Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
00:28:57 (4742): wrapper (7.7.26015): starting
00:28:57 (4742): wrapper: running run_atlas (--nthreads 8)
[2026-03-08 00:28:57] Arguments: --nthreads 8
[2026-03-08 00:28:57] Threads: 8
[2026-03-08 00:28:57] Checking for CVMFS
[2026-03-08 00:28:58] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-08 00:29:01] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-08 00:29:01] Running cvmfs_config stat atlas.cern.ch
[2026-03-08 00:29:02] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-08 00:29:02] 2.11.2.0 27806 118138 135752 157020 0 53 19109163 25165825 96 130560 165 39012040 99.808 27557597 967 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2026-03-08 00:29:02] CVMFS is ok
[2026-03-08 00:29:02] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-08 00:29:02] Checking for apptainer binary...
[2026-03-08 00:29:02] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-08 00:29:02] Running /usr/bin/apptainer --version
[2026-03-08 00:29:03] apptainer version 1.3.2-1.el7
[2026-03-08 00:29:03] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-08 00:29:11] cg-vwn467.simple-grid.lan
[2026-03-08 00:29:11] apptainer works
[2026-03-08 00:29:11] Set ATHENA_PROC_NUMBER=8
[2026-03-08 00:29:11] Set ATHENA_CORE_NUMBER=8
[2026-03-08 00:29:11] Starting ATLAS job with PandaID=7038975788
[2026-03-08 00:29:11] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/6 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-08 04:11:36]  *** The last 200 lines of the pilot log: ***
[2026-03-08 04:11:36] 2026-03-08 03:10:27,702 | INFO     | using path: /var/lib/boinc/slots/6/PanDA_Pilot-7038975788/memory_monitor_summary.json (trf name=prmon)
[2026-03-08 04:11:36] 2026-03-08 03:10:27,703 | INFO     | extracted standard info from prmon json
[2026-03-08 04:11:36] 2026-03-08 03:10:27,703 | INFO     | extracted standard memory fields from prmon json
[2026-03-08 04:11:36] 2026-03-08 03:10:27,703 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-03-08 04:11:36] 2026-03-08 03:10:27,704 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-03-08 04:11:36] 2026-03-08 03:10:27,704 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-03-08 04:11:36] 2026-03-08 03:10:27,708 | INFO     | fitting pss+swap vs Time
[2026-03-08 04:11:36] 2026-03-08 03:10:27,708 | INFO     | sum of square deviations: 2750295288.0
[2026-03-08 04:11:36] 2026-03-08 03:10:27,710 | INFO     | sum of deviations: 72971211143.0
[2026-03-08 04:11:36] 2026-03-08 03:10:27,710 | INFO     | mean x: 1772933079.0
[2026-03-08 04:11:36] 2026-03-08 03:10:27,710 | INFO     | mean y: 2418066.9903381644
[2026-03-08 04:11:36] 2026-03-08 03:10:27,710 | INFO     | intersect: -47037285129.4608
[2026-03-08 04:11:36] 2026-03-08 03:10:27,711 | INFO     | chi2: 7.768968787736281
[2026-03-08 04:11:36] 2026-03-08 03:10:27,711 | INFO     | sum of square deviations: 2555770710.5
[2026-03-08 04:11:36] 2026-03-08 03:10:27,713 | INFO     | sum of deviations: 84732933889.99998
[2026-03-08 04:11:36] 2026-03-08 03:10:27,713 | INFO     | mean x: 1772932926.5
[2026-03-08 04:11:36] 2026-03-08 03:10:27,713 | INFO     | mean y: 2427078.0594059406
[2026-03-08 04:11:36] 2026-03-08 03:10:27,713 | INFO     | intersect: -58776636253.14966
