Stderr output

<core_client_version>8.3.0</core_client_version>
<![CDATA[
<stderr_txt>
17:54:03 (2849136): wrapper (7.7.26015): starting
17:54:03 (2849136): wrapper: running run_atlas (--nthreads 4)
[2026-03-07 17:54:03] Arguments: --nthreads 4
[2026-03-07 17:54:03] Threads: 4
[2026-03-07 17:54:03] Checking for CVMFS
[2026-03-07 17:54:03] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-07 17:54:03] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-07 17:54:03] Running cvmfs_config stat atlas.cern.ch
[2026-03-07 17:54:04] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-07 17:54:04] 2.13.3.0 9162 7721 51444 157016 3 188 3920337 4096000 2705 130560 2 6675949 99.991 268592 81 http://s1bnl-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
[2026-03-07 17:54:04] CVMFS is ok
[2026-03-07 17:54:04] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-07 17:54:04] Small home clusters do not require a local http proxy but it is suggested if
[2026-03-07 17:54:04] more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
[2026-03-07 17:54:04] Further information can be found at the LHC@home message board.
[2026-03-07 17:54:04] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-07 17:54:04] Checking for apptainer binary...
[2026-03-07 17:54:04] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-07 17:54:04] Running /usr/bin/apptainer --version
[2026-03-07 17:54:04] apptainer version 1.4.5
[2026-03-07 17:54:04] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-07 17:54:04] SETI64-Ubuntu
[2026-03-07 17:54:04] apptainer works
[2026-03-07 17:54:04] Set ATHENA_PROC_NUMBER=4
[2026-03-07 17:54:04] Set ATHENA_CORE_NUMBER=4
[2026-03-07 17:54:04] Starting ATLAS job with PandaID=7045392605
[2026-03-07 17:54:04] Running command: /usr/bin/apptainer exec -B /cvmfs,/home/whitlerd/Desktop/BOINC/slots/82 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-07 20:21:03]  *** The last 200 lines of the pilot log: ***
[2026-03-07 20:21:03] 2026-03-08 01:20:30,357 | INFO     | mean x: 1772928295.0
[2026-03-07 20:21:03] 2026-03-08 01:20:30,357 | INFO     | mean y: 2309976.1007194244
[2026-03-07 20:21:03] 2026-03-08 01:20:30,357 | INFO     | intersect: -32174128195.529396
[2026-03-07 20:21:03] 2026-03-08 01:20:30,357 | INFO     | chi2: 1.4098458088366757
[2026-03-07 20:21:03] 2026-03-08 01:20:30,357 | INFO     | current chi2=1.4098458088366757 (change=31.904928954722067 %)
[2026-03-07 20:21:03] 2026-03-08 01:20:30,357 | INFO     | sum of square deviations: 746051197.5
[2026-03-07 20:21:03] 2026-03-08 01:20:30,358 | INFO     | sum of deviations: 14611931673.499994
[2026-03-07 20:21:03] 2026-03-08 01:20:30,358 | INFO     | mean x: 1772928142.5
[2026-03-07 20:21:03] 2026-03-08 01:20:30,358 | INFO     | mean y: 2309095.037313433
[2026-03-07 20:21:03] 2026-03-08 01:20:30,358 | INFO     | intersect: -34721721865.63313
[2026-03-07 20:21:03] 2026-03-08 01:20:30,359 | INFO     | chi2: 1.4115680746655468
[2026-03-07 20:21:03] 2026-03-08 01:20:30,359 | INFO     | current chi2=1.4115680746655468 (change=-0.12215987153178506 %)
