Stderr output

<core_client_version>7.24.1</core_client_version>
<![CDATA[
<stderr_txt>
21:22:00 (431616): wrapper (7.7.26015): starting
21:22:00 (431616): wrapper: running run_atlas (--nthreads 12)
[2026-03-07 21:22:00] Arguments: --nthreads 12
[2026-03-07 21:22:00] Threads: 12
[2026-03-07 21:22:00] Checking for CVMFS
[2026-03-07 21:22:00] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-07 21:22:01] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-07 21:22:01] Running cvmfs_config stat atlas.cern.ch
[2026-03-07 21:22:01] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-07 21:22:01] 2.13.3.0 337834 137 47332 157014 3 49 2349371 4096000 0 130560 0 279428 99.999 5368 766 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch DIRECT 1
[2026-03-07 21:22:01] CVMFS is ok
[2026-03-07 21:22:01] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-07 21:22:01] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-07 21:22:01] Small home clusters do not require a local http proxy but it is suggested if
[2026-03-07 21:22:01] more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
[2026-03-07 21:22:01] Further information can be found at the LHC@home message board.
[2026-03-07 21:22:01] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-07 21:22:01] Checking for apptainer binary...
[2026-03-07 21:22:01] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-07 21:22:01] Running /usr/bin/apptainer --version
[2026-03-07 21:22:02] apptainer version 1.4.5
[2026-03-07 21:22:02] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-07 21:22:02] test-run
[2026-03-07 21:22:02] apptainer works
[2026-03-07 21:22:02] Set ATHENA_PROC_NUMBER=12
[2026-03-07 21:22:02] Set ATHENA_CORE_NUMBER=12
[2026-03-07 21:22:02] Starting ATLAS job with PandaID=7040353901
[2026-03-07 21:22:02] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc-client/slots/7 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-07 21:55:39]  *** The last 200 lines of the pilot log: ***
[2026-03-07 21:55:39]  inputddms=['NDGF-T1_DATADISK', 'CERN-PROD_DATADISK']
[2026-03-07 21:55:39]  is_altstaged=None
[2026-03-07 21:55:39]  is_tar=False
[2026-03-07 21:55:39]  lfn=log.48973281._000593.job.log.tgz.1
[2026-03-07 21:55:39]  mtime=0
[2026-03-07 21:55:39]  protocol_id=None
[2026-03-07 21:55:39]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2026-03-07 21:55:39]  replicas=None
[2026-03-07 21:55:39]  scope=mc23_13p6TeV
[2026-03-07 21:55:39]  status=None
[2026-03-07 21:55:39]  status_code=0
[2026-03-07 21:55:39]  storage_token=
[2026-03-07 21:55:39]  surl=/var/lib/boinc-client/slots/7/PanDA_Pilot-7040353901/log.48973281._000593.job.log.tgz.1
[2026-03-07 21:55:39]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/ad/eb/log.48973281._000593.job.log.tgz.1
[2026-03-07 21:55:39]  workdir=None
[2026-03-07 21:55:39] ]
[2026-03-07 21:55:39] 2026-03-07 21:55:06,619 | INFO     | transferring file log.48973281._000593.job.log.tgz.1 from /var/lib/boinc-client/slots/7/PanDA_Pilot-7040353901/log.48973281._000593.job.log.tgz.1 to /var/lib/boinc
[2026-03-07 21:55:39] 2026-03-07 21:55:06,619 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc-client/slots/7/PanDA_Pilot-7040353901/log.48973281._000593.job.log.tgz.1 /var/lib/boinc-client/slots/7/log.489732
[2026-03-07 21:55:39] 2026-03-07 21:55:06,625 | INFO     | adding to output.list: log.48973281._000593.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/ad/eb/log.48973281._000593.job.log.tg
[2026-03-07 21:55:39] 2026-03-07 21:55:06,625 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-03-07 21:55:39] 2026-03-07 21:55:06,625 | INFO     | summary of transferred files:
[2026-03-07 21:55:39] 2026-03-07 21:55:06,625 | INFO     |  -- lfn=log.48973281._000593.job.log.tgz.1, status_code=0, status=transferred
[2026-03-07 21:55:39] 2026-03-07 21:55:06,625 | INFO     | stage-out finished correctly
[2026-03-07 21:55:39] 2026-03-07 21:55:06,894 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-03-07 21:55:39] 2026-03-07 21:55:07,381 | INFO     | job 7040353901 has state=finished
[2026-03-07 21:55:39] 2026-03-07 21:55:07,382 | INFO     | preparing for final server update for job 7040353901 in state='finished'
[2026-03-07 21:55:39] 2026-03-07 21:55:07,382 | INFO     | reading metadata from: /var/lib/boinc-client/slots/7/PanDA_Pilot-7040353901/jobReport.json
[2026-03-07 21:55:39] 2026-03-07 21:55:07,383 | INFO     | added worker_node to metadata from /var/lib/boinc-client/slots/7/workernode_map.json
[2026-03-07 21:55:39] 2026-03-07 21:55:07,383 | INFO     | this job has now completed (state=finished)
[2026-03-07 21:55:39] 2026-03-07 21:55:07,383 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-03-07 21:55:39] 2026-03-07 21:55:07,383 | INFO     | log transfer has been attempted: DONE
[2026-03-07 21:55:39] 2026-03-07 21:55:07,383 | INFO     | job 7040353901 has finished - writing final server update
[2026-03-07 21:55:39] 2026-03-07 21:55:07,383 | INFO     | total number of processed events: 400 (read)
[2026-03-07 21:55:39] 2026-03-07 21:55:07,385 | INFO     | using path: /var/lib/boinc-client/slots/7/PanDA_Pilot-7040353901/memory_monitor_summary.json (trf name=prmon)
[2026-03-07 21:55:39] 2026-03-07 21:55:07,386 | INFO     | extracted standard info from prmon json
[2026-03-07 21:55:39] 2026-03-07 21:55:07,386 | INFO     | extracted standard memory fields from prmon json
[2026-03-07 21:55:39] 2026-03-07 21:55:07,386 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-03-07 21:55:39] 2026-03-07 21:55:07,386 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-03-07 21:55:39] 2026-03-07 21:55:07,386 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-03-07 21:55:39] 2026-03-07 21:55:07,386 | INFO     | fitting pss+swap vs Time
[2026-03-07 21:55:39] 2026-03-07 21:55:07,386 | INFO     | sum of square deviations: 4837300.0
[2026-03-07 21:55:39] 2026-03-07 21:55:07,386 | INFO     | sum of deviations: 1823251387.0
[2026-03-07 21:55:39] 2026-03-07 21:55:07,387 | INFO     | mean x: 1772919620.0
[2026-03-07 21:55:39] 2026-03-07 21:55:07,387 | INFO     | mean y: 2808294.12
[2026-03-07 21:55:39] 2026-03-07 21:55:07,387 | INFO     | intersect: -668237357956.5803
[2026-03-07 21:55:39] 2026-03-07 21:55:07,387 | INFO     | chi2: 0.37130977566559925
[2026-03-07 21:55:39] 2026-03-07 21:55:07,387 | INFO     | current memory leak: 376.92 B/s (using 25 data points, chi2=0.37)
[2026-03-07 21:55:39] 2026-03-07 21:55:07,387 | INFO     | could have reported an average CPU frequency of 4291 MHz (5 samples)
[2026-03-07 21:55:39] 2026-03-07 21:55:07,387 | INFO     | ..............................
[2026-03-07 21:55:39] 2026-03-07 21:55:07,387 | INFO     | . Timing measurements:
[2026-03-07 21:55:39] 2026-03-07 21:55:07,387 | INFO     | . get job = 0 s
[2026-03-07 21:55:39] 2026-03-07 21:55:07,387 | INFO     | . initial setup = 15 s
[2026-03-07 21:55:39] 2026-03-07 21:55:07,387 | INFO     | . payload setup = 18 s
[2026-03-07 21:55:39] 2026-03-07 21:55:07,387 | INFO     | . stage-in = 0 s
[2026-03-07 21:55:39] 2026-03-07 21:55:07,387 | INFO     | . payload execution = 1922 s
[2026-03-07 21:55:39] 2026-03-07 21:55:07,387 | INFO     | . stage-out = 0 s
[2026-03-07 21:55:39] 2026-03-07 21:55:07,387 | INFO     | . log creation = 0 s
[2026-03-07 21:55:39] 2026-03-07 21:55:07,387 | INFO     | ..............................