[2026-03-08 04:11:36] 2026-03-08 03:10:27,714 | INFO     | chi2: 7.0797566643915095
[2026-03-08 04:11:36] 2026-03-08 03:10:27,714 | INFO     | current chi2=7.0797566643915095 (change=8.871346277420091 %)
[2026-03-08 04:11:36] 2026-03-08 03:10:27,714 | INFO     | right removable region: 201
[2026-03-08 04:11:36] 2026-03-08 03:10:27,714 | INFO     | sum of square deviations: 2555770710.5
[2026-03-08 04:11:36] 2026-03-08 03:10:27,716 | INFO     | sum of deviations: 3414873208.000019
[2026-03-08 04:11:36] 2026-03-08 03:10:27,716 | INFO     | mean x: 1772933231.5
[2026-03-08 04:11:36] 2026-03-08 03:10:27,716 | INFO     | mean y: 2472549.5247524753
[2026-03-08 04:11:36] 2026-03-08 03:10:27,716 | INFO     | intersect: -2366418433.906934
[2026-03-08 04:11:36] 2026-03-08 03:10:27,716 | INFO     | chi2: 2.9586993759998856
[2026-03-08 04:11:36] 2026-03-08 03:10:27,716 | INFO     | current chi2=2.9586993759998856 (change=61.91644661167457 %)
[2026-03-08 04:11:36] 2026-03-08 03:10:27,717 | INFO     | sum of square deviations: 2370641658.0
[2026-03-08 04:11:36] 2026-03-08 03:10:27,718 | INFO     | sum of deviations: -40094640590.0
[2026-03-08 04:11:36] 2026-03-08 03:10:27,718 | INFO     | mean x: 1772933384.0
[2026-03-08 04:11:36] 2026-03-08 03:10:27,719 | INFO     | mean y: 2508221.649746193
[2026-03-08 04:11:36] 2026-03-08 03:10:27,719 | INFO     | intersect: 29988114262.78532
[2026-03-08 04:11:36] 2026-03-08 03:10:27,719 | INFO     | chi2: 0.987714122667324
[2026-03-08 04:11:36] 2026-03-08 03:10:27,719 | INFO     | current chi2=0.987714122667324 (change=66.6166109784801 %)
[2026-03-08 04:11:36] 2026-03-08 03:10:27,720 | INFO     | sum of square deviations: 2194675568.0
[2026-03-08 04:11:36] 2026-03-08 03:10:27,721 | INFO     | sum of deviations: -39594388465.5
[2026-03-08 04:11:36] 2026-03-08 03:10:27,721 | INFO     | mean x: 1772933536.5
[2026-03-08 04:11:36] 2026-03-08 03:10:27,721 | INFO     | mean y: 2507721.203125
[2026-03-08 04:11:36] 2026-03-08 03:10:27,721 | INFO     | intersect: 31988200819.18804
[2026-03-08 04:11:36] 2026-03-08 03:10:27,722 | INFO     | chi2: 0.9588001131679935
[2026-03-08 04:11:36] 2026-03-08 03:10:27,722 | INFO     | current chi2=0.9588001131679935 (change=2.927366212123007 %)
[2026-03-08 04:11:36] 2026-03-08 03:10:27,722 | INFO     | left removable region: 30
[2026-03-08 04:11:36] 2026-03-08 03:10:27,722 | INFO     | sum of square deviations: 1550429070.0
[2026-03-08 04:11:36] 2026-03-08 03:10:27,723 | INFO     | sum of deviations: -6129553767.999998
[2026-03-08 04:11:36] 2026-03-08 03:10:27,724 | INFO     | mean x: 1772933811.0
[2026-03-08 04:11:36] 2026-03-08 03:10:27,724 | INFO     | mean y: 2499546.32748538
[2026-03-08 04:11:36] 2026-03-08 03:10:27,729 | INFO     | intersect: 7011716112.184088
[2026-03-08 04:11:36] 2026-03-08 03:10:27,730 | INFO     | chi2: 0.07964521822575793
[2026-03-08 04:11:36] 2026-03-08 03:10:27,730 | INFO     | current memory leak: -3.95 B/s (using 171 data points, chi2=0.08)
[2026-03-08 04:11:36] 2026-03-08 03:10:27,730 | INFO     | could have reported an average CPU frequency of 2250 MHz (11 samples)
[2026-03-08 04:11:36] 2026-03-08 03:10:27,731 | INFO     | ..............................
