-07 16:48:21] 
[2026-03-07 16:48:21] 2026-03-08 00:47:49,326 | INFO     | **************************************
[2026-03-07 16:48:21] 2026-03-08 00:47:49,836 | INFO     | executing command: df -mP /home/boinc/slots/0
[2026-03-07 16:48:21] 2026-03-08 00:47:49,915 | INFO     | sufficient remaining disk space (2113912438784 B)
[2026-03-07 16:48:21] 2026-03-08 00:47:49,915 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-07 16:48:21] 2026-03-08 00:47:49,916 | INFO     | current server update state: UPDATING_FINAL
[2026-03-07 16:48:21] 2026-03-08 00:47:49,916 | INFO     | update_server=False
[2026-03-07 16:48:21] 2026-03-08 00:47:49,916 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-07 16:48:21] 2026-03-08 00:47:49,917 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-07 16:48:21] 2026-03-08 00:47:50,080 | INFO     | all data control threads have been joined
[2026-03-07 16:48:21] 2026-03-08 00:47:50,357 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-03-07 16:48:21] 2026-03-08 00:47:50,357 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-03-07 16:48:21] 2026-03-08 00:47:50,358 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-07 16:48:21] 2026-03-08 00:47:50,358 | INFO     | will abort loop
[2026-03-07 16:48:21] 2026-03-08 00:47:50,922 | INFO     | [job] retrieve thread has finished
[2026-03-07 16:48:21] 2026-03-08 00:47:51,021 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-07 16:48:21] 2026-03-08 00:47:51,085 | INFO     | [data] control thread has finished
[2026-03-07 16:48:21] 2026-03-08 00:47:51,122 | INFO     | [job] validate thread has finished
[2026-03-07 16:48:21] 2026-03-08 00:47:51,226 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-07 16:48:21] 2026-03-08 00:47:51,265 | INFO     | all payload control threads have been joined
[2026-03-07 16:48:21] 2026-03-08 00:47:51,278 | INFO     | [data] copytool_in thread has finished
[2026-03-07 16:48:21] 2026-03-08 00:47:51,300 | INFO     | [payload] execute_payloads thread has finished
[2026-03-07 16:48:21] 2026-03-08 00:47:51,363 | INFO     | [job] job monitor thread has finished
[2026-03-07 16:48:21] 2026-03-08 00:47:51,504 | INFO     | all job control threads have been joined
[2026-03-07 16:48:21] 2026-03-08 00:47:51,598 | INFO     | [payload] validate_post thread has finished
[2026-03-07 16:48:21] 2026-03-08 00:47:51,639 | INFO     | [payload] validate_pre thread has finished
[2026-03-07 16:48:21] 2026-03-08 00:47:51,759 | INFO     | [job] create_data_payload thread has finished
[2026-03-07 16:48:21] 2026-03-08 00:47:51,924 | INFO     | [data] copytool_out thread has finished
[2026-03-07 16:48:21] 2026-03-08 00:47:51,974 | INFO     | [payload] failed_post thread has finished
[2026-03-07 16:48:21] 2026-03-08 00:47:52,030 | INFO     | [job] queue monitor thread has finished
[2026-03-07 16:48:21] 2026-03-08 00:47:52,271 | INFO     | [payload] control thread has finished
[2026-03-07 16:48:21] 2026-03-08 00:47:52,510 | INFO     | [job] control thread has finished
[2026-03-07 16:48:21] 2026-03-08 00:47:53,188 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-07 16:48:21] 2026-03-08 00:47:57,197 | INFO     | [data] queue_monitor thread has finished
