Stderr output

<core_client_version>8.3.0</core_client_version>
<![CDATA[
<stderr_txt>
14:42:20 (1959678): wrapper (7.7.26015): starting
14:42:20 (1959678): wrapper: running run_atlas (--nthreads 4)
[2026-03-07 14:42:20] Arguments: --nthreads 4
[2026-03-07 14:42:20] Threads: 4
[2026-03-07 14:42:20] Checking for CVMFS
[2026-03-07 14:42:20] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-07 14:42:21] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-07 14:42:21] Running cvmfs_config stat atlas.cern.ch
[2026-03-07 14:42:22] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-07 14:42:22] 2.13.3.0 21737 7144 51288 157012 0 50 8668752 102400000 2748 130560 15 4977065 99.989 247260 65 http://s1bnl-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
[2026-03-07 14:42:22] CVMFS is ok
[2026-03-07 14:42:22] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-07 14:42:22] Small home clusters do not require a local http proxy but it is suggested if
[2026-03-07 14:42:22] more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
[2026-03-07 14:42:22] Further information can be found at the LHC@home message board.
[2026-03-07 14:42:22] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-07 14:42:22] Checking for apptainer binary...
[2026-03-07 14:42:22] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-07 14:42:22] Running /usr/bin/apptainer --version
[2026-03-07 14:42:22] apptainer version 1.4.5
[2026-03-07 14:42:22] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-07 14:42:22] T7810-Ubuntu
[2026-03-07 14:42:22] apptainer works
[2026-03-07 14:42:22] Set ATHENA_PROC_NUMBER=4
[2026-03-07 14:42:22] Set ATHENA_CORE_NUMBER=4
[2026-03-07 14:42:22] Starting ATLAS job with PandaID=7039149513
[2026-03-07 14:42:22] Running command: /usr/bin/apptainer exec -B /cvmfs,/home/whitlerd/Desktop/BOINC/slots/6 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-07 17:38:05]  *** The last 200 lines of the pilot log: ***
[2026-03-07 17:38:05] 2026-03-07 22:37:04,212 | INFO     | job 7039149513 has state=finished
[2026-03-07 17:38:05] 2026-03-07 22:37:04,212 | INFO     | preparing for final server update for job 7039149513 in state='finished'
[2026-03-07 17:38:05] 2026-03-07 22:37:04,548 | INFO     | sent prmon JSON dictionary to logstash server (urllib method)
[2026-03-07 17:38:05] 2026-03-07 22:37:04,548 | INFO     | reading metadata from: /home/whitlerd/Desktop/BOINC/slots/6/PanDA_Pilot-7039149513/jobReport.json
[2026-03-07 17:38:05] 2026-03-07 22:37:04,551 | INFO     | added worker_node to metadata from /home/whitlerd/Desktop/BOINC/slots/6/workernode_map.json
[2026-03-07 17:38:05] 2026-03-07 22:37:04,551 | INFO     | this job has now completed (state=finished)
[2026-03-07 17:38:05] 2026-03-07 22:37:04,551 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-03-07 17:38:05] 2026-03-07 22:37:04,552 | INFO     | log transfer has been attempted: DONE
[2026-03-07 17:38:05] 2026-03-07 22:37:04,552 | INFO     | job 7039149513 has finished - writing final server update
[2026-03-07 17:38:05] 2026-03-07 22:37:04,552 | INFO     | total number of processed events: 400 (read)
[2026-03-07 17:38:05] 2026-03-07 22:37:04,568 | INFO     | using path: /home/whitlerd/Desktop/BOINC/slots/6/PanDA_Pilot-7039149513/memory_monitor_summary.json (trf name=prmon)
[2026-03-07 17:38:05] 2026-03-07 22:37:04,569 | INFO     | extracted standard info from prmon json
[2026-03-07 17:38:05] 2026-03-07 22:37:04,569 | INFO     | extracted standard memory fields from prmon json
[2026-03-07 17:38:05] 2026-03-07 22:37:04,569 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-03-07 17:38:05] 2026-03-07 22:37:04,569 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-03-07 17:38:05] 2026-03-07 22:37:04,569 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-03-07 17:38:05] 2026-03-07 22:37:04,573 | INFO     | fitting pss+swap vs Time