[2026-03-08 04:11:36] 2026-03-08 03:10:27,731 | INFO     | . Timing measurements:
[2026-03-08 04:11:36] 2026-03-08 03:10:27,737 | INFO     | . get job = 0 s
[2026-03-08 04:11:36] 2026-03-08 03:10:27,737 | INFO     | . initial setup = 117 s
[2026-03-08 04:11:36] 2026-03-08 03:10:27,737 | INFO     | . payload setup = 149 s
[2026-03-08 04:11:36] 2026-03-08 03:10:27,737 | INFO     | . stage-in = 0 s
[2026-03-08 04:11:36] 2026-03-08 03:10:27,738 | INFO     | . payload execution = 12759 s
[2026-03-08 04:11:36] 2026-03-08 03:10:27,738 | INFO     | . stage-out = 4 s
[2026-03-08 04:11:36] 2026-03-08 03:10:27,738 | INFO     | . log creation = 1 s
[2026-03-08 04:11:36] 2026-03-08 03:10:27,738 | INFO     | ..............................
[2026-03-08 04:11:36] 2026-03-08 03:10:27,931 | INFO     | 
[2026-03-08 04:11:36] 2026-03-08 03:10:27,931 | INFO     | job summary report
[2026-03-08 04:11:36] 2026-03-08 03:10:27,931 | INFO     | --------------------------------------------------
[2026-03-08 04:11:36] 2026-03-08 03:10:27,932 | INFO     | PanDA job id: 7038975788
[2026-03-08 04:11:36] 2026-03-08 03:10:27,932 | INFO     | task id: 48955010
[2026-03-08 04:11:36] 2026-03-08 03:10:27,932 | INFO     | errors: (none)
[2026-03-08 04:11:36] 2026-03-08 03:10:27,932 | INFO     | status: LOG_TRANSFER = DONE 
[2026-03-08 04:11:36] 2026-03-08 03:10:27,932 | INFO     | pilot state: finished 
[2026-03-08 04:11:36] 2026-03-08 03:10:27,932 | INFO     | transexitcode: 0
[2026-03-08 04:11:36] 2026-03-08 03:10:27,932 | INFO     | exeerrorcode: 0
[2026-03-08 04:11:36] 2026-03-08 03:10:27,932 | INFO     | exeerrordiag: 
[2026-03-08 04:11:36] 2026-03-08 03:10:27,932 | INFO     | exitcode: 0
[2026-03-08 04:11:36] 2026-03-08 03:10:27,933 | INFO     | exitmsg: OK
[2026-03-08 04:11:36] 2026-03-08 03:10:27,933 | INFO     | cpuconsumptiontime: 47389 s
[2026-03-08 04:11:36] 2026-03-08 03:10:27,933 | INFO     | nevents: 400
[2026-03-08 04:11:36] 2026-03-08 03:10:27,933 | INFO     | neventsw: 0
[2026-03-08 04:11:36] 2026-03-08 03:10:27,933 | INFO     | pid: 13139
[2026-03-08 04:11:36] 2026-03-08 03:10:27,933 | INFO     | pgrp: 13139
[2026-03-08 04:11:36] 2026-03-08 03:10:27,933 | INFO     | corecount: 8
[2026-03-08 04:11:36] 2026-03-08 03:10:27,933 | INFO     | event service: False
[2026-03-08 04:11:36] 2026-03-08 03:10:27,933 | INFO     | sizes: {0: 2294660, 1: 2295345, 2: 2295806, 12912: 2325861, 12918: 2334859, 12921: 2334915, 12922: 2335237}
[2026-03-08 04:11:36] 2026-03-08 03:10:27,934 | INFO     | --------------------------------------------------
[2026-03-08 04:11:36] 2026-03-08 03:10:27,934 | INFO     | 
[2026-03-08 04:11:36] 2026-03-08 03:10:27,934 | INFO     | executing command: ls -lF /var/lib/boinc/slots/6
[2026-03-08 04:11:36] 2026-03-08 03:10:28,207 | INFO     | time since job start (12925s) is within the limit (349056.0s)
[2026-03-08 04:11:36] 2026-03-08 03:10:28,507 | INFO     | queue jobs had 0 job(s) [purged]
[2026-03-08 04:11:36] 2026-03-08 03:10:28,508 | INFO     | queue payloads had 0 job(s) [purged]