[2026-03-07 21:55:39] 2026-03-07 21:55:07,427 | INFO     | 
[2026-03-07 21:55:39] 2026-03-07 21:55:07,427 | INFO     | job summary report
[2026-03-07 21:55:39] 2026-03-07 21:55:07,427 | INFO     | --------------------------------------------------
[2026-03-07 21:55:39] 2026-03-07 21:55:07,427 | INFO     | PanDA job id: 7040353901
[2026-03-07 21:55:39] 2026-03-07 21:55:07,427 | INFO     | task id: 48973281
[2026-03-07 21:55:39] 2026-03-07 21:55:07,427 | INFO     | errors: (none)
[2026-03-07 21:55:39] 2026-03-07 21:55:07,427 | INFO     | status: LOG_TRANSFER = DONE 
[2026-03-07 21:55:39] 2026-03-07 21:55:07,427 | INFO     | pilot state: finished 
[2026-03-07 21:55:39] 2026-03-07 21:55:07,427 | INFO     | transexitcode: 0
[2026-03-07 21:55:39] 2026-03-07 21:55:07,427 | INFO     | exeerrorcode: 0
[2026-03-07 21:55:39] 2026-03-07 21:55:07,427 | INFO     | exeerrordiag: 
[2026-03-07 21:55:39] 2026-03-07 21:55:07,427 | INFO     | exitcode: 0
[2026-03-07 21:55:39] 2026-03-07 21:55:07,427 | INFO     | exitmsg: OK
[2026-03-07 21:55:39] 2026-03-07 21:55:07,427 | INFO     | cpuconsumptiontime: 18068 s
[2026-03-07 21:55:39] 2026-03-07 21:55:07,427 | INFO     | nevents: 400
[2026-03-07 21:55:39] 2026-03-07 21:55:07,427 | INFO     | neventsw: 0
[2026-03-07 21:55:39] 2026-03-07 21:55:07,427 | INFO     | pid: 440366
[2026-03-07 21:55:39] 2026-03-07 21:55:07,427 | INFO     | pgrp: 440366
[2026-03-07 21:55:39] 2026-03-07 21:55:07,427 | INFO     | corecount: 12
[2026-03-07 21:55:39] 2026-03-07 21:55:07,427 | INFO     | event service: False
[2026-03-07 21:55:39] 2026-03-07 21:55:07,427 | INFO     | sizes: {0: 2295851, 11: 2295851, 1945: 2329867, 1946: 2330037}
[2026-03-07 21:55:39] 2026-03-07 21:55:07,427 | INFO     | --------------------------------------------------
[2026-03-07 21:55:39] 2026-03-07 21:55:07,427 | INFO     | 
[2026-03-07 21:55:39] 2026-03-07 21:55:07,427 | INFO     | executing command: ls -lF /var/lib/boinc-client/slots/7
[2026-03-07 21:55:39] 2026-03-07 21:55:07,436 | INFO     | queue jobs had 0 job(s) [purged]
[2026-03-07 21:55:39] 2026-03-07 21:55:07,436 | INFO     | queue payloads had 0 job(s) [purged]
[2026-03-07 21:55:39] 2026-03-07 21:55:07,436 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-07 21:55:39] 2026-03-07 21:55:07,436 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-07 21:55:39] 2026-03-07 21:55:07,436 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-07 21:55:39] 2026-03-07 21:55:07,436 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-07 21:55:39] 2026-03-07 21:55:07,436 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-07 21:55:39] 2026-03-07 21:55:07,436 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-07 21:55:39] 2026-03-07 21:55:07,436 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-07 21:55:39] 2026-03-07 21:55:07,436 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-07 21:55:39] 2026-03-07 21:55:07,436 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-07 21:55:39] 2026-03-07 21:55:07,436 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-07 21:55:39] 2026-03-07 21:55:07,436 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-07 21:55:39] 2026-03-07 21:55:07,436 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-07 21:55:39] 2026-03-07 21:55:07,436 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-07 