Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
00:18:56 (1338486): wrapper (7.7.26015): starting
00:18:56 (1338486): wrapper: running run_atlas (--nthreads 4)
[2026-03-08 00:18:56] Arguments: --nthreads 4
[2026-03-08 00:18:56] Threads: 4
[2026-03-08 00:18:56] Checking for CVMFS
[2026-03-08 00:18:56] No cvmfs_config command found, will try listing directly
[2026-03-08 00:18:56] CVMFS is ok
[2026-03-08 00:18:56] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-08 00:18:56] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-08 00:18:56] Further information can be found at the LHC@home message board.
[2026-03-08 00:18:56] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-08 00:18:56] Checking for apptainer binary...
[2026-03-08 00:18:56] which: no apptainer in ((null))
[2026-03-08 00:18:56] apptainer is not installed, using version from CVMFS
[2026-03-08 00:18:56] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-08 00:18:56] WARNING: Environment variable TMPDIR already has value [/var/lib/boinc/var/slot88/slots/2/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut26.grid.cesnet.cz
[2026-03-08 00:18:56] apptainer works
[2026-03-08 00:18:56] Set ATHENA_PROC_NUMBER=4
[2026-03-08 00:18:56] Set ATHENA_CORE_NUMBER=4
[2026-03-08 00:18:56] Starting ATLAS job with PandaID=7038812045
[2026-03-08 00:18:56] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc/var/slot88/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-08 01:39:22]  *** The last 200 lines of the pilot log: ***
[2026-03-08 01:39:22]  filesize=256384
[2026-03-08 01:39:22]  filetype=log
[2026-03-08 01:39:22]  guid=b67e1bbd-5ce2-4e1b-8128-62698b4d3485
[2026-03-08 01:39:22]  inputddms=['NDGF-T1_DATADISK', 'CERN-PROD_DATADISK']
[2026-03-08 01:39:22]  is_altstaged=None
[2026-03-08 01:39:22]  is_tar=False
[2026-03-08 01:39:22]  lfn=log.48955006._012505.job.log.tgz.1
[2026-03-08 01:39:22]  mtime=0
[2026-03-08 01:39:22]  protocol_id=None
[2026-03-08 01:39:22]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2026-03-08 01:39:22]  replicas=None
[2026-03-08 01:39:22]  scope=mc23_13p6TeV
[2026-03-08 01:39:22]  status=None
[2026-03-08 01:39:22]  status_code=0
[2026-03-08 01:39:22]  storage_token=
[2026-03-08 01:39:22]  surl=/var/lib/boinc/var/slot88/slots/2/PanDA_Pilot-7038812045/log.48955006._012505.job.log.tgz.1
[2026-03-08 01:39:22]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/9f/9d/log.48955006._012505.job.log.tgz.1
[2026-03-08 01:39:22]  workdir=None
[2026-03-08 01:39:22] ]
[2026-03-08 01:39:22] 2026-03-08 00:38:22,587 | INFO     | transferring file log.48955006._012505.job.log.tgz.1 from /var/lib/boinc/var/slot88/slots/2/PanDA_Pilot-7038812045/log.48955006._012505.job.log.tgz.1 to /var/lib/b
[2026-03-08 01:39:22] 2026-03-08 00:38:22,587 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc/var/slot88/slots/2/PanDA_Pilot-7038812045/log.48955006._012505.job.log.tgz.1 /var/lib/boinc/var/slot88/slots/2/lo
[2026-03-08 01:39:22] 2026-03-08 00:38:22,600 | INFO     | adding to output.list: log.48955006._012505.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/9f/9d/log.48955006._012505.job.log.tg
[2026-03-08 01:39:22] 2026-03-08 00:38:22,601 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-03-08 01:39:22] 2026-03-08 00:38:22,601 | INFO     | summary of transferred files:
[2026-03-08 01:39:22] 2026-03-08 00:38:22,601 | INFO     |  -- lfn=log.48955006._012505.job.log.tgz.1, status_code=0, status=transferred
[2026-03-08 01:39:22] 2026-03-08 00:38:22,601 | INFO     | stage-out finished correctly
[2026-03-08 01:39:22] 2026-03-08 00:38:23,333 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-03-08 01:39:22] 2026-03-08 00:38:23,384 | INFO     | job 7038812045 has state=finished
[2026-03-08 01:39:22] 2026-03-08 00:38:23,384 | INFO     | preparing for final server update for job 7038812045 in state='finished'
[2026-03-08 01:39:22] 2026-03-08 00:38:23,384 | INFO     | reading metadata from: /var/lib/boinc/var/slot88/slots/2/PanDA_Pilot-7038812045/jobReport.json
[2026-03-08 01:39:22] 2026-03-08 00:38:23,386 | INFO     | added worker_node to metadata from /var/lib/boinc/var/slot88/slots/2/workernode_map.json
[2026-03-08 01:39:22] 2026-03-08 00:38:23,387 | INFO     | this job has now completed (state=finished)
[2026-03-08 01:39:22] 2026-03-08 00:38:23,387 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-03-08 01:39:22] 2026-03-08 00:38:23,387 | INFO     | log transfer has been attempted: DONE
[2026-03-08 01:39:22] 2026-03-08 00:38:23,387 | INFO     | job 7038812045 has finished - writing final server update
[2026-03-08 01:39:22] 2026-03-08 00:38:23,387 | WARNING  | failed to read HTCondor job classAd: [Errno 2] No such file or directory: '/scratch/condor/execute/dir_3778694/.job.ad'
[2026-03-08 01:39:22] 2026-03-08 00:38:23,387 | INFO     | total number of processed events: 400 (read)
[2026-03-08 01:39:22] 2026-03-08 00:38:23,405 | INFO     | using path: /var/lib/boinc/var/slot88/slots/2/PanDA_Pilot-7038812045/memory_monitor_summary.json (trf name=prmon)
[2026-03-08 01:39:22] 2026-03-08 00:38:23,405 | INFO     | extracted standard info from prmon json
[2026-03-08 01:39:22] 2026-03-08 00:38:23,405 | INFO     | extracted standard memory fields from prmon json
[2026-03-08 01:39:22] 2026-03-08 00:38:23,405 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-03-08 01:39:22] 2026-03-08 00:38:23,406 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-03-08 01:39:22] 2026-03-08 00:38:23,406 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-03-08 01:39:22] 2026-03-08 00:38:23,407 | INFO     | fitting pss+swap vs Time
[2026-03-08 01:39:22] 2026-03-08 00:38:23,407 | INFO     | sum of square deviations: 110960220.0
[2026-03-08 01:39:22] 2026-03-08 00:38:23,407 | INFO     | sum of deviations: -240909496.00000003
[2026-03-08 01:39:22] 2026-03-08 00:38:23,407 | INFO     | mean x: 1772928009.0
[2026-03-08 01:39:22] 2026-03-08 00:38:23,407 | INFO     | mean y: 2339000.267605634
[2026-03-08 01:39:22] 2026-03-08 00:38:23,407 | INFO     | intersect: 3851603115.75398
[2026-03-08 01:39:22] 2026-03-08 00:38:23,407 | INFO     | chi2: 0.0001920588778522875
[2026-03-08 01:39:22] 2026-03-08 00:38:23,407 | INFO     | current memory leak: -2.17 B/s (using 71 data points, chi2=0.00)
[2026-03-08 01:39:22] 2026-03-08 00:38:23,408 | INFO     | could have reported an average CPU frequency of 3585 MHz (6 samples)
[2026-03-08 01:39:22] 2026-03-08 00:38:23,408 | INFO     | ..............................
