Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
02:35:31 (2448227): wrapper (7.7.26015): starting
02:35:31 (2448227): wrapper: running run_atlas (--nthreads 3)
[2026-03-09 02:35:31] Arguments: --nthreads 3
[2026-03-09 02:35:31] Threads: 3
[2026-03-09 02:35:31] Checking for CVMFS
[2026-03-09 02:35:31] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-09 02:35:32] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-09 02:35:32] Running cvmfs_config stat atlas.cern.ch
[2026-03-09 02:35:32] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-09 02:35:32] 2.9.2.0 77542 16470 88672 157060 3 49 24471916 36864000 0 130560 0 6247152 99.981 629062 12396 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-03-09 02:35:32] CVMFS is ok
[2026-03-09 02:35:32] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-09 02:35:32] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-09 02:35:32] Further information can be found at the LHC@home message board.
[2026-03-09 02:35:32] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-09 02:35:32] Checking for apptainer binary...
[2026-03-09 02:35:32] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-09 02:35:32] Running /usr/bin/apptainer --version
[2026-03-09 02:35:32] apptainer version 1.4.1-1.1
[2026-03-09 02:35:32] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-09 02:35:32] thA312
[2026-03-09 02:35:32] apptainer works
[2026-03-09 02:35:32] Set ATHENA_PROC_NUMBER=3
[2026-03-09 02:35:32] Set ATHENA_CORE_NUMBER=3
[2026-03-09 02:35:32] Starting ATLAS job with PandaID=7032974111
[2026-03-09 02:35:32] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-09 03:41:52]  *** The last 200 lines of the pilot log: ***
[2026-03-09 03:41:52] 2026-03-09 02:41:21,186 | INFO     | queue jobs had 0 job(s) [purged]
[2026-03-09 03:41:52] 2026-03-09 02:41:21,186 | INFO     | queue payloads had 0 job(s) [purged]
[2026-03-09 03:41:52] 2026-03-09 02:41:21,186 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-09 03:41:52] 2026-03-09 02:41:21,187 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-09 03:41:52] 2026-03-09 02:41:21,187 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-09 03:41:52] 2026-03-09 02:41:21,187 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-09 03:41:52] 2026-03-09 02:41:21,187 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-09 03:41:52] 2026-03-09 02:41:21,187 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-09 03:41:52] 2026-03-09 02:41:21,187 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-09 03:41:52] 2026-03-09 02:41:21,187 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-09 03:41:52] 2026-03-09 02:41:21,187 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-09 03:41:52] 2026-03-09 02:41:21,187 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-09 03:41:52] 2026-03-09 02:41:21,187 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-09 03:41:52] 2026-03-09 02:41:21,187 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-09 03:41:52] 2026-03-09 02:41:21,187 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-09 03:41:52] 2026-03-09 02:41:21,187 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-09 03:41:52] 2026-03-09 02:41:21,187 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-09 03:41:52] 2026-03-09 02:41:21,187 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-09 03:41:52] 2026-03-09 02:41:21,187 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-09 03:41:52] 2026-03-09 02:41:21,187 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-09 03:41:52] 2026-03-09 02:41:21,187 | INFO     | job 7032974111 has completed (purged errors)
[2026-03-09 03:41:52] 2026-03-09 02:41:21,187 | INFO     | overall cleanup function is called
[2026-03-09 03:41:52] 2026-03-09 02:41:22,193 | INFO     | --- collectZombieJob: --- 10, [2456699]
[2026-03-09 03:41:52] 2026-03-09 02:41:22,194 | INFO     | zombie collector waiting for pid 2456699