21:55:39] 2026-03-07 21:55:07,437 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-07 21:55:39] 2026-03-07 21:55:07,437 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-07 21:55:39] 2026-03-07 21:55:07,437 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-07 21:55:39] 2026-03-07 21:55:07,437 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-07 21:55:39] 2026-03-07 21:55:07,437 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-07 21:55:39] 2026-03-07 21:55:07,437 | INFO     | job 7040353901 has completed (purged errors)
[2026-03-07 21:55:39] 2026-03-07 21:55:07,437 | INFO     | overall cleanup function is called
[2026-03-07 21:55:39] 2026-03-07 21:55:07,610 | WARNING  | process 440366 can no longer be monitored (due to stat problems) - aborting
[2026-03-07 21:55:39] 2026-03-07 21:55:07,623 | INFO     | using path: /var/lib/boinc-client/slots/7/memory_monitor_summary.json (trf name=prmon)
[2026-03-07 21:55:39] 2026-03-07 21:55:07,639 | INFO     | number of running child processes to parent process 440366: 1
[2026-03-07 21:55:39] 2026-03-07 21:55:07,639 | INFO     | maximum number of monitored processes: 6
[2026-03-07 21:55:39] 2026-03-07 21:55:07,639 | INFO     | aborting job monitoring since job object (job id=7040353901) has expired
[2026-03-07 21:55:39] 2026-03-07 21:55:08,443 | INFO     | --- collectZombieJob: --- 10, [440366]
[2026-03-07 21:55:39] 2026-03-07 21:55:08,443 | INFO     | zombie collector waiting for pid 440366
[2026-03-07 21:55:39] 2026-03-07 21:55:08,443 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-07 21:55:39] 2026-03-07 21:55:08,443 | INFO     | collected zombie processes
[2026-03-07 21:55:39] 2026-03-07 21:55:08,443 | INFO     | will attempt to kill all subprocesses of pid=440366
[2026-03-07 21:55:39] 2026-03-07 21:55:08,468 | INFO     | process IDs to be killed: [440366] (in reverse order)
[2026-03-07 21:55:39] 2026-03-07 21:55:08,484 | WARNING  | found no corresponding commands to process id(s)
[2026-03-07 21:55:39] 2026-03-07 21:55:08,485 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-07 21:55:39] 2026-03-07 21:55:08,485 | INFO     | did not find any defunct processes belonging to 440366
[2026-03-07 21:55:39] 2026-03-07 21:55:08,486 | INFO     | did not find any defunct processes belonging to 440366
[2026-03-07 21:55:39] 2026-03-07 21:55:08,486 | INFO     | ready for new job
[2026-03-07 21:55:39] 2026-03-07 21:55:08,486 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-07 21:55:39] 2026-03-07 21:55:08,486 | INFO     | **************************************
[2026-03-07 21:55:39] 2026-03-07 21:55:08,486 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-03-07 21:55:39] 2026-03-07 21:55:08,486 | INFO     | **************************************
[2026-03-07 21:55:39] 2026-03-07 21:55:08,486 | INFO     | 
[2026-03-07 21:55:39] 2026-03-07 21:55:08,487 | INFO     | pilot is running in a VM
[2026-03-07 21:55:39] 2026-03-07 21:55:08,487 | INFO     | architecture information:
[2026-03-07 21:55:39] 2026-03-07 21:55:08,487 | INFO     | executing command: cat /etc/os-release
[2026-03-07 21:55:39] 2026-03-07 21:55:08,491 | INFO     | cat /etc/os-release:
[2026-03-07 21:55:39] NAME="CentOS Linux"
[2026-03-07 21:55:39] VERSION="7 (Core)"
[2026-03-07 21:55:39] ID="centos"
[2026-03-07 21:55:39] ID_LIKE="rhel fedora"