[2026-03-08 01:39:22] 2026-03-08 00:38:23,408 | INFO     | . Timing measurements:
[2026-03-08 01:39:22] 2026-03-08 00:38:23,408 | INFO     | . get job = 0 s
[2026-03-08 01:39:22] 2026-03-08 00:38:23,408 | INFO     | . initial setup = 4 s
[2026-03-08 01:39:22] 2026-03-08 00:38:23,408 | INFO     | . payload setup = 4 s
[2026-03-08 01:39:22] 2026-03-08 00:38:23,408 | INFO     | . stage-in = 0 s
[2026-03-08 01:39:22] 2026-03-08 00:38:23,408 | INFO     | . payload execution = 4734 s
[2026-03-08 01:39:22] 2026-03-08 00:38:23,408 | INFO     | . stage-out = 0 s
[2026-03-08 01:39:22] 2026-03-08 00:38:23,408 | INFO     | . log creation = 0 s
[2026-03-08 01:39:22] 2026-03-08 00:38:23,408 | INFO     | ..............................
[2026-03-08 01:39:22] 2026-03-08 00:38:23,457 | INFO     | 
[2026-03-08 01:39:22] 2026-03-08 00:38:23,458 | INFO     | job summary report
[2026-03-08 01:39:22] 2026-03-08 00:38:23,458 | INFO     | --------------------------------------------------
[2026-03-08 01:39:22] 2026-03-08 00:38:23,458 | INFO     | PanDA job id: 7038812045
[2026-03-08 01:39:22] 2026-03-08 00:38:23,458 | INFO     | task id: 48955006
[2026-03-08 01:39:22] 2026-03-08 00:38:23,458 | INFO     | errors: (none)
[2026-03-08 01:39:22] 2026-03-08 00:38:23,458 | INFO     | status: LOG_TRANSFER = DONE 
[2026-03-08 01:39:22] 2026-03-08 00:38:23,458 | INFO     | pilot state: finished 
[2026-03-08 01:39:22] 2026-03-08 00:38:23,458 | INFO     | transexitcode: 0
[2026-03-08 01:39:22] 2026-03-08 00:38:23,458 | INFO     | exeerrorcode: 0
[2026-03-08 01:39:22] 2026-03-08 00:38:23,458 | INFO     | exeerrordiag: 
[2026-03-08 01:39:22] 2026-03-08 00:38:23,458 | INFO     | exitcode: 0
[2026-03-08 01:39:22] 2026-03-08 00:38:23,458 | INFO     | exitmsg: OK
[2026-03-08 01:39:22] 2026-03-08 00:38:23,458 | INFO     | cpuconsumptiontime: 18015 s
[2026-03-08 01:39:22] 2026-03-08 00:38:23,458 | INFO     | nevents: 400
[2026-03-08 01:39:22] 2026-03-08 00:38:23,458 | INFO     | neventsw: 0
[2026-03-08 01:39:22] 2026-03-08 00:38:23,458 | INFO     | pid: 1349093
[2026-03-08 01:39:22] 2026-03-08 00:38:23,458 | INFO     | pgrp: 1349093
[2026-03-08 01:39:22] 2026-03-08 00:38:23,458 | INFO     | corecount: 4
[2026-03-08 01:39:22] 2026-03-08 00:38:23,458 | INFO     | event service: False
[2026-03-08 01:39:22] 2026-03-08 00:38:23,458 | INFO     | sizes: {0: 2295381, 1: 2295842, 11: 2295842, 4743: 2331118, 4744: 2331312}
[2026-03-08 01:39:22] 2026-03-08 00:38:23,458 | INFO     | --------------------------------------------------
[2026-03-08 01:39:22] 2026-03-08 00:38:23,458 | INFO     | 
[2026-03-08 01:39:22] 2026-03-08 00:38:23,458 | INFO     | executing command: ls -lF /var/lib/boinc/var/slot88/slots/2
[2026-03-08 01:39:22] 2026-03-08 00:38:23,480 | INFO     | queue jobs had 0 job(s) [purged]
[2026-03-08 01:39:22] 2026-03-08 00:38:23,481 | INFO     | queue payloads had 0 job(s) [purged]