[2026-03-07 17:38:05] 2026-03-07 22:37:04,574 | INFO     | sum of square deviations: 1550429070.0
[2026-03-07 17:38:05] 2026-03-07 22:37:04,575 | INFO     | sum of deviations: -46372990621.00001
[2026-03-07 17:38:05] 2026-03-07 22:37:04,575 | INFO     | mean x: 1772917769.0
[2026-03-07 17:38:05] 2026-03-07 22:37:04,575 | INFO     | mean y: 2409705.9064327483
[2026-03-07 17:38:05] 2026-03-07 22:37:04,575 | INFO     | intersect: 53029988112.72853
[2026-03-07 17:38:05] 2026-03-07 22:37:04,576 | INFO     | chi2: 1.7543183379837592
[2026-03-07 17:38:05] 2026-03-07 22:37:04,576 | INFO     | sum of square deviations: 1418361477.5
[2026-03-07 17:38:05] 2026-03-07 22:37:04,577 | INFO     | sum of deviations: -44080636637.50001
[2026-03-07 17:38:05] 2026-03-07 22:37:04,577 | INFO     | mean x: 1772917616.5
[2026-03-07 17:38:05] 2026-03-07 22:37:04,577 | INFO     | mean y: 2412353.6686746986
[2026-03-07 17:38:05] 2026-03-07 22:37:04,577 | INFO     | intersect: 55102144319.67527
[2026-03-07 17:38:05] 2026-03-07 22:37:04,578 | INFO     | chi2: 1.7457422555493567
[2026-03-07 17:38:05] 2026-03-07 22:37:04,578 | INFO     | current chi2=1.7457422555493567 (change=0.48885554284629207 %)
[2026-03-07 17:38:05] 2026-03-07 22:37:04,578 | INFO     | right removable region: 165
[2026-03-07 17:38:05] 2026-03-07 22:37:04,578 | INFO     | sum of square deviations: 1418361477.5
[2026-03-07 17:38:05] 2026-03-07 22:37:04,579 | INFO     | sum of deviations: -66604486508.0
[2026-03-07 17:38:05] 2026-03-07 22:37:04,580 | INFO     | mean x: 1772917921.5
[2026-03-07 17:38:05] 2026-03-07 22:37:04,580 | INFO     | mean y: 2432639.7831325303
[2026-03-07 17:38:05] 2026-03-07 22:37:04,580 | INFO     | intersect: 83256447681.47278
[2026-03-07 17:38:05] 2026-03-07 22:37:04,580 | INFO     | chi2: 0.36960995625897836
[2026-03-07 17:38:05] 2026-03-07 22:37:04,580 | INFO     | current chi2=0.36960995625897836 (change=78.93142035534032 %)
[2026-03-07 17:38:05] 2026-03-07 22:37:04,581 | INFO     | sum of square deviations: 1294014960.0
[2026-03-07 17:38:05] 2026-03-07 22:37:04,582 | INFO     | sum of deviations: -60313111574.00003
[2026-03-07 17:38:05] 2026-03-07 22:37:04,582 | INFO     | mean x: 1772918074.0
[2026-03-07 17:38:05] 2026-03-07 22:37:04,582 | INFO     | mean y: 2424916.1739130435
[2026-03-07 17:38:05] 2026-03-07 22:37:04,582 | INFO     | intersect: 82636868036.30852
[2026-03-07 17:38:05] 2026-03-07 22:37:04,582 | INFO     | chi2: 0.36902893262470887
[2026-03-07 17:38:05] 2026-03-07 22:37:04,583 | INFO     | current chi2=0.36902893262470887 (change=0.15719912963123006 %)
[2026-03-07 17:38:05] 2026-03-07 22:37:04,583 | INFO     | left removable region: 20
[2026-03-07 17:38:05] 2026-03-07 22:37:04,583 | INFO     | sum of square deviations: 945282840.0
[2026-03-07 17:38:05] 2026-03-07 22:37:04,584 | INFO     | sum of deviations: -43980372310.00001
[2026-03-07 17:38:05] 2026-03-07 22:37:04,584 | INFO     | mean x: 1772918196.0
[2026-03-07 17:38:05] 2026-03-07 22:37:04,584 | INFO     | mean y: 2409501.027586207
[2026-03-07 17:38:05] 2026-03-07 22:37:04,584 | INFO     | intersect: 82489469495.95308
[2026-03-07 17:38:05] 2026-03-07 22:37:04,585 | INFO     | chi2: 0.34515458618433287
[2026-03-07 17:38:05] 2026-03-07 22:37:04,585 | INFO     | current memory leak: -46.53 B/s (using 145 data points, chi2=0.35)
[2026-03-07 17:38:05] 2026-03-07 22:37:04,585 | INFO     | could have reported an average CPU frequency of 2711 MHz (9 samples)
[2026-03-07 17:38:05] 2026-03-07 22:37:04,586 | INFO     | ..............................
