Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
07:12:52 (1726065): wrapper (7.7.26015): starting
07:12:52 (1726065): wrapper: running run_atlas (--nthreads 4)
[2026-03-08 07:12:52] Arguments: --nthreads 4
[2026-03-08 07:12:52] Threads: 4
[2026-03-08 07:12:52] Checking for CVMFS
[2026-03-08 07:12:52] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-08 07:12:53] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-08 07:12:53] Running cvmfs_config stat atlas.cern.ch
[2026-03-08 07:12:53] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-08 07:12:53] 2.9.2.0 4257 15296 100488 157029 1 50 35823002 36864000 0 130560 0 7042371 99.984 570830 12264 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-03-08 07:12:53] CVMFS is ok
[2026-03-08 07:12:53] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-08 07:12:53] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-08 07:12:53] Further information can be found at the LHC@home message board.
[2026-03-08 07:12:53] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-08 07:12:53] Checking for apptainer binary...
[2026-03-08 07:12:53] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-08 07:12:53] Running /usr/bin/apptainer --version
[2026-03-08 07:12:53] apptainer version 1.4.1-1.1
[2026-03-08 07:12:53] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-08 07:12:53] atlasA237
[2026-03-08 07:12:53] apptainer works
[2026-03-08 07:12:53] Set ATHENA_PROC_NUMBER=4
[2026-03-08 07:12:53] Set ATHENA_CORE_NUMBER=4
[2026-03-08 07:12:53] Starting ATLAS job with PandaID=7032958939
[2026-03-08 07:12:53] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-08 11:34:54]  *** The last 200 lines of the pilot log: ***
[2026-03-08 11:34:55] 2026-03-08 10:34:23,409 | INFO     | collected zombie processes
[2026-03-08 11:34:55] 2026-03-08 10:34:23,409 | INFO     | will attempt to kill all subprocesses of pid=1734765
[2026-03-08 11:34:55] 2026-03-08 10:34:23,477 | INFO     | process IDs to be killed: [1734765] (in reverse order)
[2026-03-08 11:34:55] 2026-03-08 10:34:23,519 | WARNING  | found no corresponding commands to process id(s)
[2026-03-08 11:34:55] 2026-03-08 10:34:23,519 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-08 11:34:55] 2026-03-08 10:34:23,522 | INFO     | did not find any defunct processes belonging to 1734765
[2026-03-08 11:34:55] 2026-03-08 10:34:23,525 | INFO     | did not find any defunct processes belonging to 1734765
[2026-03-08 11:34:55] 2026-03-08 10:34:23,525 | INFO     | ready for new job
[2026-03-08 11:34:55] 2026-03-08 10:34:23,525 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-08 11:34:55] 2026-03-08 10:34:23,526 | INFO     | **************************************
[2026-03-08 11:34:55] 2026-03-08 10:34:23,526 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-03-08 11:34:55] 2026-03-08 10:34:23,526 | INFO     | **************************************
[2026-03-08 11:34:55] 2026-03-08 10:34:23,526 | INFO     | 
[2026-03-08 11:34:55] 2026-03-08 10:34:23,526 | INFO     | architecture information:
[2026-03-08 11:34:55] 2026-03-08 10:34:23,527 | INFO     | executing command: cat /etc/os-release
[2026-03-08 11:34:55] 2026-03-08 10:34:23,540 | INFO     | cat /etc/os-release:
[2026-03-08 11:34:55] NAME="CentOS Linux"
[2026-03-08 11:34:55] VERSION="7 (Core)"
[2026-03-08 11:34:55] ID="centos"