[2026-03-08 04:11:36] 2026-03-08 03:10:28,508 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-08 04:11:36] 2026-03-08 03:10:28,508 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-08 04:11:36] 2026-03-08 03:10:28,508 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-08 04:11:36] 2026-03-08 03:10:28,508 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-08 04:11:36] 2026-03-08 03:10:28,508 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-08 04:11:36] 2026-03-08 03:10:28,508 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-08 04:11:36] 2026-03-08 03:10:28,508 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-08 04:11:36] 2026-03-08 03:10:28,508 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-08 04:11:36] 2026-03-08 03:10:28,509 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-08 04:11:36] 2026-03-08 03:10:28,509 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-08 04:11:36] 2026-03-08 03:10:28,509 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-08 04:11:36] 2026-03-08 03:10:28,509 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-08 04:11:36] 2026-03-08 03:10:28,509 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-08 04:11:36] 2026-03-08 03:10:28,509 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-08 04:11:36] 2026-03-08 03:10:28,509 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-08 04:11:36] 2026-03-08 03:10:28,509 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-08 04:11:36] 2026-03-08 03:10:28,509 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-08 04:11:36] 2026-03-08 03:10:28,509 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-08 04:11:36] 2026-03-08 03:10:28,510 | INFO     | job 7038975788 has completed (purged errors)
[2026-03-08 04:11:36] 2026-03-08 03:10:28,510 | INFO     | overall cleanup function is called
[2026-03-08 04:11:36] 2026-03-08 03:10:29,314 | INFO     | PID=8706 has CPU usage=7.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2026-03-08 04:11:36] 2026-03-08 03:10:29,314 | INFO     | .. there are 2 such processes running
[2026-03-08 04:11:36] 2026-03-08 03:10:29,518 | INFO     | --- collectZombieJob: --- 10, [13139]
[2026-03-08 04:11:36] 2026-03-08 03:10:29,518 | INFO     | zombie collector waiting for pid 13139
[2026-03-08 04:11:36] 2026-03-08 03:10:29,518 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-08 04:11:36] 2026-03-08 03:10:29,519 | INFO     | collected zombie processes
[2026-03-08 04:11:36] 2026-03-08 03:10:29,519 | INFO     | will attempt to kill all subprocesses of pid=13139
[2026-03-08 04:11:36] 2026-03-08 03:10:29,605 | INFO     | process IDs to be killed: [13139] (in reverse order)
[2026-03-08 04:11:36] 2026-03-08 03:10:30,608 | WARNING  | found no corresponding commands to process id(s)
[2026-03-08 04:11:36] 2026-03-08 03:10:30,608 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-08 04:11:36] 2026-03-08 03:10:30,610 | INFO     | did not find any defunct processes belonging to 13139
[2026-03-08 04:11:36] 2026-03-08 03:10:30,611 | INFO     | did not find any defunct processes belonging to 13139
[2026-03-08 04:11:36] 2026-03-08 03:10:30,612 | INFO     | ready for new job
[2026-03-08 04:11:36] 2026-03-08 03:10:30,612 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-08 04:11:36] 2026-03-08 03:10:30,614 | INFO     | **************************************
[2026-03-08 04:11:36] 2026-03-08 03:10:30,614 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-03-08 04:11:36] 2026-03-08 03:10:30,614 | INFO     | **************************************
[2026-03-08 04:11:36] 2026-03-08 03:10:30,614 | INFO     | 
[2026-03-08 04:11:36] 2026-03-08 03:10:30,615 | INFO     | pilot is running in a VM
[2026-03-08 04:11:36] 2026-03-08 03:10:30,615 | INFO     | architecture information:
[2026-03-08 04:11:36] 2026-03-08 03:10:30,621 | INFO     | executing command: cat /etc/os-release