[2026-03-07 20:21:03] 2026-03-08 01:20:30,359 | INFO     | right removable region: 133
[2026-03-07 20:21:03] 2026-03-08 01:20:30,359 | INFO     | sum of square deviations: 832722590.0
[2026-03-07 20:21:03] 2026-03-08 01:20:30,360 | INFO     | sum of deviations: -12065646219.0
[2026-03-07 20:21:03] 2026-03-08 01:20:30,360 | INFO     | mean x: 1772928600.0
[2026-03-07 20:21:03] 2026-03-08 01:20:30,360 | INFO     | mean y: 2328660.014388489
[2026-03-07 20:21:03] 2026-03-08 01:20:30,360 | INFO     | intersect: 25690990785.95355
[2026-03-07 20:21:03] 2026-03-08 01:20:30,360 | INFO     | chi2: 0.6922310674867181
[2026-03-07 20:21:03] 2026-03-08 01:20:30,361 | INFO     | current chi2=0.6922310674867181 (change=66.56547586636312 %)
[2026-03-07 20:21:03] 2026-03-08 01:20:30,361 | INFO     | sum of square deviations: 746051197.5
[2026-03-07 20:21:03] 2026-03-08 01:20:30,362 | INFO     | sum of deviations: -11081943200.0
[2026-03-07 20:21:03] 2026-03-08 01:20:30,362 | INFO     | mean x: 1772928752.5
[2026-03-07 20:21:03] 2026-03-08 01:20:30,362 | INFO     | mean y: 2326918.686567164
[2026-03-07 20:21:03] 2026-03-08 01:20:30,362 | INFO     | intersect: 26337645189.993084
[2026-03-07 20:21:03] 2026-03-08 01:20:30,362 | INFO     | chi2: 0.6924314540884717
[2026-03-07 20:21:03] 2026-03-08 01:20:30,362 | INFO     | current chi2=0.6924314540884717 (change=-0.02894793533048602 %)
[2026-03-07 20:21:03] 2026-03-08 01:20:30,362 | INFO     | left removable region: 20
[2026-03-07 20:21:03] 2026-03-08 01:20:30,363 | INFO     | sum of square deviations: 447383272.0
[2026-03-07 20:21:03] 2026-03-08 01:20:30,363 | INFO     | sum of deviations: -786276641.0
[2026-03-07 20:21:03] 2026-03-08 01:20:30,363 | INFO     | mean x: 1772928722.0
[2026-03-07 20:21:03] 2026-03-08 01:20:30,363 | INFO     | mean y: 2336681.5221238937
[2026-03-07 20:21:03] 2026-03-08 01:20:30,363 | INFO     | intersect: 3118261052.2182703
[2026-03-07 20:21:03] 2026-03-08 01:20:30,364 | INFO     | chi2: 0.003655271494251751
[2026-03-07 20:21:03] 2026-03-08 01:20:30,364 | INFO     | current memory leak: -1.76 B/s (using 113 data points, chi2=0.00)
[2026-03-07 20:21:03] 2026-03-08 01:20:30,364 | INFO     | could have reported an average CPU frequency of 2503 MHz (8 samples)
[2026-03-07 20:21:03] 2026-03-08 01:20:30,365 | INFO     | ..............................
[2026-03-07 20:21:03] 2026-03-08 01:20:30,365 | INFO     | . Timing measurements:
[2026-03-07 20:21:03] 2026-03-08 01:20:30,365 | INFO     | . get job = 0 s
[2026-03-07 20:21:03] 2026-03-08 01:20:30,365 | INFO     | . initial setup = 8 s
[2026-03-07 20:21:03] 2026-03-08 01:20:30,365 | INFO     | . payload setup = 6 s
[2026-03-07 20:21:03] 2026-03-08 01:20:30,365 | INFO     | . stage-in = 0 s
[2026-03-07 20:21:03] 2026-03-08 01:20:30,365 | INFO     | . payload execution = 8740 s
[2026-03-07 20:21:03] 2026-03-08 01:20:30,365 | INFO     | . stage-out = 0 s
[2026-03-07 20:21:03] 2026-03-08 01:20:30,365 | INFO     | . log creation = 0 s
[2026-03-07 20:21:03] 2026-03-08 01:20:30,365 | INFO     | ..............................