[2026-03-08 01:39:22] 2026-03-08 00:38:23,481 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-08 01:39:22] 2026-03-08 00:38:23,481 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-08 01:39:22] 2026-03-08 00:38:23,481 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-08 01:39:22] 2026-03-08 00:38:23,481 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-08 01:39:22] 2026-03-08 00:38:23,481 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-08 01:39:22] 2026-03-08 00:38:23,481 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-08 01:39:22] 2026-03-08 00:38:23,481 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-08 01:39:22] 2026-03-08 00:38:23,481 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-08 01:39:22] 2026-03-08 00:38:23,481 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-08 01:39:22] 2026-03-08 00:38:23,481 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-08 01:39:22] 2026-03-08 00:38:23,481 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-08 01:39:22] 2026-03-08 00:38:23,481 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-08 01:39:22] 2026-03-08 00:38:23,481 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-08 01:39:22] 2026-03-08 00:38:23,481 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-08 01:39:22] 2026-03-08 00:38:23,481 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-08 01:39:22] 2026-03-08 00:38:23,481 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-08 01:39:22] 2026-03-08 00:38:23,481 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-08 01:39:22] 2026-03-08 00:38:23,481 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-08 01:39:22] 2026-03-08 00:38:23,482 | INFO     | job 7038812045 has completed (purged errors)
[2026-03-08 01:39:22] 2026-03-08 00:38:23,482 | INFO     | overall cleanup function is called
[2026-03-08 01:39:22] 2026-03-08 00:38:24,488 | INFO     | --- collectZombieJob: --- 10, [1349093]
[2026-03-08 01:39:22] 2026-03-08 00:38:24,489 | INFO     | zombie collector waiting for pid 1349093
[2026-03-08 01:39:22] 2026-03-08 00:38:24,489 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-08 01:39:22] 2026-03-08 00:38:24,489 | INFO     | collected zombie processes
[2026-03-08 01:39:22] 2026-03-08 00:38:24,489 | INFO     | will attempt to kill all subprocesses of pid=1349093
[2026-03-08 01:39:22] 2026-03-08 00:38:24,945 | INFO     | process IDs to be killed: [1349093] (in reverse order)
[2026-03-08 01:39:22] 2026-03-08 00:38:25,162 | WARNING  | found no corresponding commands to process id(s)
[2026-03-08 01:39:22] 2026-03-08 00:38:25,162 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-08 01:39:22] 2026-03-08 00:38:25,191 | INFO     | did not find any defunct processes belonging to 1349093
[2026-03-08 01:39:22] 2026-03-08 00:38:25,219 | INFO     | did not find any defunct processes belonging to 1349093
[2026-03-08 01:39:22] 2026-03-08 00:38:25,220 | INFO     | ready for new job
[2026-03-08 01:39:22] 2026-03-08 00:38:25,220 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-08 01:39:22] 2026-03-08 00:38:25,221 | INFO     | **************************************
[2026-03-08 01:39:22] 2026-03-08 00:38:25,221 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-03-08 01:39:22] 2026-03-08 00:38:25,221 | INFO     | **************************************
[2026-03-08 01:39:22] 2026-03-08 00:38:25,221 | INFO     | 
[2026-03-08 01:39:22] 2026-03-08 00:38:25,227 | INFO     | architecture information:
[2026-03-08 01:39:22] 2026-03-08 00:38:25,227 | INFO     | executing command: cat /etc/os-release
[2026-03-08 01:39:22] 2026-03-08 00:38:25,240 | INFO     | cat /etc/os-release:
[2026-03-08 01:39:22] NAME="CentOS Linux"
[2026-03-08 01:39:22] VERSION="7 (Core)"
[2026-03-08 01:39:22] ID="centos"
[2026-03-08 01:39:22] ID_LIKE="rhel fedora"
[2026-03-08 01:39:22] VERSION_ID="7"
[2026-03-08 01:39:22] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-08 01:39:22] ANSI_COLOR="0;31"