[2026-03-08 04:11:36] 2026-03-08 03:10:30,925 | INFO     | cat /etc/os-release:
[2026-03-08 04:11:36] NAME="CentOS Linux"
[2026-03-08 04:11:36] VERSION="7 (Core)"
[2026-03-08 04:11:36] ID="centos"
[2026-03-08 04:11:36] ID_LIKE="rhel fedora"
[2026-03-08 04:11:36] VERSION_ID="7"
[2026-03-08 04:11:36] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-08 04:11:36] ANSI_COLOR="0;31"
[2026-03-08 04:11:36] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-08 04:11:36] HOME_URL="https://www.centos.org/"
[2026-03-08 04:11:36] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-08 04:11:36] 
[2026-03-08 04:11:36] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-08 04:11:36] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-08 04:11:36] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-08 04:11:36] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-08 04:11:36] 
[2026-03-08 04:11:36] 2026-03-08 03:10:30,926 | INFO     | **************************************
[2026-03-08 04:11:36] 2026-03-08 03:10:31,428 | INFO     | executing command: df -mP /var/lib/boinc/slots/6
[2026-03-08 04:11:36] 2026-03-08 03:10:31,646 | INFO     | sufficient remaining disk space (495561211904 B)
[2026-03-08 04:11:36] 2026-03-08 03:10:31,646 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-08 04:11:36] 2026-03-08 03:10:31,646 | INFO     | current server update state: UPDATING_FINAL
[2026-03-08 04:11:36] 2026-03-08 03:10:31,647 | INFO     | update_server=False
[2026-03-08 04:11:36] 2026-03-08 03:10:31,647 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-08 04:11:36] 2026-03-08 03:10:31,710 | INFO     | all data control threads have been joined
[2026-03-08 04:11:36] 2026-03-08 03:10:31,976 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-08 04:11:36] 2026-03-08 03:10:32,252 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-08 04:11:36] 2026-03-08 03:10:32,252 | INFO     | aborting loop
[2026-03-08 04:11:36] 2026-03-08 03:10:32,652 | INFO     | [job] retrieve thread has finished
[2026-03-08 04:11:36] 2026-03-08 03:10:32,716 | INFO     | [data] control thread has finished
[2026-03-08 04:11:36] 2026-03-08 03:10:32,840 | INFO     | all payload control threads have been joined
[2026-03-08 04:11:36] 2026-03-08 03:10:32,887 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-08 04:11:36] 2026-03-08 03:10:32,958 | INFO     | all job control threads have been joined
[2026-03-08 04:11:36] 2026-03-08 03:10:33,046 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-08 04:11:36] 2026-03-08 03:10:33,258 | INFO     | [job] job monitor thread has finished
[2026-03-08 04:11:36] 2026-03-08 03:10:33,269 | INFO     | [job] validate thread has finished
[2026-03-08 04:11:36] 2026-03-08 03:10:33,386 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-08 04:11:36] 2026-03-08 03:10:33,615 | INFO     | [payload] validate_post thread has finished
[2026-03-08 04:11:36] 2026-03-08 03:10:33,645 | INFO     | [payload] failed_post thread has finished
[2026-03-08 04:11:36] 2026-03-08 03:10:33,846 | INFO     | [payload] control thread has finished
[2026-03-08 04:11:36] 2026-03-08 03:10:33,893 | INFO     | [job] queue monitor thread has finished
[2026-03-08 04:11:36] 2026-03-08 03:10:33,928 | INFO     | [job] create_data_payload thread has finished
[2026-03-08 04:11:36] 2026-03-08 03:10:33,964 | INFO     | [job] control thread has finished