[2026-03-07 20:21:03] 2026-03-08 01:20:30,522 | WARNING  | process 2858375 can no longer be monitored (due to stat problems) - aborting
[2026-03-07 20:21:03] 2026-03-08 01:20:30,523 | INFO     | using path: /home/whitlerd/Desktop/BOINC/slots/82/PanDA_Pilot-7045392605/memory_monitor_summary.json (trf name=prmon)
[2026-03-07 20:21:03] 2026-03-08 01:20:30,523 | INFO     | using path: /home/whitlerd/Desktop/BOINC/slots/82/PanDA_Pilot-7045392605/memory_monitor_summary.json (trf name=prmon)
[2026-03-07 20:21:03] 2026-03-08 01:20:30,524 | WARNING  | memory limits not set in config, using defaults: 'NoneType' object has no attribute 'get'
[2026-03-07 20:21:03] 2026-03-08 01:20:30,524 | WARNING  | maxPSS not found in memory monitor output
[2026-03-07 20:21:03] 2026-03-08 01:20:30,524 | INFO     | payload log (log.EVNTtoHITS) within allowed size limit (2147483648 B): 2634076 B
[2026-03-07 20:21:03] 2026-03-08 01:20:30,524 | INFO     | payload log (payload.stdout) within allowed size limit (2147483648 B): 15375 B
[2026-03-07 20:21:03] 2026-03-08 01:20:30,525 | INFO     | executing command: df -mP /home/whitlerd/Desktop/BOINC/slots/82
[2026-03-07 20:21:03] 2026-03-08 01:20:30,547 | INFO     | sufficient remaining disk space (379218558976 B)
[2026-03-07 20:21:03] 2026-03-08 01:20:30,547 | INFO     | work directory size check will use 5033164800 B as a max limit (20% grace limit added, divider=1)
[2026-03-07 20:21:03] 2026-03-08 01:20:30,548 | INFO     | size of work directory /home/whitlerd/Desktop/BOINC/slots/82/PanDA_Pilot-7045392605: 2999646 B (within 5033164800 B limit)
[2026-03-07 20:21:03] 2026-03-08 01:20:30,548 | INFO     | pfn file=/home/whitlerd/Desktop/BOINC/slots/82/PanDA_Pilot-7045392605/HITS.48958610._001221.pool.root.1 does not exist (skip from workdir size calculation)
[2026-03-07 20:21:03] 2026-03-08 01:20:30,548 | INFO     | total size of present files: 0 B (workdir size: 2999646 B)
[2026-03-07 20:21:03] 2026-03-08 01:20:30,549 | INFO     | output file size check: skipping output file /home/whitlerd/Desktop/BOINC/slots/82/PanDA_Pilot-7045392605/HITS.48958610._001221.pool.root.1 since it does not exist
[2026-03-07 20:21:03] 2026-03-08 01:20:30,837 | INFO     | 
[2026-03-07 20:21:03] 2026-03-08 01:20:30,837 | INFO     | job summary report
[2026-03-07 20:21:03] 2026-03-08 01:20:30,837 | INFO     | --------------------------------------------------
[2026-03-07 20:21:03] 2026-03-08 01:20:30,837 | INFO     | PanDA job id: 7045392605
[2026-03-07 20:21:03] 2026-03-08 01:20:30,837 | INFO     | task id: 48958610
[2026-03-07 20:21:03] 2026-03-08 01:20:30,837 | INFO     | errors: (none)
[2026-03-07 20:21:03] 2026-03-08 01:20:30,837 | INFO     | status: LOG_TRANSFER = DONE 
[2026-03-07 20:21:03] 2026-03-08 01:20:30,838 | INFO     | pilot state: finished 
[2026-03-07 20:21:03] 2026-03-08 01:20:30,838 | INFO     | transexitcode: 0
[2026-03-07 20:21:03] 2026-03-08 01:20:30,838 | INFO     | exeerrorcode: 0
[2026-03-07 20:21:03] 2026-03-08 01:20:30,838 | INFO     | exeerrordiag: 
[2026-03-07 20:21:03] 2026-03-08 01:20:30,838 | INFO     | exitcode: 0
[2026-03-07 20:21:03] 2026-03-08 01:20:30,838 | INFO     | exitmsg: OK