[2026-03-07 17:38:05] 2026-03-07 22:37:04,586 | INFO     | . Timing measurements:
[2026-03-07 17:38:05] 2026-03-07 22:37:04,586 | INFO     | . get job = 0 s
[2026-03-07 17:38:05] 2026-03-07 22:37:04,586 | INFO     | . initial setup = 7 s
[2026-03-07 17:38:05] 2026-03-07 22:37:04,586 | INFO     | . payload setup = 6 s
[2026-03-07 17:38:05] 2026-03-07 22:37:04,586 | INFO     | . stage-in = 0 s
[2026-03-07 17:38:05] 2026-03-07 22:37:04,586 | INFO     | . payload execution = 10434 s
[2026-03-07 17:38:05] 2026-03-07 22:37:04,586 | INFO     | . stage-out = 1 s
[2026-03-07 17:38:05] 2026-03-07 22:37:04,587 | INFO     | . log creation = 0 s
[2026-03-07 17:38:05] 2026-03-07 22:37:04,587 | INFO     | ..............................
[2026-03-07 17:38:05] 2026-03-07 22:37:04,692 | INFO     | 
[2026-03-07 17:38:05] 2026-03-07 22:37:04,692 | INFO     | job summary report
[2026-03-07 17:38:05] 2026-03-07 22:37:04,693 | INFO     | --------------------------------------------------
[2026-03-07 17:38:05] 2026-03-07 22:37:04,693 | INFO     | PanDA job id: 7039149513
[2026-03-07 17:38:05] 2026-03-07 22:37:04,693 | INFO     | task id: 48955006
[2026-03-07 17:38:05] 2026-03-07 22:37:04,693 | INFO     | errors: (none)
[2026-03-07 17:38:05] 2026-03-07 22:37:04,693 | INFO     | status: LOG_TRANSFER = DONE 
[2026-03-07 17:38:05] 2026-03-07 22:37:04,693 | INFO     | pilot state: finished 
[2026-03-07 17:38:05] 2026-03-07 22:37:04,693 | INFO     | transexitcode: 0
[2026-03-07 17:38:05] 2026-03-07 22:37:04,693 | INFO     | exeerrorcode: 0
[2026-03-07 17:38:05] 2026-03-07 22:37:04,693 | INFO     | exeerrordiag: 
[2026-03-07 17:38:05] 2026-03-07 22:37:04,694 | INFO     | exitcode: 0
[2026-03-07 17:38:05] 2026-03-07 22:37:04,694 | INFO     | exitmsg: OK
[2026-03-07 17:38:05] 2026-03-07 22:37:04,694 | INFO     | cpuconsumptiontime: 40634 s
[2026-03-07 17:38:05] 2026-03-07 22:37:04,694 | INFO     | nevents: 400
[2026-03-07 17:38:05] 2026-03-07 22:37:04,694 | INFO     | neventsw: 0
[2026-03-07 17:38:05] 2026-03-07 22:37:04,694 | INFO     | pid: 1968805
[2026-03-07 17:38:05] 2026-03-07 22:37:04,694 | INFO     | pgrp: 1968805
[2026-03-07 17:38:05] 2026-03-07 22:37:04,694 | INFO     | corecount: 4
[2026-03-07 17:38:05] 2026-03-07 22:37:04,694 | INFO     | event service: False
[2026-03-07 17:38:05] 2026-03-07 22:37:04,694 | INFO     | sizes: {0: 2294715, 1: 2295847, 12: 2295847, 10444: 2324621, 10445: 2333647, 10448: 2333703, 10451: 2334089}
[2026-03-07 17:38:05] 2026-03-07 22:37:04,694 | INFO     | --------------------------------------------------
[2026-03-07 17:38:05] 2026-03-07 22:37:04,695 | INFO     | 
[2026-03-07 17:38:05] 2026-03-07 22:37:04,695 | INFO     | executing command: ls -lF /home/whitlerd/Desktop/BOINC/slots/6
[2026-03-07 17:38:05] 2026-03-07 22:37:04,722 | INFO     | queue jobs had 0 job(s) [purged]
[2026-03-07 17:38:05] 2026-03-07 22:37:04,722 | INFO     | queue payloads had 0 job(s) [purged]