[2026-03-07 16:48:21] 2026-03-08 00:47:59,929 | INFO     | [monitor] cgroup control has ended
[2026-03-07 16:48:21] 2026-03-08 00:48:00,985 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140547756185408)>', '<ExcThread(monitor, started 140546689459968)>']
[2026-03-07 16:48:21] 2026-03-08 00:48:06,011 | INFO     | all workflow threads have been joined
[2026-03-07 16:48:21] 2026-03-08 00:48:06,011 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-07 16:48:21] 2026-03-08 00:48:06,012 | INFO     | traces error code: 0
[2026-03-07 16:48:21] 2026-03-08 00:48:06,012 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-07 16:48:21] 2026-03-08 00:48:19,720 | INFO     | PID=776789 has CPU usage=3.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-03-07 16:48:21] 2026-03-08 00:48:19,721 | INFO     | .. there are 35 such processes running
[2026-03-07 16:48:21] 2026-03-08 00:48:19,726 | INFO     | found 0 job(s) in 20 queues
[2026-03-07 16:48:21] 2026-03-08 00:48:19,726 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-07 16:48:21] 2026-03-08 00:48:19,726 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-07 16:48:21] 2026-03-08 00:48:19,726 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-07 16:48:21] 2026-03-08 00:48:19,726 | CRITICAL | thread 'MainThread' is not alive
[2026-03-07 16:48:21] 2026-03-08 00:48:19,727 | INFO     | [monitor] control thread has ended
[2026-03-07 16:48:21] 2026-03-08 00:48:20,218 [wrapper] ==== pilot stdout END ====
[2026-03-07 16:48:21] 2026-03-08 00:48:20,231 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-07 16:48:21] 2026-03-08 00:48:20,262 [wrapper] pilotpid: 776789
[2026-03-07 16:48:21] 2026-03-08 00:48:20,272 [wrapper] Pilot exit status: 0
[2026-03-07 16:48:21] 2026-03-08 00:48:20,429 [wrapper] pandaids: 7039266634
[2026-03-07 16:48:21] 2026-03-08 00:48:20,701 [wrapper] cleanup supervisor_pilot  776795 776790
[2026-03-07 16:48:21] 2026-03-08 00:48:20,720 [wrapper] Test setup, not cleaning
[2026-03-07 16:48:21] 2026-03-08 00:48:20,735 [wrapper] apfmon messages muted
[2026-03-07 16:48:21] 2026-03-08 00:48:20,768 [wrapper] ==== wrapper stdout END ====
[2026-03-07 16:48:21] 2026-03-08 00:48:20,799 [wrapper] ==== wrapper stderr END ====
[2026-03-07 16:48:21]  *** Error codes and diagnostics ***
[2026-03-07 16:48:21]     "exeErrorCode": 65,
[2026-03-07 16:48:21]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (1)",
[2026-03-07 16:48:21]     "pilotErrorCode": 1305,
[2026-03-07 16:48:21]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (1)",
[2026-03-07 16:48:21]  *** Listing of results directory ***
[2026-03-07 16:48:21] total 432708
[2026-03-07 16:48:21] -rw-r--r--. 1 boinc boinc    584627 Mar  7 12:25 pilot3.tar.gz
[2026-03-07 16:48:21] -rwx------. 1 boinc boinc     36322 Mar  7 12:26 runpilot2-wrapper.sh
[2026-03-07 16:48:21] -rw-r--r--. 1 boinc boinc      5111 Mar  7 12:27 queuedata.json
[2026-03-07 16:48:21] -rw-r--r--. 1 boinc boinc       100 Mar  7 16:41 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-07 16:48:21] -rwxr-xr-x. 1 boinc boinc      7986 Mar  7 16:41 run_atlas