[2026-03-07 20:21:03] 2026-03-08 01:20:30,838 | INFO     | cpuconsumptiontime: 33921 s
[2026-03-07 20:21:03] 2026-03-08 01:20:30,838 | INFO     | nevents: 400
[2026-03-07 20:21:03] 2026-03-08 01:20:30,839 | INFO     | neventsw: 0
[2026-03-07 20:21:03] 2026-03-08 01:20:30,839 | INFO     | pid: 2858375
[2026-03-07 20:21:03] 2026-03-08 01:20:30,839 | INFO     | pgrp: 2858375
[2026-03-07 20:21:03] 2026-03-08 01:20:30,839 | INFO     | corecount: 4
[2026-03-07 20:21:03] 2026-03-08 01:20:30,839 | INFO     | event service: False
[2026-03-07 20:21:03] 2026-03-08 01:20:30,839 | INFO     | sizes: {0: 2294672, 1: 2295805, 12: 2295805, 8750: 2323770, 8753: 2332798, 8754: 2332854, 8756: 2333176}
[2026-03-07 20:21:03] 2026-03-08 01:20:30,839 | INFO     | --------------------------------------------------
[2026-03-07 20:21:03] 2026-03-08 01:20:30,839 | INFO     | 
[2026-03-07 20:21:03] 2026-03-08 01:20:30,839 | INFO     | executing command: ls -lF /home/whitlerd/Desktop/BOINC/slots/82
[2026-03-07 20:21:03] 2026-03-08 01:20:30,871 | INFO     | queue jobs had 0 job(s) [purged]
[2026-03-07 20:21:03] 2026-03-08 01:20:30,872 | INFO     | queue payloads had 0 job(s) [purged]
[2026-03-07 20:21:03] 2026-03-08 01:20:30,872 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-07 20:21:03] 2026-03-08 01:20:30,872 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-07 20:21:03] 2026-03-08 01:20:30,872 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-07 20:21:03] 2026-03-08 01:20:30,872 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-07 20:21:03] 2026-03-08 01:20:30,872 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-07 20:21:03] 2026-03-08 01:20:30,872 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-07 20:21:03] 2026-03-08 01:20:30,872 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-07 20:21:03] 2026-03-08 01:20:30,873 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-07 20:21:03] 2026-03-08 01:20:30,873 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-07 20:21:03] 2026-03-08 01:20:30,873 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-07 20:21:03] 2026-03-08 01:20:30,873 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-07 20:21:03] 2026-03-08 01:20:30,873 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-07 20:21:03] 2026-03-08 01:20:30,873 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-07 20:21:03] 2026-03-08 01:20:30,873 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-07 20:21:03] 2026-03-08 01:20:30,873 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-07 20:21:03] 2026-03-08 01:20:30,873 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-07 20:21:03] 2026-03-08 01:20:30,874 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-07 20:21:03] 2026-03-08 01:20:30,874 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-07 20:21:03] 2026-03-08 01:20:30,874 | INFO     | job 7045392605 has completed (purged errors)
[2026-03-07 20:21:03] 2026-03-08 01:20:30,874 | INFO     | overall cleanup function is called
[2026-03-07 20:21:03] 2026-03-08 01:20:31,005 | INFO     | number of running child processes to parent process 2858375: 1