[2026-03-07 17:38:05] 2026-03-07 22:37:04,722 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-07 17:38:05] 2026-03-07 22:37:04,723 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-07 17:38:05] 2026-03-07 22:37:04,723 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-07 17:38:05] 2026-03-07 22:37:04,723 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-07 17:38:05] 2026-03-07 22:37:04,723 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-07 17:38:05] 2026-03-07 22:37:04,723 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-07 17:38:05] 2026-03-07 22:37:04,723 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-07 17:38:05] 2026-03-07 22:37:04,723 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-07 17:38:05] 2026-03-07 22:37:04,723 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-07 17:38:05] 2026-03-07 22:37:04,723 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-07 17:38:05] 2026-03-07 22:37:04,723 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-07 17:38:05] 2026-03-07 22:37:04,723 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-07 17:38:05] 2026-03-07 22:37:04,723 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-07 17:38:05] 2026-03-07 22:37:04,723 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-07 17:38:05] 2026-03-07 22:37:04,723 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-07 17:38:05] 2026-03-07 22:37:04,723 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-07 17:38:05] 2026-03-07 22:37:04,723 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-07 17:38:05] 2026-03-07 22:37:04,724 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-07 17:38:05] 2026-03-07 22:37:04,724 | INFO     | job 7039149513 has completed (purged errors)
[2026-03-07 17:38:05] 2026-03-07 22:37:04,724 | INFO     | overall cleanup function is called
[2026-03-07 17:38:05] 2026-03-07 22:37:05,732 | INFO     | --- collectZombieJob: --- 10, [1968805]
[2026-03-07 17:38:05] 2026-03-07 22:37:05,732 | INFO     | zombie collector waiting for pid 1968805
[2026-03-07 17:38:05] 2026-03-07 22:37:05,732 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-07 17:38:05] 2026-03-07 22:37:05,733 | INFO     | collected zombie processes
[2026-03-07 17:38:05] 2026-03-07 22:37:05,733 | INFO     | will attempt to kill all subprocesses of pid=1968805
[2026-03-07 17:38:05] 2026-03-07 22:37:06,084 | INFO     | process IDs to be killed: [1968805] (in reverse order)
[2026-03-07 17:38:05] 2026-03-07 22:37:06,168 | WARNING  | found no corresponding commands to process id(s)
[2026-03-07 17:38:05] 2026-03-07 22:37:06,169 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-07 17:38:05] 2026-03-07 22:37:06,178 | INFO     | did not find any defunct processes belonging to 1968805
[2026-03-07 17:38:05] 2026-03-07 22:37:06,185 | INFO     | did not find any defunct processes belonging to 1968805
[2026-03-07 17:38:05] 2026-03-07 22:37:06,186 | INFO     | ready for new job
[2026-03-07 17:38:05] 2026-03-07 22:37:06,186 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-07 17:38:05] 2026-03-07 22:37:06,188 | INFO     | **************************************
[2026-03-07 17:38:05] 2026-03-07 22:37:06,188 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-03-07 17:38:05] 2026-03-07 22:37:06,188 | INFO     | **************************************
[2026-03-07 17:38:05] 2026-03-07 22:37:06,188 | INFO     | 
[2026-03-07 17:38:05] 2026-03-07 22:37:06,193 | INFO     | architecture information:
[2026-03-07 17:38:05] 2026-03-07 22:37:06,193 | INFO     | executing command: cat /etc/os-release
[2026-03-07 17:38:05] 2026-03-07 22:37:06,210 | INFO     | cat /etc/os-release:
[2026-03-07 17:38:05] NAME="CentOS Linux"
[2026-03-07 17:38:05] VERSION="7 (Core)"
[2026-03-07 17:38:05] ID="centos"
[2026-03-07 17:38:05] ID_LIKE="rhel fedora"
[2026-03-07 17:38:05] VERSION_ID="7"
[2026-03-07 17:38:05] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-07 17:38:05] ANSI_COLOR="0;31"