[2026-03-09 03:41:52] 2026-03-09 02:41:22,194 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-09 03:41:52] 2026-03-09 02:41:22,194 | INFO     | collected zombie processes
[2026-03-09 03:41:52] 2026-03-09 02:41:22,194 | INFO     | will attempt to kill all subprocesses of pid=2456699
[2026-03-09 03:41:52] 2026-03-09 02:41:22,243 | INFO     | process IDs to be killed: [2456699] (in reverse order)
[2026-03-09 03:41:52] 2026-03-09 02:41:22,269 | WARNING  | found no corresponding commands to process id(s)
[2026-03-09 03:41:52] 2026-03-09 02:41:22,269 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-09 03:41:52] 2026-03-09 02:41:22,271 | INFO     | did not find any defunct processes belonging to 2456699
[2026-03-09 03:41:52] 2026-03-09 02:41:22,272 | INFO     | did not find any defunct processes belonging to 2456699
[2026-03-09 03:41:52] 2026-03-09 02:41:22,272 | INFO     | ready for new job
[2026-03-09 03:41:52] 2026-03-09 02:41:22,272 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-09 03:41:52] 2026-03-09 02:41:22,273 | INFO     | **************************************
[2026-03-09 03:41:52] 2026-03-09 02:41:22,273 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-03-09 03:41:52] 2026-03-09 02:41:22,273 | INFO     | **************************************
[2026-03-09 03:41:52] 2026-03-09 02:41:22,273 | INFO     | 
[2026-03-09 03:41:52] 2026-03-09 02:41:22,273 | INFO     | architecture information:
[2026-03-09 03:41:52] 2026-03-09 02:41:22,273 | INFO     | executing command: cat /etc/os-release
[2026-03-09 03:41:52] 2026-03-09 02:41:22,282 | INFO     | cat /etc/os-release:
[2026-03-09 03:41:52] NAME="CentOS Linux"
[2026-03-09 03:41:52] VERSION="7 (Core)"
[2026-03-09 03:41:52] ID="centos"
[2026-03-09 03:41:52] ID_LIKE="rhel fedora"
[2026-03-09 03:41:52] VERSION_ID="7"
[2026-03-09 03:41:52] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-09 03:41:52] ANSI_COLOR="0;31"
[2026-03-09 03:41:52] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-09 03:41:52] HOME_URL="https://www.centos.org/"
[2026-03-09 03:41:52] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-09 03:41:52] 
[2026-03-09 03:41:52] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-09 03:41:52] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-09 03:41:52] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-09 03:41:52] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-09 03:41:52] 
[2026-03-09 03:41:52] 2026-03-09 02:41:22,282 | INFO     | **************************************
[2026-03-09 03:41:52] 2026-03-09 02:41:22,785 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-03-09 03:41:52] 2026-03-09 02:41:22,798 | INFO     | sufficient remaining disk space (331493670912 B)
[2026-03-09 03:41:52] 2026-03-09 02:41:22,799 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-09 03:41:52] 2026-03-09 02:41:22,799 | INFO     | current server update state: UPDATING_FINAL
[2026-03-09 03:41:52] 2026-03-09 02:41:22,799 | INFO     | update_server=False
[2026-03-09 03:41:52] 2026-03-09 02:41:22,799 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-09 03:41:52] 2026-03-09 02:41:22,799 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-09 03:41:52] 2026-03-09 02:41:22,799 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-09 03:41:52] 2026-03-09 02:41:22,799 | INFO     | aborting loop
[2026-03-09 03:41:52] 2026-03-09 02:41:22,991 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-09 03:41:52] 2026-03-09 02:41:23,053 | INFO     | all data control threads have been joined
[2026-03-09 03:41:52] 2026-03-09 02:41:23,385 | INFO     | all payload control threads have been joined
[2026-03-09 03:41:52] 2026-03-09 02:41:23,799 | INFO     | [job] retrieve thread has finished
[2026-03-09 03:41:52] 2026-03-09 02:41:23,804 | INFO     | [job] queue monitor thread has finished
[2026-03-09 03:41:52] 2026-03-09 02:41:23,805 | INFO     | [job] job monitor thread has finished