[2026-03-07 21:55:39] VERSION_ID="7"
[2026-03-07 21:55:39] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-07 21:55:39] ANSI_COLOR="0;31"
[2026-03-07 21:55:39] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-07 21:55:39] HOME_URL="https://www.centos.org/"
[2026-03-07 21:55:39] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-07 21:55:39] 
[2026-03-07 21:55:39] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-07 21:55:39] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-07 21:55:39] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-07 21:55:39] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-07 21:55:39] 
[2026-03-07 21:55:39] 2026-03-07 21:55:08,491 | INFO     | **************************************
[2026-03-07 21:55:39] 2026-03-07 21:55:08,994 | INFO     | executing command: df -mP /var/lib/boinc-client/slots/7
[2026-03-07 21:55:39] 2026-03-07 21:55:08,999 | INFO     | sufficient remaining disk space (66452455424 B)
[2026-03-07 21:55:39] 2026-03-07 21:55:08,999 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-07 21:55:39] 2026-03-07 21:55:08,999 | INFO     | current server update state: UPDATING_FINAL
[2026-03-07 21:55:39] 2026-03-07 21:55:08,999 | INFO     | update_server=False
[2026-03-07 21:55:39] 2026-03-07 21:55:08,999 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-07 21:55:39] 2026-03-07 21:55:08,999 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-07 21:55:39] 2026-03-07 21:55:08,999 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-07 21:55:39] 2026-03-07 21:55:08,999 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-07 21:55:39] 2026-03-07 21:55:08,999 | INFO     | aborting loop
[2026-03-07 21:55:39] 2026-03-07 21:55:09,064 | INFO     | all payload control threads have been joined
[2026-03-07 21:55:39] 2026-03-07 21:55:09,557 | INFO     | all data control threads have been joined
[2026-03-07 21:55:39] 2026-03-07 21:55:09,650 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-07 21:55:39] 2026-03-07 21:55:09,879 | INFO     | all job control threads have been joined
[2026-03-07 21:55:39] 2026-03-07 21:55:10,001 | INFO     | [job] queue monitor thread has finished
[2026-03-07 21:55:39] 2026-03-07 21:55:10,004 | INFO     | [job] retrieve thread has finished
[2026-03-07 21:55:39] 2026-03-07 21:55:10,004 | INFO     | [job] job monitor thread has finished
[2026-03-07 21:55:39] 2026-03-07 21:55:10,069 | INFO     | [payload] control thread has finished
[2026-03-07 21:55:39] 2026-03-07 21:55:10,078 | INFO     | job.realtimelogging is not enabled
[2026-03-07 21:55:39] 2026-03-07 21:55:10,182 | INFO     | [payload] failed_post thread has finished
[2026-03-07 21:55:39] 2026-03-07 21:55:10,341 | INFO     | [payload] execute_payloads thread has finished
[2026-03-07 21:55:39] 2026-03-07 21:55:10,563 | INFO     | [data] control thread has finished
[2026-03-07 21:55:39] 2026-03-07 21:55:10,623 | INFO     | [payload] validate_post thread has finished
[2026-03-07 21:55:39] 2026-03-07 21:55:10,689 | INFO     | [job] validate thread has finished
[2026-03-07 21:55:39] 2026-03-07 21:55:10,884 | INFO     | [job] control thread has finished
[2026-03-07 21:55:39] 2026-03-07 21:55:10,906 | INFO     | [job] create_data_payload thread has finished
[2026-03-07 21:55:39] 2026-03-07 21:55:11,017 | INFO     | [payload] validate_pre thread has finished