[2026-03-07 16:48:21] -rw-r--r--. 1 boinc boinc       105 Mar  7 16:41 job.xml
[2026-03-07 16:48:21] -rw-r--r--. 1 boinc boinc      6593 Mar  7 16:41 init_data.xml
[2026-03-07 16:48:21] -rw-r--r--. 2 boinc boinc 438930111 Mar  7 16:41 EVNT.46701403._000386.pool.root.1
[2026-03-07 16:48:21] -rw-r--r--. 2 boinc boinc     15845 Mar  7 16:41 start_atlas.sh
[2026-03-07 16:48:21] drwxrwx--x. 2 boinc boinc      4096 Mar  7 16:41 shared
[2026-03-07 16:48:21] -rw-r--r--. 2 boinc boinc    597956 Mar  7 16:41 input.tar.gz
[2026-03-07 16:48:21] -rw-r--r--. 1 boinc boinc         0 Mar  7 16:41 boinc_lockfile
[2026-03-07 16:48:21] -rw-r--r--. 1 boinc boinc      2564 Mar  7 16:42 pandaJob.out
[2026-03-07 16:48:21] -rw-------. 1 boinc boinc    999177 Mar  7 16:42 agis_schedconf.cvmfs.json
[2026-03-07 16:48:21] -rw-------. 1 boinc boinc   1521291 Mar  7 16:42 agis_ddmendpoints.agis.ALL.json
[2026-03-07 16:48:21] -rw-------. 1 boinc boinc       445 Mar  7 16:42 workernode_map.json
[2026-03-07 16:48:21] drwx------. 5 boinc boinc      4096 Mar  7 16:43 pilot3
[2026-03-07 16:48:21] -rw-r--r--. 1 boinc boinc       525 Mar  7 16:45 boinc_task_state.xml
[2026-03-07 16:48:21] -rw-------. 1 boinc boinc       998 Mar  7 16:45 memory_monitor_summary.json
[2026-03-07 16:48:21] -rw-------. 1 boinc boinc     22612 Mar  7 16:45 log.48955006._019304.job.log.tgz.1
[2026-03-07 16:48:21] -rw-------. 1 boinc boinc        95 Mar  7 16:47 pilot_heartbeat.json
[2026-03-07 16:48:21] -rw-------. 1 boinc boinc      7063 Mar  7 16:47 heartbeat.json
[2026-03-07 16:48:21] -rw-r--r--. 1 boinc boinc        23 Mar  7 16:48 wrapper_checkpoint.txt
[2026-03-07 16:48:21] -rw-------. 1 boinc boinc       892 Mar  7 16:48 pilotlog.txt
[2026-03-07 16:48:21] -rw-------. 1 boinc boinc     95224 Mar  7 16:48 log.48955006._019304.job.log.1
[2026-03-07 16:48:21] -rw-------. 1 boinc boinc       188 Mar  7 16:48 output.list
[2026-03-07 16:48:21] -rw-r--r--. 1 boinc boinc       620 Mar  7 16:48 runtime_log
[2026-03-07 16:48:21] -rw-------. 1 boinc boinc    133120 Mar  7 16:48 result.tar.gz
[2026-03-07 16:48:21] -rw-r--r--. 1 boinc boinc      8635 Mar  7 16:48 runtime_log.err
[2026-03-07 16:48:21] -rw-------. 1 boinc boinc       645 Mar  7 16:48 Ak5MDmPPDJ9n9Rq4apOajLDm4fhM0noT9bVooX4SDmThULDmFTJcrn.diag
[2026-03-07 16:48:21] -rw-r--r--. 1 boinc boinc      8192 Mar  7 16:48 boinc_mmap_file
[2026-03-07 16:48:21] -rw-r--r--. 1 boinc boinc     21941 Mar  7 16:48 stderr.txt
[2026-03-07 16:48:21] No HITS result produced
[2026-03-07 16:48:21]  *** Contents of shared directory: ***
[2026-03-07 16:48:21] total 429380
[2026-03-07 16:48:21] -rw-r--r--. 2 boinc boinc 438930111 Mar  7 16:41 ATLAS.root_0
[2026-03-07 16:48:21] -rw-r--r--. 2 boinc boinc     15845 Mar  7 16:41 start_atlas.sh
[2026-03-07 16:48:21] -rw-r--r--. 2 boinc boinc    597956 Mar  7 16:41 input.tar.gz
[2026-03-07 16:48:21] -rw-------. 1 boinc boinc    133120 Mar  7 16:48 result.tar.gz
16:48:23 (773037): run_atlas exited; CPU time 37.545298
16:48:23 (773037): called boinc_finish(0)

</stderr_txt>
]]>

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