[2026-03-07 17:38:05] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-07 17:38:05] HOME_URL="https://www.centos.org/"
[2026-03-07 17:38:05] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-07 17:38:05] 
[2026-03-07 17:38:05] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-07 17:38:05] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-07 17:38:05] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-07 17:38:05] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-07 17:38:05] 
[2026-03-07 17:38:05] 2026-03-07 22:37:06,210 | INFO     | **************************************
[2026-03-07 17:38:05] 2026-03-07 22:37:06,713 | INFO     | executing command: df -mP /home/whitlerd/Desktop/BOINC/slots/6
[2026-03-07 17:38:05] 2026-03-07 22:37:06,732 | INFO     | sufficient remaining disk space (399237971968 B)
[2026-03-07 17:38:05] 2026-03-07 22:37:06,732 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-07 17:38:05] 2026-03-07 22:37:06,732 | INFO     | current server update state: UPDATING_FINAL
[2026-03-07 17:38:05] 2026-03-07 22:37:06,733 | INFO     | update_server=False
[2026-03-07 17:38:05] 2026-03-07 22:37:06,733 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-07 17:38:05] 2026-03-07 22:37:06,751 | INFO     | all payload control threads have been joined
[2026-03-07 17:38:05] 2026-03-07 22:37:06,887 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-07 17:38:05] 2026-03-07 22:37:06,887 | INFO     | aborting loop
[2026-03-07 17:38:05] 2026-03-07 22:37:07,366 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-07 17:38:05] 2026-03-07 22:37:07,566 | INFO     | all data control threads have been joined
[2026-03-07 17:38:05] 2026-03-07 22:37:07,620 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-07 17:38:05] 2026-03-07 22:37:07,725 | INFO     | all job control threads have been joined
[2026-03-07 17:38:05] 2026-03-07 22:37:07,738 | INFO     | [job] retrieve thread has finished
[2026-03-07 17:38:05] 2026-03-07 22:37:07,756 | INFO     | [payload] control thread has finished
[2026-03-07 17:38:05] 2026-03-07 22:37:07,827 | INFO     | [payload] failed_post thread has finished
[2026-03-07 17:38:05] 2026-03-07 22:37:07,892 | INFO     | [job] job monitor thread has finished
[2026-03-07 17:38:05] 2026-03-07 22:37:07,903 | INFO     | [payload] execute_payloads thread has finished
[2026-03-07 17:38:05] 2026-03-07 22:37:07,948 | INFO     | [data] copytool_in thread has finished
[2026-03-07 17:38:05] 2026-03-07 22:37:08,572 | INFO     | [data] control thread has finished
[2026-03-07 17:38:05] 2026-03-07 22:37:08,604 | INFO     | [payload] validate_post thread has finished
[2026-03-07 17:38:05] 2026-03-07 22:37:08,724 | INFO     | [job] validate thread has finished
[2026-03-07 17:38:05] 2026-03-07 22:37:08,731 | INFO     | [job] control thread has finished
[2026-03-07 17:38:05] 2026-03-07 22:37:09,010 | INFO     | [job] create_data_payload thread has finished
[2026-03-07 17:38:05] 2026-03-07 22:37:09,099 | INFO     | [payload] validate_pre thread has finished
[2026-03-07 17:38:05] 2026-03-07 22:37:09,371 | INFO     | [data] copytool_out thread has finished
[2026-03-07 17:38:05] 2026-03-07 22:37:09,704 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-07 17:38:05] 2026-03-07 22:37:10,707 | INFO     | [job] queue monitor thread has finished
[2026-03-07 17:38:05] 2026-03-07 22:37:11,628 | INFO     | [data] queue_monitor thread has finished