[2026-03-07 20:21:03] 2026-03-08 01:20:31,005 | INFO     | maximum number of monitored processes: 6
[2026-03-07 20:21:03] 2026-03-08 01:20:31,005 | INFO     | aborting job monitoring since job object (job id=7045392605) has expired
[2026-03-07 20:21:03] 2026-03-08 01:20:31,884 | INFO     | --- collectZombieJob: --- 10, [2858375]
[2026-03-07 20:21:03] 2026-03-08 01:20:31,885 | INFO     | zombie collector waiting for pid 2858375
[2026-03-07 20:21:03] 2026-03-08 01:20:31,885 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-07 20:21:03] 2026-03-08 01:20:31,885 | INFO     | collected zombie processes
[2026-03-07 20:21:03] 2026-03-08 01:20:31,885 | INFO     | will attempt to kill all subprocesses of pid=2858375
[2026-03-07 20:21:03] 2026-03-08 01:20:32,355 | INFO     | process IDs to be killed: [2858375] (in reverse order)
[2026-03-07 20:21:03] 2026-03-08 01:20:32,508 | WARNING  | found no corresponding commands to process id(s)
[2026-03-07 20:21:03] 2026-03-08 01:20:32,508 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-07 20:21:03] 2026-03-08 01:20:32,518 | INFO     | did not find any defunct processes belonging to 2858375
[2026-03-07 20:21:03] 2026-03-08 01:20:32,526 | INFO     | did not find any defunct processes belonging to 2858375
[2026-03-07 20:21:03] 2026-03-08 01:20:32,527 | INFO     | ready for new job
[2026-03-07 20:21:03] 2026-03-08 01:20:32,527 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-07 20:21:03] 2026-03-08 01:20:32,528 | INFO     | **************************************
[2026-03-07 20:21:03] 2026-03-08 01:20:32,528 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-03-07 20:21:03] 2026-03-08 01:20:32,528 | INFO     | **************************************
[2026-03-07 20:21:03] 2026-03-08 01:20:32,528 | INFO     | 
[2026-03-07 20:21:03] 2026-03-08 01:20:32,535 | INFO     | architecture information:
[2026-03-07 20:21:03] 2026-03-08 01:20:32,535 | INFO     | executing command: cat /etc/os-release
[2026-03-07 20:21:03] 2026-03-08 01:20:32,549 | INFO     | cat /etc/os-release:
[2026-03-07 20:21:03] NAME="CentOS Linux"
[2026-03-07 20:21:03] VERSION="7 (Core)"
[2026-03-07 20:21:03] ID="centos"
[2026-03-07 20:21:03] ID_LIKE="rhel fedora"
[2026-03-07 20:21:03] VERSION_ID="7"
[2026-03-07 20:21:03] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-07 20:21:03] ANSI_COLOR="0;31"
[2026-03-07 20:21:03] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-07 20:21:03] HOME_URL="https://www.centos.org/"
[2026-03-07 20:21:03] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-07 20:21:03] 
[2026-03-07 20:21:03] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-07 20:21:03] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-07 20:21:03] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-07 20:21:03] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-07 20:21:03] 
[2026-03-07 20:21:03] 2026-03-08 01:20:32,549 | INFO     | **************************************
[2026-03-07 20:21:03] 2026-03-08 01:20:33,052 | INFO     | executing command: df -mP /home/whitlerd/Desktop/BOINC/slots/82
[2026-03-07 20:21:03] 2026-03-08 01:20:33,075 | INFO     | sufficient remaining disk space (379222753280 B)