[2026-03-08 01:39:22] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-08 01:39:22] HOME_URL="https://www.centos.org/"
[2026-03-08 01:39:22] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-08 01:39:22] 
[2026-03-08 01:39:22] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-08 01:39:22] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-08 01:39:22] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-08 01:39:22] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-08 01:39:22] 
[2026-03-08 01:39:22] 2026-03-08 00:38:25,240 | INFO     | **************************************
[2026-03-08 01:39:22] 2026-03-08 00:38:25,743 | INFO     | executing command: df -mP /var/lib/boinc/var/slot88/slots/2
[2026-03-08 01:39:22] 2026-03-08 00:38:25,759 | INFO     | sufficient remaining disk space (20131610624 B)
[2026-03-08 01:39:22] 2026-03-08 00:38:25,759 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-08 01:39:22] 2026-03-08 00:38:25,759 | INFO     | current server update state: UPDATING_FINAL
[2026-03-08 01:39:22] 2026-03-08 00:38:25,759 | INFO     | update_server=False
[2026-03-08 01:39:22] 2026-03-08 00:38:25,760 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-08 01:39:22] 2026-03-08 00:38:25,760 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-08 01:39:22] 2026-03-08 00:38:25,760 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-08 01:39:22] 2026-03-08 00:38:25,948 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-03-08 01:39:22] 2026-03-08 00:38:25,949 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-03-08 01:39:22] 2026-03-08 00:38:25,949 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-08 01:39:22] 2026-03-08 00:38:25,949 | INFO     | will abort loop
[2026-03-08 01:39:22] 2026-03-08 00:38:25,956 | INFO     | all job control threads have been joined
[2026-03-08 01:39:22] 2026-03-08 00:38:26,457 | INFO     | all payload control threads have been joined
[2026-03-08 01:39:22] 2026-03-08 00:38:26,765 | INFO     | [job] retrieve thread has finished
[2026-03-08 01:39:22] 2026-03-08 00:38:26,853 | INFO     | all data control threads have been joined
[2026-03-08 01:39:22] 2026-03-08 00:38:26,954 | INFO     | [job] job monitor thread has finished
[2026-03-08 01:39:22] 2026-03-08 00:38:26,962 | INFO     | [job] control thread has finished
[2026-03-08 01:39:22] 2026-03-08 00:38:27,207 | INFO     | [job] validate thread has finished
[2026-03-08 01:39:22] 2026-03-08 00:38:27,379 | INFO     | [payload] validate_pre thread has finished
[2026-03-08 01:39:22] 2026-03-08 00:38:27,461 | INFO     | [payload] control thread has finished
[2026-03-08 01:39:22] 2026-03-08 00:38:27,549 | INFO     | [payload] execute_payloads thread has finished
[2026-03-08 01:39:22] 2026-03-08 00:38:27,581 | INFO     | [job] create_data_payload thread has finished
[2026-03-08 01:39:22] 2026-03-08 00:38:27,583 | INFO     | [data] copytool_in thread has finished
[2026-03-08 01:39:22] 2026-03-08 00:38:27,682 | INFO     | job.realtimelogging is not enabled
[2026-03-08 01:39:22] 2026-03-08 00:38:27,765 | INFO     | [data] copytool_out thread has finished
[2026-03-08 01:39:22] 2026-03-08 00:38:27,859 | INFO     | [data] control thread has finished
[2026-03-08 01:39:22] 2026-03-08 00:38:27,882 | INFO     | [payload] validate_post thread has finished