[2026-03-07 21:55:39] 2026-03-07 21:55:11,082 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-07 21:55:39] 2026-03-07 21:55:11,147 | INFO     | [data] copytool_in thread has finished
[2026-03-07 21:55:39] 2026-03-07 21:55:11,656 | INFO     | [data] copytool_out thread has finished
[2026-03-07 21:55:39] 2026-03-07 21:55:13,004 | INFO     | [data] queue_monitor thread has finished
[2026-03-07 21:55:39] 2026-03-07 21:55:33,017 | INFO     | [monitor] cgroup control has ended
[2026-03-07 21:55:39] 2026-03-07 21:55:34,023 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 132337984784192)>', '<ExcThread(monitor, started 132337018836736)>']
[2026-03-07 21:55:39] 2026-03-07 21:55:39,048 | INFO     | all workflow threads have been joined
[2026-03-07 21:55:39] 2026-03-07 21:55:39,048 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-07 21:55:39] 2026-03-07 21:55:39,048 | INFO     | traces error code: 0
[2026-03-07 21:55:39] 2026-03-07 21:55:39,049 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-07 21:55:39] 2026-03-07 21:55:39,174 | INFO     | PID=435802 has CPU usage=1.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-03-07 21:55:39] 2026-03-07 21:55:39,174 | INFO     | .. there are 2 such processes running
[2026-03-07 21:55:39] 2026-03-07 21:55:39,174 | INFO     | found 0 job(s) in 20 queues
[2026-03-07 21:55:39] 2026-03-07 21:55:39,174 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-07 21:55:39] 2026-03-07 21:55:39,174 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-07 21:55:39] 2026-03-07 21:55:39,174 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-07 21:55:39] 2026-03-07 21:55:39,174 | INFO     | [monitor] control thread has ended
[2026-03-07 21:55:39] 2026-03-07 21:55:39,214 [wrapper] ==== pilot stdout END ====
[2026-03-07 21:55:39] 2026-03-07 21:55:39,215 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-07 21:55:39] 2026-03-07 21:55:39,216 [wrapper] pilotpid: 435802
[2026-03-07 21:55:39] 2026-03-07 21:55:39,217 [wrapper] Pilot exit status: 0
[2026-03-07 21:55:39] 2026-03-07 21:55:39,221 [wrapper] pandaids: 7040353901
[2026-03-07 21:55:39] 2026-03-07 21:55:39,229 [wrapper] cleanup supervisor_pilot  458136 435803
[2026-03-07 21:55:39] 2026-03-07 21:55:39,230 [wrapper] Test setup, not cleaning
[2026-03-07 21:55:39] 2026-03-07 21:55:39,232 [wrapper] apfmon messages muted
[2026-03-07 21:55:39] 2026-03-07 21:55:39,232 [wrapper] ==== wrapper stdout END ====
[2026-03-07 21:55:39] 2026-03-07 21:55:39,233 [wrapper] ==== wrapper stderr END ====
[2026-03-07 21:55:39]  *** Error codes and diagnostics ***
[2026-03-07 21:55:39]     "exeErrorCode": 0,
[2026-03-07 21:55:39]     "exeErrorDiag": "",
[2026-03-07 21:55:39]     "pilotErrorCode": 0,
[2026-03-07 21:55:39]     "pilotErrorDiag": "",
[2026-03-07 21:55:39]  *** Listing of results directory ***
[2026-03-07 21:55:39] total 504292
[2026-03-07 21:55:39] -rw-r--r-- 1 boinc boinc    584627 Mar  4 16:22 pilot3.tar.gz
[2026-03-07 21:55:39] -rw-r--r-- 1 boinc boinc      5111 Mar  4 16:49 queuedata.json
[2026-03-07 21:55:39] -rwx------ 1 boinc boinc     36322 Mar  4 16:50 runpilot2-wrapper.sh
[2026-03-07 21:55:39] -rw-r--r-- 1 boinc boinc       100 Mar  7 21:22 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-07 21:55:39] -rwxr-xr-x 1 boinc boinc      7986 Mar  7 21:22 run_atlas