[2026-03-07 17:38:05] 2026-03-07 22:37:17,604 | INFO     | job.realtimelogging is not enabled
[2026-03-07 17:38:05] 2026-03-07 22:37:18,609 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-07 17:38:05] 2026-03-07 22:37:37,454 | INFO     | PID=1964042 has CPU usage=5.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-03-07 17:38:05] 2026-03-07 22:37:37,455 | INFO     | .. there are 4 such processes running
[2026-03-07 17:38:05] 2026-03-07 22:37:37,455 | INFO     | found 0 job(s) in 20 queues
[2026-03-07 17:38:05] 2026-03-07 22:37:37,456 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-07 17:38:05] 2026-03-07 22:37:37,456 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-07 17:38:05] 2026-03-07 22:37:58,774 | INFO     | [monitor] cgroup control has ended
[2026-03-07 17:38:05] 2026-03-07 22:38:00,684 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 138796902020928)>', '<ExcThread(monitor, started 138796263782144)>']
[2026-03-07 17:38:05] 2026-03-07 22:38:01,579 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-07 17:38:05] 2026-03-07 22:38:01,579 | INFO     | [monitor] control thread has ended
[2026-03-07 17:38:05] 2026-03-07 22:38:05,709 | INFO     | all workflow threads have been joined
[2026-03-07 17:38:05] 2026-03-07 22:38:05,709 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-07 17:38:05] 2026-03-07 22:38:05,709 | INFO     | traces error code: 0
[2026-03-07 17:38:05] 2026-03-07 22:38:05,710 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-07 17:38:05] 2026-03-07 22:38:05,825 [wrapper] ==== pilot stdout END ====
[2026-03-07 17:38:05] 2026-03-07 22:38:05,827 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-07 17:38:05] 2026-03-07 22:38:05,831 [wrapper] pilotpid: 1964042
[2026-03-07 17:38:05] 2026-03-07 22:38:05,835 [wrapper] Pilot exit status: 0
[2026-03-07 17:38:05] 2026-03-07 22:38:05,850 [wrapper] pandaids: 7039149513
[2026-03-07 17:38:05] 2026-03-07 22:38:05,900 [wrapper] cleanup supervisor_pilot 2021095 1964043
[2026-03-07 17:38:05] 2026-03-07 22:38:05,902 [wrapper] Test setup, not cleaning
[2026-03-07 17:38:05] 2026-03-07 22:38:05,905 [wrapper] apfmon messages muted
[2026-03-07 17:38:05] 2026-03-07 22:38:05,908 [wrapper] ==== wrapper stdout END ====
[2026-03-07 17:38:05] 2026-03-07 22:38:05,912 [wrapper] ==== wrapper stderr END ====
[2026-03-07 17:38:05]  *** Error codes and diagnostics ***
[2026-03-07 17:38:05]     "exeErrorCode": 0,
[2026-03-07 17:38:05]     "exeErrorDiag": "",
[2026-03-07 17:38:05]     "pilotErrorCode": 0,
[2026-03-07 17:38:05]     "pilotErrorDiag": "",
[2026-03-07 17:38:05]  *** Listing of results directory ***
[2026-03-07 17:38:05] total 613584
[2026-03-07 17:38:05] -rw-r--r-- 1 whitlerd whitlerd    584627 Mar  7 10:36 pilot3.tar.gz
[2026-03-07 17:38:05] -rwx------ 1 whitlerd whitlerd     36322 Mar  7 10:36 runpilot2-wrapper.sh
[2026-03-07 17:38:05] -rw-r--r-- 1 whitlerd whitlerd      5111 Mar  7 10:37 queuedata.json
[2026-03-07 17:38:05] -rw-rw-r-- 1 whitlerd whitlerd       100 Mar  7 14:42 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-07 17:38:05] -rwxr-xr-x 1 whitlerd whitlerd      7986 Mar  7 14:42 run_atlas
[2026-03-07 17:38:05] -rw-rw-r-- 1 whitlerd whitlerd       105 Mar  7 14:42 job.xml
[2026-03-07 17:38:05] -rw-r--r-- 2 whitlerd whitlerd 439371146 Mar  7 14:42 EVNT.46701403._000341.pool.root.1
[2026-03-07 17:38:05] -rw-r--r-- 2 whitlerd whitlerd     15845 Mar  7 14:42 start_atlas.sh