[2026-03-08 01:39:22] 2026-03-08 00:38:28,134 | INFO     | [payload] failed_post thread has finished
[2026-03-08 01:39:22] 2026-03-08 00:38:28,466 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-08 01:39:22] 2026-03-08 00:38:28,684 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-08 01:39:22] 2026-03-08 00:38:29,471 | INFO     | [job] queue monitor thread has finished
[2026-03-08 01:39:22] 2026-03-08 00:38:29,765 | INFO     | [data] queue_monitor thread has finished
[2026-03-08 01:39:22] 2026-03-08 00:38:55,621 | INFO     | PID=1343156 has CPU usage=6.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-03-08 01:39:22] 2026-03-08 00:38:55,621 | INFO     | .. there are 48 such processes running
[2026-03-08 01:39:22] 2026-03-08 00:38:55,621 | INFO     | found 0 job(s) in 20 queues
[2026-03-08 01:39:22] 2026-03-08 00:38:55,622 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-08 01:39:22] 2026-03-08 00:38:55,622 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-08 01:39:22] 2026-03-08 00:39:15,963 | INFO     | [monitor] cgroup control has ended
[2026-03-08 01:39:22] 2026-03-08 00:39:17,289 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 22962833852224)>', '<ExcThread(monitor, started 22962597283584)>']
[2026-03-08 01:39:22] 2026-03-08 00:39:17,732 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-08 01:39:22] 2026-03-08 00:39:17,733 | INFO     | [monitor] control thread has ended
[2026-03-08 01:39:22] 2026-03-08 00:39:22,314 | INFO     | all workflow threads have been joined
[2026-03-08 01:39:22] 2026-03-08 00:39:22,315 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-08 01:39:22] 2026-03-08 00:39:22,315 | INFO     | traces error code: 0
[2026-03-08 01:39:22] 2026-03-08 00:39:22,315 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-08 01:39:22] 2026-03-08 00:39:22,456 [wrapper] ==== pilot stdout END ====
[2026-03-08 01:39:22] 2026-03-08 00:39:22,458 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-08 01:39:22] 2026-03-08 00:39:22,462 [wrapper] pilotpid: 1343156
[2026-03-08 01:39:22] 2026-03-08 00:39:22,465 [wrapper] Pilot exit status: 0
[2026-03-08 01:39:22] 2026-03-08 00:39:22,476 [wrapper] pandaids: 7038812045
[2026-03-08 01:39:22] 2026-03-08 00:39:22,607 [wrapper] cleanup supervisor_pilot 1952311 1343157
[2026-03-08 01:39:22] 2026-03-08 00:39:22,610 [wrapper] Test setup, not cleaning
[2026-03-08 01:39:22] 2026-03-08 00:39:22,612 [wrapper] apfmon messages muted
[2026-03-08 01:39:22] 2026-03-08 00:39:22,614 [wrapper] ==== wrapper stdout END ====
[2026-03-08 01:39:22] 2026-03-08 00:39:22,616 [wrapper] ==== wrapper stderr END ====
[2026-03-08 01:39:22]  *** Error codes and diagnostics ***
[2026-03-08 01:39:22]     "exeErrorCode": 0,
[2026-03-08 01:39:22]     "exeErrorDiag": "",
[2026-03-08 01:39:22]     "pilotErrorCode": 0,
[2026-03-08 01:39:22]     "pilotErrorDiag": "",
[2026-03-08 01:39:22]  *** Listing of results directory ***
[2026-03-08 01:39:22] total 616996
[2026-03-08 01:39:22] -rw-r--r--. 1 boinc boinc    584627 Mar  5 23:39 pilot3.tar.gz
[2026-03-08 01:39:22] -rwx------. 1 boinc boinc     36322 Mar  5 23:39 runpilot2-wrapper.sh
[2026-03-08 01:39:22] -rw-r--r--. 1 boinc boinc      5111 Mar  5 23:39 queuedata.json
[2026-03-08 01:39:22] -rw-r--r--. 1 boinc boinc       100 Mar  8 00:18 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-08 01:39:22] -rwxr-xr-x. 1 boinc boinc      7986 Mar  8 00:18 run_atlas