[2026-03-08 11:34:55] ID_LIKE="rhel fedora"
[2026-03-08 11:34:55] VERSION_ID="7"
[2026-03-08 11:34:55] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-08 11:34:55] ANSI_COLOR="0;31"
[2026-03-08 11:34:55] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-08 11:34:55] HOME_URL="https://www.centos.org/"
[2026-03-08 11:34:55] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-08 11:34:55] 
[2026-03-08 11:34:55] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-08 11:34:55] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-08 11:34:55] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-08 11:34:55] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-08 11:34:55] 
[2026-03-08 11:34:55] 2026-03-08 10:34:23,541 | INFO     | **************************************
[2026-03-08 11:34:55] 2026-03-08 10:34:24,043 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-03-08 11:34:55] 2026-03-08 10:34:24,059 | INFO     | sufficient remaining disk space (321396932608 B)
[2026-03-08 11:34:55] 2026-03-08 10:34:24,059 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-08 11:34:55] 2026-03-08 10:34:24,059 | INFO     | current server update state: UPDATING_FINAL
[2026-03-08 11:34:55] 2026-03-08 10:34:24,059 | INFO     | update_server=False
[2026-03-08 11:34:55] 2026-03-08 10:34:24,060 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-08 11:34:55] 2026-03-08 10:34:24,060 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-08 11:34:55] 2026-03-08 10:34:24,060 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-08 11:34:55] 2026-03-08 10:34:24,060 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-08 11:34:55] 2026-03-08 10:34:24,060 | INFO     | will abort loop
[2026-03-08 11:34:55] 2026-03-08 10:34:24,209 | INFO     | all job control threads have been joined
[2026-03-08 11:34:55] 2026-03-08 10:34:24,731 | INFO     | all data control threads have been joined
[2026-03-08 11:34:55] 2026-03-08 10:34:24,946 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-08 11:34:55] 2026-03-08 10:34:25,065 | INFO     | [job] retrieve thread has finished
[2026-03-08 11:34:55] 2026-03-08 10:34:25,065 | INFO     | [job] queue monitor thread has finished
[2026-03-08 11:34:55] 2026-03-08 10:34:25,066 | INFO     | [job] job monitor thread has finished
[2026-03-08 11:34:55] 2026-03-08 10:34:25,168 | INFO     | [job] create_data_payload thread has finished
[2026-03-08 11:34:55] 2026-03-08 10:34:25,207 | INFO     | [data] copytool_in thread has finished
[2026-03-08 11:34:55] 2026-03-08 10:34:25,214 | INFO     | [job] control thread has finished
[2026-03-08 11:34:55] 2026-03-08 10:34:25,236 | INFO     | [payload] validate_pre thread has finished
[2026-03-08 11:34:55] 2026-03-08 10:34:25,301 | INFO     | [payload] validate_post thread has finished
[2026-03-08 11:34:55] 2026-03-08 10:34:25,507 | INFO     | all payload control threads have been joined
[2026-03-08 11:34:55] 2026-03-08 10:34:25,737 | INFO     | [data] control thread has finished
[2026-03-08 11:34:55] 2026-03-08 10:34:26,157 | INFO     | [payload] execute_payloads thread has finished
[2026-03-08 11:34:55] 2026-03-08 10:34:26,513 | INFO     | [payload] control thread has finished
[2026-03-08 11:34:55] 2026-03-08 10:34:26,536 | INFO     | [job] validate thread has finished
[2026-03-08 11:34:55] 2026-03-08 10:34:26,640 | INFO     | [payload] failed_post thread has finished