[2026-03-09 03:41:52] 2026-03-09 02:41:24,058 | INFO     | [data] control thread has finished
[2026-03-09 03:41:52] 2026-03-09 02:41:24,202 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-09 03:41:52] 2026-03-09 02:41:24,272 | INFO     | all job control threads have been joined
[2026-03-09 03:41:52] 2026-03-09 02:41:24,375 | INFO     | [job] validate thread has finished
[2026-03-09 03:41:52] 2026-03-09 02:41:24,390 | INFO     | [payload] control thread has finished
[2026-03-09 03:41:52] 2026-03-09 02:41:24,438 | INFO     | [job] create_data_payload thread has finished
[2026-03-09 03:41:52] 2026-03-09 02:41:24,492 | INFO     | [payload] failed_post thread has finished
[2026-03-09 03:41:52] 2026-03-09 02:41:24,493 | INFO     | [payload] validate_pre thread has finished
[2026-03-09 03:41:52] 2026-03-09 02:41:24,585 | INFO     | [data] copytool_in thread has finished
[2026-03-09 03:41:52] 2026-03-09 02:41:24,773 | INFO     | [payload] execute_payloads thread has finished
[2026-03-09 03:41:52] 2026-03-09 02:41:24,997 | INFO     | [data] copytool_out thread has finished
[2026-03-09 03:41:52] 2026-03-09 02:41:25,278 | INFO     | [job] control thread has finished
[2026-03-09 03:41:52] 2026-03-09 02:41:25,302 | INFO     | [payload] validate_post thread has finished
[2026-03-09 03:41:52] 2026-03-09 02:41:25,568 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-09 03:41:52] 2026-03-09 02:41:29,575 | INFO     | [data] queue_monitor thread has finished
[2026-03-09 03:41:52] 2026-03-09 02:41:46,095 | INFO     | [monitor] cgroup control has ended
[2026-03-09 03:41:52] 2026-03-09 02:41:46,384 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140460451391296)>', '<ExcThread(monitor, started 140460077061888)>']
[2026-03-09 03:41:52] 2026-03-09 02:41:51,409 | INFO     | all workflow threads have been joined
[2026-03-09 03:41:52] 2026-03-09 02:41:51,410 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-09 03:41:52] 2026-03-09 02:41:51,411 | INFO     | traces error code: 0
[2026-03-09 03:41:52] 2026-03-09 02:41:51,411 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-09 03:41:52] 2026-03-09 02:41:52,797 | INFO     | PID=2452275 has CPU usage=0.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-03-09 03:41:52] 2026-03-09 02:41:52,798 | INFO     | found 0 job(s) in 20 queues
[2026-03-09 03:41:52] 2026-03-09 02:41:52,798 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-09 03:41:52] 2026-03-09 02:41:52,798 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-09 03:41:52] 2026-03-09 02:41:52,798 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-09 03:41:52] 2026-03-09 02:41:52,798 | INFO     | [monitor] control thread has ended
[2026-03-09 03:41:52] 2026-03-09 02:41:52,844 [wrapper] ==== pilot stdout END ====
[2026-03-09 03:41:52] 2026-03-09 02:41:52,846 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-09 03:41:52] 2026-03-09 02:41:52,848 [wrapper] pilotpid: 2452275
[2026-03-09 03:41:52] 2026-03-09 02:41:52,850 [wrapper] Pilot exit status: 0
[2026-03-09 03:41:52] 2026-03-09 02:41:52,857 [wrapper] pandaids: 7032974111
[2026-03-09 03:41:52] 2026-03-09 02:41:52,874 [wrapper] cleanup supervisor_pilot 2462794 2452276
[2026-03-09 03:41:52] 2026-03-09 02:41:52,876 [wrapper] Test setup, not cleaning
[2026-03-09 03:41:52] 2026-03-09 02:41:52,879 [wrapper] apfmon messages muted
[2026-03-09 03:41:52] 2026-03-09 02:41:52,881 [wrapper] ==== wrapper stdout END ====
[2026-03-09 03:41:52] 2026-03-09 02:41:52,883 [wrapper] ==== wrapper stderr END ====
[2026-03-09 03:41:52]  *** Error codes and diagnostics ***
[2026-03-09 03:41:52]     "exeErrorCode": 0,
[2026-03-09 03:41:52]     "exeErrorDiag": "",
[2026-03-09 03:41:52]     "pilotErrorCode": 0,
[2026-03-09 03:41:52]     "pilotErrorDiag": "",
[2026-03-09 03:41:52]  *** Listing of results directory ***
[2026-03-09 03:41:52] total 338656