[2026-03-07 20:21:03] 2026-03-08 01:20:33,076 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-07 20:21:03] 2026-03-08 01:20:33,076 | INFO     | current server update state: UPDATING_FINAL
[2026-03-07 20:21:03] 2026-03-08 01:20:33,076 | INFO     | update_server=False
[2026-03-07 20:21:03] 2026-03-08 01:20:33,076 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-07 20:21:03] 2026-03-08 01:20:33,078 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-07 20:21:03] 2026-03-08 01:20:33,256 | INFO     | all payload control threads have been joined
[2026-03-07 20:21:03] 2026-03-08 01:20:33,508 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-03-07 20:21:03] 2026-03-08 01:20:33,508 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-03-07 20:21:03] 2026-03-08 01:20:33,508 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-07 20:21:03] 2026-03-08 01:20:33,508 | INFO     | will abort loop
[2026-03-07 20:21:03] 2026-03-08 01:20:33,868 | INFO     | all job control threads have been joined
[2026-03-07 20:21:03] 2026-03-08 01:20:34,052 | INFO     | all data control threads have been joined
[2026-03-07 20:21:03] 2026-03-08 01:20:34,081 | INFO     | [job] retrieve thread has finished
[2026-03-07 20:21:03] 2026-03-08 01:20:34,251 | INFO     | [data] copytool_in thread has finished
[2026-03-07 20:21:03] 2026-03-08 01:20:34,261 | INFO     | [payload] control thread has finished
[2026-03-07 20:21:03] 2026-03-08 01:20:34,445 | INFO     | [payload] execute_payloads thread has finished
[2026-03-07 20:21:03] 2026-03-08 01:20:34,514 | INFO     | [job] job monitor thread has finished
[2026-03-07 20:21:03] 2026-03-08 01:20:34,770 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-07 20:21:03] 2026-03-08 01:20:34,874 | INFO     | [job] control thread has finished
[2026-03-07 20:21:03] 2026-03-08 01:20:34,904 | INFO     | [job] validate thread has finished
[2026-03-07 20:21:03] 2026-03-08 01:20:35,006 | INFO     | [payload] failed_post thread has finished
[2026-03-07 20:21:03] 2026-03-08 01:20:35,057 | INFO     | [data] control thread has finished
[2026-03-07 20:21:03] 2026-03-08 01:20:35,083 | INFO     | [data] copytool_out thread has finished
[2026-03-07 20:21:03] 2026-03-08 01:20:35,133 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-07 20:21:03] 2026-03-08 01:20:35,247 | INFO     | [job] create_data_payload thread has finished
[2026-03-07 20:21:03] 2026-03-08 01:20:35,413 | INFO     | [payload] validate_pre thread has finished
[2026-03-07 20:21:03] 2026-03-08 01:20:35,469 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-07 20:21:03] 2026-03-08 01:20:35,484 | INFO     | [payload] validate_post thread has finished
[2026-03-07 20:21:03] 2026-03-08 01:20:35,754 | INFO     | [monitor] cgroup control has ended
[2026-03-07 20:21:03] 2026-03-08 01:20:36,474 | INFO     | [job] queue monitor thread has finished
[2026-03-07 20:21:03] 2026-03-08 01:20:38,776 | INFO     | [data] queue_monitor thread has finished
[2026-03-07 20:21:03] 2026-03-08 01:20:40,301 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 130516658399040)>', '<ExcThread(monitor, started 130515734624000)>']