[2026-03-07 21:55:39] -rw-r--r-- 1 boinc boinc       105 Mar  7 21:22 job.xml
[2026-03-07 21:55:39] -rw-r--r-- 1 boinc boinc      7993 Mar  7 21:22 init_data.xml
[2026-03-07 21:55:39] -rw-r--r-- 2 boinc boinc 299199835 Mar  7 21:22 EVNT.48716896._000024.pool.root.1
[2026-03-07 21:55:39] -rw-r--r-- 2 boinc boinc     15845 Mar  7 21:22 start_atlas.sh
[2026-03-07 21:55:39] drwxrwx--x 2 boinc boinc      4096 Mar  7 21:22 shared
[2026-03-07 21:55:39] -rw-r--r-- 2 boinc boinc    597964 Mar  7 21:22 input.tar.gz
[2026-03-07 21:55:39] -rw-r--r-- 1 boinc boinc         0 Mar  7 21:22 boinc_lockfile
[2026-03-07 21:55:39] -rw-r--r-- 1 boinc boinc      2595 Mar  7 21:22 pandaJob.out
[2026-03-07 21:55:39] -rw------- 1 boinc boinc    999169 Mar  7 21:22 agis_schedconf.cvmfs.json
[2026-03-07 21:55:39] -rw------- 1 boinc boinc   1521291 Mar  7 21:22 agis_ddmendpoints.agis.ALL.json
[2026-03-07 21:55:39] -rw------- 1 boinc boinc       411 Mar  7 21:22 workernode_map.json
[2026-03-07 21:55:39] drwx------ 5 boinc boinc      4096 Mar  7 21:22 pilot3
[2026-03-07 21:55:39] -rw------- 1 boinc boinc 211902616 Mar  7 21:54 HITS.48973281._000593.pool.root.1
[2026-03-07 21:55:39] -rw------- 1 boinc boinc      1019 Mar  7 21:55 memory_monitor_summary.json
[2026-03-07 21:55:39] -rw------- 1 boinc boinc    353608 Mar  7 21:55 log.48973281._000593.job.log.tgz.1
[2026-03-07 21:55:39] -rw------- 1 boinc boinc      6271 Mar  7 21:55 heartbeat.json
[2026-03-07 21:55:39] -rw-r--r-- 1 boinc boinc       529 Mar  7 21:55 boinc_task_state.xml
[2026-03-07 21:55:39] -rw-r--r-- 1 boinc boinc      8192 Mar  7 21:55 boinc_mmap_file
[2026-03-07 21:55:39] -rw-r--r-- 1 boinc boinc        27 Mar  7 21:55 wrapper_checkpoint.txt
[2026-03-07 21:55:39] -rw------- 1 boinc boinc        95 Mar  7 21:55 pilot_heartbeat.json
[2026-03-07 21:55:39] -rw------- 1 boinc boinc       821 Mar  7 21:55 pilotlog.txt
[2026-03-07 21:55:39] -rw------- 1 boinc boinc    327450 Mar  7 21:55 log.48973281._000593.job.log.1
[2026-03-07 21:55:39] -rw------- 1 boinc boinc       357 Mar  7 21:55 output.list
[2026-03-07 21:55:39] -rw-r--r-- 1 boinc boinc       620 Mar  7 21:55 runtime_log
[2026-03-07 21:55:39] -rw------- 1 boinc boinc    696320 Mar  7 21:55 result.tar.gz
[2026-03-07 21:55:39] -rw------- 1 boinc boinc       642 Mar  7 21:55 vFpKDmOb4H9n9Rq4apOajLDm4fhM0noT9bVooX4SDmMzILDmEqfLmm.diag
[2026-03-07 21:55:39] -rw-r--r-- 1 boinc boinc      8889 Mar  7 21:55 runtime_log.err
[2026-03-07 21:55:39] -rw-r--r-- 1 boinc boinc     21549 Mar  7 21:55 stderr.txt
[2026-03-07 21:55:39] HITS file was successfully produced:
[2026-03-07 21:55:39] -rw------- 1 boinc boinc 211902616 Mar  7 21:54 shared/HITS.pool.root.1
[2026-03-07 21:55:39]  *** Contents of shared directory: ***
[2026-03-07 21:55:39] total 500416
[2026-03-07 21:55:39] -rw-r--r-- 2 boinc boinc 299199835 Mar  7 21:22 ATLAS.root_0
[2026-03-07 21:55:39] -rw-r--r-- 2 boinc boinc     15845 Mar  7 21:22 start_atlas.sh
[2026-03-07 21:55:39] -rw-r--r-- 2 boinc boinc    597964 Mar  7 21:22 input.tar.gz
[2026-03-07 21:55:39] -rw------- 1 boinc boinc 211902616 Mar  7 21:54 HITS.pool.root.1
[2026-03-07 21:55:39] -rw------- 1 boinc boinc    696320 Mar  7 21:55 result.tar.gz
21:55:40 (431616): run_atlas exited; CPU time 18076.063488
21:55:40 (431616): called boinc_finish(0)

</stderr_txt>
]]>

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