[2026-03-08 11:34:55] 2026-03-08 10:34:26,831 | INFO     | [monitor] cgroup control has ended
[2026-03-08 11:34:55] 2026-03-08 10:34:26,952 | INFO     | [data] copytool_out thread has finished
[2026-03-08 11:34:55] 2026-03-08 10:34:28,066 | INFO     | [data] queue_monitor thread has finished
[2026-03-08 11:34:55] 2026-03-08 10:34:34,115 | INFO     | job.realtimelogging is not enabled
[2026-03-08 11:34:55] 2026-03-08 10:34:35,121 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-08 11:34:55] 2026-03-08 10:34:36,652 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139991235159872)>', '<ExcThread(monitor, started 139990751237888)>']
[2026-03-08 11:34:55] 2026-03-08 10:34:41,666 | INFO     | all workflow threads have been joined
[2026-03-08 11:34:55] 2026-03-08 10:34:41,666 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-08 11:34:55] 2026-03-08 10:34:41,666 | INFO     | traces error code: 0
[2026-03-08 11:34:55] 2026-03-08 10:34:41,666 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-08 11:34:55] 2026-03-08 10:34:54,823 | INFO     | PID=1730229 has CPU usage=2.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-03-08 11:34:55] 2026-03-08 10:34:54,823 | INFO     | found 0 job(s) in 20 queues
[2026-03-08 11:34:55] 2026-03-08 10:34:54,823 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-08 11:34:55] 2026-03-08 10:34:54,823 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-08 11:34:55] 2026-03-08 10:34:54,823 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-08 11:34:55] 2026-03-08 10:34:54,823 | INFO     | [monitor] control thread has ended
[2026-03-08 11:34:55] 2026-03-08 10:34:54,892 [wrapper] ==== pilot stdout END ====
[2026-03-08 11:34:55] 2026-03-08 10:34:54,896 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-08 11:34:55] 2026-03-08 10:34:54,899 [wrapper] pilotpid: 1730229
[2026-03-08 11:34:55] 2026-03-08 10:34:54,903 [wrapper] Pilot exit status: 0
[2026-03-08 11:34:55] 2026-03-08 10:34:54,913 [wrapper] pandaids: 7032958939
[2026-03-08 11:34:55] 2026-03-08 10:34:54,939 [wrapper] cleanup supervisor_pilot 1772160 1730230
[2026-03-08 11:34:55] 2026-03-08 10:34:54,943 [wrapper] Test setup, not cleaning
[2026-03-08 11:34:55] 2026-03-08 10:34:54,946 [wrapper] apfmon messages muted
[2026-03-08 11:34:55] 2026-03-08 10:34:54,950 [wrapper] ==== wrapper stdout END ====
[2026-03-08 11:34:55] 2026-03-08 10:34:54,953 [wrapper] ==== wrapper stderr END ====
[2026-03-08 11:34:55]  *** Error codes and diagnostics ***
[2026-03-08 11:34:55]     "exeErrorCode": 0,
[2026-03-08 11:34:55]     "exeErrorDiag": "",
[2026-03-08 11:34:55]     "pilotErrorCode": 0,
[2026-03-08 11:34:55]     "pilotErrorDiag": "",
[2026-03-08 11:34:55]  *** Listing of results directory ***
[2026-03-08 11:34:55] total 648436
[2026-03-08 11:34:55] -rw-r--r-- 1 boinc boinc    584627 Feb 28 11:26 pilot3.tar.gz
[2026-03-08 11:34:55] -rwx------ 1 boinc boinc     36322 Feb 28 11:26 runpilot2-wrapper.sh
[2026-03-08 11:34:55] -rw-r--r-- 1 boinc boinc      5111 Feb 28 11:26 queuedata.json
[2026-03-08 11:34:55] -rw-r--r-- 1 boinc boinc       100 Mar  8 07:12 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-08 11:34:55] -rwxr-xr-x 1 boinc boinc      7986 Mar  8 07:12 run_atlas
[2026-03-08 11:34:55] -rw-r--r-- 1 boinc boinc       105 Mar  8 07:12 job.xml