[2026-03-07 20:21:03] 2026-03-08 01:20:45,327 | INFO     | all workflow threads have been joined
[2026-03-07 20:21:03] 2026-03-08 01:20:45,327 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-07 20:21:03] 2026-03-08 01:20:45,327 | INFO     | traces error code: 0
[2026-03-07 20:21:03] 2026-03-08 01:20:45,327 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-07 20:21:03] 2026-03-08 01:21:03,444 | INFO     | PID=2853388 has CPU usage=8.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-03-07 20:21:03] 2026-03-08 01:21:03,445 | INFO     | .. there are 3 such processes running
[2026-03-07 20:21:03] 2026-03-08 01:21:03,445 | INFO     | found 0 job(s) in 20 queues
[2026-03-07 20:21:03] 2026-03-08 01:21:03,445 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-07 20:21:03] 2026-03-08 01:21:03,445 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-07 20:21:03] 2026-03-08 01:21:03,445 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-07 20:21:03] 2026-03-08 01:21:03,445 | INFO     | [monitor] control thread has ended
[2026-03-07 20:21:03] 2026-03-08 01:21:03,580 [wrapper] ==== pilot stdout END ====
[2026-03-07 20:21:03] 2026-03-08 01:21:03,584 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-07 20:21:03] 2026-03-08 01:21:03,588 [wrapper] pilotpid: 2853388
[2026-03-07 20:21:03] 2026-03-08 01:21:03,592 [wrapper] Pilot exit status: 0
[2026-03-07 20:21:03] 2026-03-08 01:21:03,605 [wrapper] pandaids: 7045392605
[2026-03-07 20:21:03] 2026-03-08 01:21:03,714 [wrapper] cleanup supervisor_pilot 2899665 2853389
[2026-03-07 20:21:03] 2026-03-08 01:21:03,718 [wrapper] Test setup, not cleaning
[2026-03-07 20:21:03] 2026-03-08 01:21:03,722 [wrapper] apfmon messages muted
[2026-03-07 20:21:03] 2026-03-08 01:21:03,726 [wrapper] ==== wrapper stdout END ====
[2026-03-07 20:21:03] 2026-03-08 01:21:03,731 [wrapper] ==== wrapper stderr END ====
[2026-03-07 20:21:03]  *** Error codes and diagnostics ***
[2026-03-07 20:21:03]     "exeErrorCode": 0,
[2026-03-07 20:21:03]     "exeErrorDiag": "",
[2026-03-07 20:21:03]     "pilotErrorCode": 0,
[2026-03-07 20:21:03]     "pilotErrorDiag": "",
[2026-03-07 20:21:03]  *** Listing of results directory ***
[2026-03-07 20:21:03] total 436828
[2026-03-07 20:21:03] -rw-r--r-- 1 whitlerd whitlerd    584627 Mar  7 13:53 pilot3.tar.gz
[2026-03-07 20:21:03] -rwx------ 1 whitlerd whitlerd     36322 Mar  7 13:53 runpilot2-wrapper.sh
[2026-03-07 20:21:03] -rw-r--r-- 1 whitlerd whitlerd      5111 Mar  7 13:53 queuedata.json
[2026-03-07 20:21:03] -rw-rw-r-- 1 whitlerd whitlerd       100 Mar  7 17:54 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-07 20:21:03] -rwxr-xr-x 1 whitlerd whitlerd      7986 Mar  7 17:54 run_atlas
[2026-03-07 20:21:03] -rw-rw-r-- 1 whitlerd whitlerd       105 Mar  7 17:54 job.xml
[2026-03-07 20:21:03] -rw-r--r-- 2 whitlerd whitlerd 262430562 Mar  7 17:54 EVNT.48958608._000049.pool.root.1
[2026-03-07 20:21:03] -rw-r--r-- 2 whitlerd whitlerd     15845 Mar  7 17:54 start_atlas.sh
[2026-03-07 20:21:03] drwxrwx--x 2 whitlerd whitlerd      4096 Mar  7 17:54 shared
[2026-03-07 20:21:03] -rw-r--r-- 2 whitlerd whitlerd    597936 Mar  7 17:54 input.tar.gz
[2026-03-07 20:21:03] -rw-rw-r-- 1 whitlerd whitlerd         0 Mar  7 17:54 boinc_setup_complete