[2026-03-08 01:39:22] -rw-r--r--. 1 boinc boinc       105 Mar  8 00:18 job.xml
[2026-03-08 01:39:22] -rw-r--r--. 2 boinc boinc 438925768 Mar  8 00:18 EVNT.46701403._000251.pool.root.1
[2026-03-08 01:39:22] -rw-r--r--. 2 boinc boinc     15845 Mar  8 00:18 start_atlas.sh
[2026-03-08 01:39:22] drwxrwx--x. 2 boinc boinc      4096 Mar  8 00:18 shared
[2026-03-08 01:39:22] -rw-r--r--. 2 boinc boinc    597955 Mar  8 00:18 input.tar.gz
[2026-03-08 01:39:22] -rw-r--r--. 1 boinc boinc      6705 Mar  8 00:18 init_data.xml
[2026-03-08 01:39:22] -rw-r--r--. 1 boinc boinc         0 Mar  8 00:18 boinc_lockfile
[2026-03-08 01:39:22] -rw-r--r--. 1 boinc boinc      2563 Mar  8 00:18 pandaJob.out
[2026-03-08 01:39:22] -rw-------. 1 boinc boinc    999177 Mar  8 00:19 agis_schedconf.cvmfs.json
[2026-03-08 01:39:22] -rw-------. 1 boinc boinc   1521291 Mar  8 00:19 agis_ddmendpoints.agis.ALL.json
[2026-03-08 01:39:22] -rw-------. 1 boinc boinc       444 Mar  8 00:19 workernode_map.json
[2026-03-08 01:39:22] drwx------. 5 boinc boinc      4096 Mar  8 00:19 pilot3
[2026-03-08 01:39:22] -rw-r--r--. 1 boinc boinc       530 Mar  8 01:37 boinc_task_state.xml
[2026-03-08 01:39:22] -rw-------. 1 boinc boinc 187051539 Mar  8 01:37 HITS.48955006._012505.pool.root.1
[2026-03-08 01:39:22] -rw-------. 1 boinc boinc      1040 Mar  8 01:38 memory_monitor_summary.json
[2026-03-08 01:39:22] -rw-------. 1 boinc boinc    256384 Mar  8 01:38 log.48955006._012505.job.log.tgz.1
[2026-03-08 01:39:22] -rw-------. 1 boinc boinc      6345 Mar  8 01:38 heartbeat.json
[2026-03-08 01:39:22] -rw-r--r--. 1 boinc boinc        27 Mar  8 01:38 wrapper_checkpoint.txt
[2026-03-08 01:39:22] -rw-r--r--. 1 boinc boinc      8192 Mar  8 01:38 boinc_mmap_file
[2026-03-08 01:39:22] -rw-------. 1 boinc boinc        95 Mar  8 01:38 pilot_heartbeat.json
[2026-03-08 01:39:22] -rw-------. 1 boinc boinc      5087 Mar  8 01:39 pilotlog.txt
[2026-03-08 01:39:22] -rw-------. 1 boinc boinc    697798 Mar  8 01:39 log.48955006._012505.job.log.1
[2026-03-08 01:39:22] -rw-------. 1 boinc boinc       357 Mar  8 01:39 output.list
[2026-03-08 01:39:22] -rw-r--r--. 1 boinc boinc       620 Mar  8 01:39 runtime_log
[2026-03-08 01:39:22] -rw-------. 1 boinc boinc    972800 Mar  8 01:39 result.tar.gz
[2026-03-08 01:39:22] -rw-r--r--. 1 boinc boinc      9204 Mar  8 01:39 runtime_log.err
[2026-03-08 01:39:22] -rw-------. 1 boinc boinc       661 Mar  8 01:39 h5NKDmrWWI9nsSi4ap6QjLDmwznN0nGgGQJmIVkRDm9GPLDmEbFian.diag
[2026-03-08 01:39:22] -rw-r--r--. 1 boinc boinc      1932 Mar  8 01:39 stderr.txt
[2026-03-08 01:39:22] HITS file was successfully produced:
[2026-03-08 01:39:22] -rw-------. 1 boinc boinc 187051539 Mar  8 01:37 shared/HITS.pool.root.1
[2026-03-08 01:39:22]  *** Contents of shared directory: ***
[2026-03-08 01:39:22] total 612868
[2026-03-08 01:39:22] -rw-r--r--. 2 boinc boinc 438925768 Mar  8 00:18 ATLAS.root_0
[2026-03-08 01:39:22] -rw-r--r--. 2 boinc boinc     15845 Mar  8 00:18 start_atlas.sh
[2026-03-08 01:39:22] -rw-r--r--. 2 boinc boinc    597955 Mar  8 00:18 input.tar.gz
[2026-03-08 01:39:22] -rw-------. 1 boinc boinc 187051539 Mar  8 01:37 HITS.pool.root.1
[2026-03-08 01:39:22] -rw-------. 1 boinc boinc    972800 Mar  8 01:39 result.tar.gz
01:39:24 (1338486): run_atlas exited; CPU time 18230.537212
01:39:24 (1338486): called boinc_finish(0)

</stderr_txt>
]]>

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