[2026-03-09 03:41:52] -rw-r--r-- 1 boinc boinc      5111 Feb 28 11:26 queuedata.json
[2026-03-09 03:41:52] -rw-r--r-- 1 boinc boinc    584627 Feb 28 11:26 pilot3.tar.gz
[2026-03-09 03:41:52] -rwx------ 1 boinc boinc     36322 Feb 28 11:26 runpilot2-wrapper.sh
[2026-03-09 03:41:52] -rw-r--r-- 1 boinc boinc       100 Mar  9 02:35 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-09 03:41:52] -rwxr-xr-x 1 boinc boinc      7986 Mar  9 02:35 run_atlas
[2026-03-09 03:41:52] -rw-r--r-- 1 boinc boinc       105 Mar  9 02:35 job.xml
[2026-03-09 03:41:52] -rw-r--r-- 2 boinc boinc 191153114 Mar  9 02:35 EVNT.48700936._000006.pool.root.1
[2026-03-09 03:41:52] -rw-r--r-- 2 boinc boinc    597931 Mar  9 02:35 input.tar.gz
[2026-03-09 03:41:52] -rw-r--r-- 2 boinc boinc     15845 Mar  9 02:35 start_atlas.sh
[2026-03-09 03:41:52] drwxrwx--x 2 boinc boinc      4096 Mar  9 02:35 shared
[2026-03-09 03:41:52] -rw-r--r-- 1 boinc boinc         0 Mar  9 02:35 boinc_setup_complete
[2026-03-09 03:41:52] -rw-r--r-- 1 boinc boinc      6439 Mar  9 02:35 init_data.xml
[2026-03-09 03:41:52] -rw-r--r-- 1 boinc boinc         0 Mar  9 02:35 boinc_lockfile
[2026-03-09 03:41:52] -rw-r--r-- 1 boinc boinc      2497 Mar  9 02:35 pandaJob.out
[2026-03-09 03:41:52] -rw------- 1 boinc boinc    999108 Mar  9 02:35 agis_schedconf.cvmfs.json
[2026-03-09 03:41:52] -rw------- 1 boinc boinc   1511578 Mar  9 02:35 agis_ddmendpoints.agis.ALL.json
[2026-03-09 03:41:52] -rw------- 1 boinc boinc       426 Mar  9 02:35 workernode_map.json
[2026-03-09 03:41:52] drwx------ 5 boinc boinc      4096 Mar  9 02:35 pilot3
[2026-03-09 03:41:52] -rw-r--r-- 1 boinc boinc       529 Mar  9 03:40 boinc_task_state.xml
[2026-03-09 03:41:52] -rw------- 1 boinc boinc 150068274 Mar  9 03:41 HITS.48700938._000136.pool.root.1
[2026-03-09 03:41:52] -rw------- 1 boinc boinc        95 Mar  9 03:41 pilot_heartbeat.json
[2026-03-09 03:41:52] -rw------- 1 boinc boinc      1021 Mar  9 03:41 memory_monitor_summary.json
[2026-03-09 03:41:52] -rw------- 1 boinc boinc    236301 Mar  9 03:41 log.48700938._000136.job.log.tgz.1
[2026-03-09 03:41:52] -rw------- 1 boinc boinc      6309 Mar  9 03:41 heartbeat.json
[2026-03-09 03:41:52] -rw-r--r-- 1 boinc boinc        27 Mar  9 03:41 wrapper_checkpoint.txt
[2026-03-09 03:41:52] -rw-r--r-- 1 boinc boinc      8192 Mar  9 03:41 boinc_mmap_file
[2026-03-09 03:41:52] -rw------- 1 boinc boinc       747 Mar  9 03:41 pilotlog.txt
[2026-03-09 03:41:52] -rw------- 1 boinc boinc    588083 Mar  9 03:41 log.48700938._000136.job.log.1
[2026-03-09 03:41:52] -rw------- 1 boinc boinc       357 Mar  9 03:41 output.list
[2026-03-09 03:41:52] -rw-r--r-- 1 boinc boinc       620 Mar  9 03:41 runtime_log
[2026-03-09 03:41:52] -rw------- 1 boinc boinc    839680 Mar  9 03:41 result.tar.gz
[2026-03-09 03:41:52] -rw-r--r-- 1 boinc boinc      8896 Mar  9 03:41 runtime_log.err
[2026-03-09 03:41:52] -rw------- 1 boinc boinc       657 Mar  9 03:41 6m3MDmEiWG9nsSi4ap6QjLDmwznN0nGgGQJmIVkRDmso6KDmdBI3zn.diag
[2026-03-09 03:41:52] -rw-r--r-- 1 boinc boinc     12827 Mar  9 03:41 stderr.txt
[2026-03-09 03:41:52] HITS file was successfully produced:
[2026-03-09 03:41:52] -rw------- 1 boinc boinc 150068274 Mar  9 03:41 shared/HITS.pool.root.1
[2026-03-09 03:41:52]  *** Contents of shared directory: ***
[2026-03-09 03:41:52] total 334656
[2026-03-09 03:41:52] -rw-r--r-- 2 boinc boinc 191153114 Mar  9 02:35 ATLAS.root_0
[2026-03-09 03:41:52] -rw-r--r-- 2 boinc boinc    597931 Mar  9 02:35 input.tar.gz
[2026-03-09 03:41:52] -rw-r--r-- 2 boinc boinc     15845 Mar  9 02:35 start_atlas.sh
[2026-03-09 03:41:52] -rw------- 1 boinc boinc 150068274 Mar  9 03:41 HITS.pool.root.1
[2026-03-09 03:41:52] -rw------- 1 boinc boinc    839680 Mar  9 03:41 result.tar.gz
03:41:54 (2448227): run_atlas exited; CPU time 11055.515351
03:41:54 (2448227): called boinc_finish(0)

</stderr_txt>
]]>

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