[2026-03-07 20:21:03] -rw-rw-r-- 1 whitlerd whitlerd      9566 Mar  7 17:54 init_data.xml
[2026-03-07 20:21:03] -rw-rw-r-- 1 whitlerd whitlerd         0 Mar  7 17:54 boinc_lockfile
[2026-03-07 20:21:03] -rw-rw-r-- 1 whitlerd whitlerd      2527 Mar  7 17:54 pandaJob.out
[2026-03-07 20:21:03] -rw------- 1 whitlerd whitlerd    999169 Mar  7 17:54 agis_schedconf.cvmfs.json
[2026-03-07 20:21:03] -rw------- 1 whitlerd whitlerd   1521291 Mar  7 17:54 agis_ddmendpoints.agis.ALL.json
[2026-03-07 20:21:03] -rw------- 1 whitlerd whitlerd       424 Mar  7 17:54 workernode_map.json
[2026-03-07 20:21:03] drwx------ 5 whitlerd whitlerd      4096 Mar  7 17:54 pilot3
[2026-03-07 20:21:03] -rw------- 1 whitlerd whitlerd 177799291 Mar  7 20:19 HITS.48958610._001221.pool.root.1
[2026-03-07 20:21:03] -rw-rw-r-- 1 whitlerd whitlerd       529 Mar  7 20:19 boinc_task_state.xml
[2026-03-07 20:21:03] -rw------- 1 whitlerd whitlerd        95 Mar  7 20:20 pilot_heartbeat.json
[2026-03-07 20:21:03] -rw------- 1 whitlerd whitlerd      1021 Mar  7 20:20 memory_monitor_summary.json
[2026-03-07 20:21:03] -rw------- 1 whitlerd whitlerd    331843 Mar  7 20:20 log.48958610._001221.job.log.tgz.1
[2026-03-07 20:21:03] -rw------- 1 whitlerd whitlerd      6281 Mar  7 20:20 heartbeat.json
[2026-03-07 20:21:03] -rw-rw-r-- 1 whitlerd whitlerd        27 Mar  7 20:20 wrapper_checkpoint.txt
[2026-03-07 20:21:03] -rw-rw-r-- 1 whitlerd whitlerd      8192 Mar  7 20:20 boinc_mmap_file
[2026-03-07 20:21:03] -rw------- 1 whitlerd whitlerd       822 Mar  7 20:21 pilotlog.txt
[2026-03-07 20:21:03] -rw------- 1 whitlerd whitlerd   1240017 Mar  7 20:21 log.48958610._001221.job.log.1
[2026-03-07 20:21:03] -rw------- 1 whitlerd whitlerd       357 Mar  7 20:21 output.list
[2026-03-07 20:21:03] -rw-rw-r-- 1 whitlerd whitlerd       620 Mar  7 20:21 runtime_log
[2026-03-07 20:21:03] -rw------- 1 whitlerd whitlerd   1587200 Mar  7 20:21 result.tar.gz
[2026-03-07 20:21:03] -rw------- 1 whitlerd whitlerd       648 Mar  7 20:21 vGnKDmMxBJ9nsSi4ap6QjLDmwznN0nGgGQJmIVkRDmvoWLDmjltQPo.diag
[2026-03-07 20:21:03] -rw-rw-r-- 1 whitlerd whitlerd      9040 Mar  7 20:21 runtime_log.err
[2026-03-07 20:21:03] -rw-rw-r-- 1 whitlerd whitlerd     21945 Mar  7 20:21 stderr.txt
[2026-03-07 20:21:03] HITS file was successfully produced:
[2026-03-07 20:21:03] -rw------- 1 whitlerd whitlerd 177799291 Mar  7 20:19 shared/HITS.pool.root.1
[2026-03-07 20:21:03]  *** Contents of shared directory: ***
[2026-03-07 20:21:03] total 432076
[2026-03-07 20:21:03] -rw-r--r-- 2 whitlerd whitlerd 262430562 Mar  7 17:54 ATLAS.root_0
[2026-03-07 20:21:03] -rw-r--r-- 2 whitlerd whitlerd     15845 Mar  7 17:54 start_atlas.sh
[2026-03-07 20:21:03] -rw-r--r-- 2 whitlerd whitlerd    597936 Mar  7 17:54 input.tar.gz
[2026-03-07 20:21:03] -rw------- 1 whitlerd whitlerd 177799291 Mar  7 20:19 HITS.pool.root.1
[2026-03-07 20:21:03] -rw------- 1 whitlerd whitlerd   1587200 Mar  7 20:21 result.tar.gz
20:21:05 (2849136): run_atlas exited; CPU time 34366.531754
20:21:05 (2849136): called boinc_finish(0)

</stderr_txt>
]]>

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