[2026-03-08 11:34:55] -rw-r--r-- 2 boinc boinc 289589759 Mar  8 07:12 EVNT.48448593._000003.pool.root.1
[2026-03-08 11:34:55] -rw-r--r-- 2 boinc boinc    597950 Mar  8 07:12 input.tar.gz
[2026-03-08 11:34:55] -rw-r--r-- 2 boinc boinc     15845 Mar  8 07:12 start_atlas.sh
[2026-03-08 11:34:55] drwxrwx--x 2 boinc boinc      4096 Mar  8 07:12 shared
[2026-03-08 11:34:55] -rw-r--r-- 1 boinc boinc         0 Mar  8 07:12 boinc_setup_complete
[2026-03-08 11:34:55] -rw-r--r-- 1 boinc boinc      6371 Mar  8 07:12 init_data.xml
[2026-03-08 11:34:55] -rw-r--r-- 1 boinc boinc         0 Mar  8 07:12 boinc_lockfile
[2026-03-08 11:34:55] -rw-r--r-- 1 boinc boinc      2596 Mar  8 07:12 pandaJob.out
[2026-03-08 11:34:55] -rw------- 1 boinc boinc    999169 Mar  8 07:13 agis_schedconf.cvmfs.json
[2026-03-08 11:34:55] -rw------- 1 boinc boinc       423 Mar  8 07:13 workernode_map.json
[2026-03-08 11:34:55] drwx------ 5 boinc boinc      4096 Mar  8 07:13 pilot3
[2026-03-08 11:34:55] -rw------- 1 boinc boinc 365278478 Mar  8 11:33 HITS.48842556._000052.pool.root.1
[2026-03-08 11:34:55] -rw-r--r-- 1 boinc boinc       530 Mar  8 11:33 boinc_task_state.xml
[2026-03-08 11:34:55] -rw------- 1 boinc boinc      1024 Mar  8 11:34 memory_monitor_summary.json
[2026-03-08 11:34:55] -rw------- 1 boinc boinc   1521291 Mar  8 11:34 agis_ddmendpoints.agis.ALL.json
[2026-03-08 11:34:55] -rw------- 1 boinc boinc    409338 Mar  8 11:34 log.48842556._000052.job.log.tgz.1
[2026-03-08 11:34:55] -rw------- 1 boinc boinc      6306 Mar  8 11:34 heartbeat.json
[2026-03-08 11:34:55] -rw-r--r-- 1 boinc boinc      8192 Mar  8 11:34 boinc_mmap_file
[2026-03-08 11:34:55] -rw-r--r-- 1 boinc boinc        28 Mar  8 11:34 wrapper_checkpoint.txt
[2026-03-08 11:34:55] -rw------- 1 boinc boinc       747 Mar  8 11:34 pilotlog.txt
[2026-03-08 11:34:55] -rw------- 1 boinc boinc        95 Mar  8 11:34 pilot_heartbeat.json
[2026-03-08 11:34:55] -rw------- 1 boinc boinc   2195900 Mar  8 11:34 log.48842556._000052.job.log.1
[2026-03-08 11:34:55] -rw------- 1 boinc boinc       357 Mar  8 11:34 output.list
[2026-03-08 11:34:55] -rw-r--r-- 1 boinc boinc       620 Mar  8 11:34 runtime_log
[2026-03-08 11:34:55] -rw------- 1 boinc boinc   2621440 Mar  8 11:34 result.tar.gz
[2026-03-08 11:34:55] -rw-r--r-- 1 boinc boinc      8912 Mar  8 11:34 runtime_log.err
[2026-03-08 11:34:55] -rw------- 1 boinc boinc       664 Mar  8 11:34 WprKDmMiWG9n9Rq4apOajLDm4fhM0noT9bVooX4SDm364KDm2NqRNm.diag
[2026-03-08 11:34:55] -rw-r--r-- 1 boinc boinc     10377 Mar  8 11:34 stderr.txt
[2026-03-08 11:34:55] HITS file was successfully produced:
[2026-03-08 11:34:55] -rw------- 1 boinc boinc 365278478 Mar  8 11:33 shared/HITS.pool.root.1
[2026-03-08 11:34:55]  *** Contents of shared directory: ***
[2026-03-08 11:34:55] total 642692
[2026-03-08 11:34:55] -rw-r--r-- 2 boinc boinc 289589759 Mar  8 07:12 ATLAS.root_0
[2026-03-08 11:34:55] -rw-r--r-- 2 boinc boinc    597950 Mar  8 07:12 input.tar.gz
[2026-03-08 11:34:55] -rw-r--r-- 2 boinc boinc     15845 Mar  8 07:12 start_atlas.sh
[2026-03-08 11:34:55] -rw------- 1 boinc boinc 365278478 Mar  8 11:33 HITS.pool.root.1
[2026-03-08 11:34:55] -rw------- 1 boinc boinc   2621440 Mar  8 11:34 result.tar.gz
11:34:56 (1726065): run_atlas exited; CPU time 61335.010025
11:34:56 (1726065): called boinc_finish(0)

</stderr_txt>
]]>

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