[2026-03-07 17:38:05] drwxrwx--x 2 whitlerd whitlerd      4096 Mar  7 14:42 shared
[2026-03-07 17:38:05] -rw-r--r-- 2 whitlerd whitlerd    597956 Mar  7 14:42 input.tar.gz
[2026-03-07 17:38:05] -rw-rw-r-- 1 whitlerd whitlerd      9126 Mar  7 14:42 init_data.xml
[2026-03-07 17:38:05] -rw-rw-r-- 1 whitlerd whitlerd         0 Mar  7 14:42 boinc_setup_complete
[2026-03-07 17:38:05] -rw-rw-r-- 1 whitlerd whitlerd         0 Mar  7 14:42 boinc_lockfile
[2026-03-07 17:38:05] -rw-rw-r-- 1 whitlerd whitlerd      2564 Mar  7 14:42 pandaJob.out
[2026-03-07 17:38:05] -rw------- 1 whitlerd whitlerd    999177 Mar  7 14:42 agis_schedconf.cvmfs.json
[2026-03-07 17:38:05] -rw------- 1 whitlerd whitlerd   1521291 Mar  7 14:42 agis_ddmendpoints.agis.ALL.json
[2026-03-07 17:38:05] -rw------- 1 whitlerd whitlerd       434 Mar  7 14:42 workernode_map.json
[2026-03-07 17:38:05] drwx------ 5 whitlerd whitlerd      4096 Mar  7 14:42 pilot3
[2026-03-07 17:38:05] -rw------- 1 whitlerd whitlerd 181247542 Mar  7 17:36 HITS.48955006._017038.pool.root.1
[2026-03-07 17:38:05] -rw-rw-r-- 1 whitlerd whitlerd       531 Mar  7 17:36 boinc_task_state.xml
[2026-03-07 17:38:05] -rw------- 1 whitlerd whitlerd      1032 Mar  7 17:36 memory_monitor_summary.json
[2026-03-07 17:38:05] -rw------- 1 whitlerd whitlerd    376002 Mar  7 17:36 log.48955006._017038.job.log.tgz.1
[2026-03-07 17:38:05] -rw------- 1 whitlerd whitlerd      6358 Mar  7 17:37 heartbeat.json
[2026-03-07 17:38:05] -rw------- 1 whitlerd whitlerd        95 Mar  7 17:37 pilot_heartbeat.json
[2026-03-07 17:38:05] -rw-rw-r-- 1 whitlerd whitlerd      8192 Mar  7 17:38 boinc_mmap_file
[2026-03-07 17:38:05] -rw-rw-r-- 1 whitlerd whitlerd        28 Mar  7 17:38 wrapper_checkpoint.txt
[2026-03-07 17:38:05] -rw------- 1 whitlerd whitlerd      4906 Mar  7 17:38 pilotlog.txt
[2026-03-07 17:38:05] -rw------- 1 whitlerd whitlerd   1495760 Mar  7 17:38 log.48955006._017038.job.log.1
[2026-03-07 17:38:05] -rw------- 1 whitlerd whitlerd       357 Mar  7 17:38 output.list
[2026-03-07 17:38:05] -rw-rw-r-- 1 whitlerd whitlerd       620 Mar  7 17:38 runtime_log
[2026-03-07 17:38:05] -rw------- 1 whitlerd whitlerd   1894400 Mar  7 17:38 result.tar.gz
[2026-03-07 17:38:05] -rw-rw-r-- 1 whitlerd whitlerd      9020 Mar  7 17:38 runtime_log.err
[2026-03-07 17:38:05] -rw------- 1 whitlerd whitlerd       650 Mar  7 17:38 HktMDmus8I9nsSi4ap6QjLDmwznN0nGgGQJmIVkRDmGHWLDmvqGZmn.diag
[2026-03-07 17:38:05] -rw-rw-r-- 1 whitlerd whitlerd     21380 Mar  7 17:38 stderr.txt
[2026-03-07 17:38:05] HITS file was successfully produced:
[2026-03-07 17:38:05] -rw------- 1 whitlerd whitlerd 181247542 Mar  7 17:36 shared/HITS.pool.root.1
[2026-03-07 17:38:05]  *** Contents of shared directory: ***
[2026-03-07 17:38:05] total 608536
[2026-03-07 17:38:05] -rw-r--r-- 2 whitlerd whitlerd 439371146 Mar  7 14:42 ATLAS.root_0
[2026-03-07 17:38:05] -rw-r--r-- 2 whitlerd whitlerd     15845 Mar  7 14:42 start_atlas.sh
[2026-03-07 17:38:05] -rw-r--r-- 2 whitlerd whitlerd    597956 Mar  7 14:42 input.tar.gz
[2026-03-07 17:38:05] -rw------- 1 whitlerd whitlerd 181247542 Mar  7 17:36 HITS.pool.root.1
[2026-03-07 17:38:05] -rw------- 1 whitlerd whitlerd   1894400 Mar  7 17:38 result.tar.gz
17:38:07 (1959678): run_atlas exited; CPU time 41051.548247
17:38:07 (1959678): called boinc_finish(0)

</stderr_txt>
]]>

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