[2026-03-08 04:11:36] 2026-03-08 03:10:33,983 | INFO     | [data] copytool_out thread has finished
[2026-03-08 04:11:36] 2026-03-08 03:10:34,036 | INFO     | [data] copytool_in thread has finished
[2026-03-08 04:11:36] 2026-03-08 03:10:34,051 | INFO     | [payload] validate_pre thread has finished
[2026-03-08 04:11:36] 2026-03-08 03:10:34,058 | INFO     | [payload] execute_payloads thread has finished
[2026-03-08 04:11:36] 2026-03-08 03:10:37,055 | INFO     | [data] queue_monitor thread has finished
[2026-03-08 04:11:36] 2026-03-08 03:11:01,526 | INFO     | PID=8706 has CPU usage=0.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2026-03-08 04:11:36] 2026-03-08 03:11:01,526 | INFO     | .. there are 2 such processes running
[2026-03-08 04:11:36] 2026-03-08 03:11:01,527 | INFO     | found 0 job(s) in 20 queues
[2026-03-08 04:11:36] 2026-03-08 03:11:01,527 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-08 04:11:36] 2026-03-08 03:11:01,532 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-08 04:11:36] 2026-03-08 03:11:25,069 | INFO     | [monitor] cgroup control has ended
[2026-03-08 04:11:36] 2026-03-08 03:11:25,605 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139672614172480)>', '<ExcThread(monitor, started 139672151889664)>']
[2026-03-08 04:11:36] 2026-03-08 03:11:25,677 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-08 04:11:36] 2026-03-08 03:11:25,677 | INFO     | [monitor] control thread has ended
[2026-03-08 04:11:36] 2026-03-08 03:11:30,631 | INFO     | all workflow threads have been joined
[2026-03-08 04:11:36] 2026-03-08 03:11:30,631 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-08 04:11:36] 2026-03-08 03:11:30,632 | INFO     | traces error code: 0
[2026-03-08 04:11:36] 2026-03-08 03:11:30,632 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-08 04:11:36] 2026-03-08 03:11:31,125 [wrapper] ==== pilot stdout END ====
[2026-03-08 04:11:36] 2026-03-08 03:11:31,222 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-08 04:11:36] 2026-03-08 03:11:31,329 [wrapper] pilotpid: 8706
[2026-03-08 04:11:36] 2026-03-08 03:11:31,417 [wrapper] Pilot exit status: 0
[2026-03-08 04:11:36] 2026-03-08 03:11:31,943 [wrapper] pandaids: 7038975788
[2026-03-08 04:11:36] 2026-03-08 03:11:33,042 [wrapper] cleanup supervisor_pilot 19219 8707
[2026-03-08 04:11:36] 2026-03-08 03:11:33,157 [wrapper] Test setup, not cleaning
[2026-03-08 04:11:36] 2026-03-08 03:11:33,283 [wrapper] apfmon messages muted
[2026-03-08 04:11:36] 2026-03-08 03:11:33,374 [wrapper] ==== wrapper stdout END ====
[2026-03-08 04:11:36] 2026-03-08 03:11:33,490 [wrapper] ==== wrapper stderr END ====
[2026-03-08 04:11:36]  *** Error codes and diagnostics ***
[2026-03-08 04:11:37]     "exeErrorCode": 0,
[2026-03-08 04:11:37]     "exeErrorDiag": "",
[2026-03-08 04:11:37]     "pilotErrorCode": 0,
[2026-03-08 04:11:37]     "pilotErrorDiag": "",
[2026-03-08 04:11:37]  *** Listing of results directory ***
[2026-03-08 04:11:37] total 619684
[2026-03-08 04:11:37] -rw-r--r--. 1 boinc boinc    584627 Mar  6 04:41 pilot3.tar.gz
[2026-03-08 04:11:37] -rw-r--r--. 1 boinc boinc      5111 Mar  6 04:46 queuedata.json
[2026-03-08 04:11:37] -rwx------. 1 boinc boinc     36322 Mar  6 04:46 runpilot2-wrapper.sh
[2026-03-08 04:11:37] -rw-r--r--. 1 boinc boinc       100 Mar  8 00:28 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-08 04:11:37] -rwxr-xr-x. 1 boinc boinc      7986 Mar  8 00:28 run_atlas
[2026-03-08 04:11:37] -rw-r--r--. 1 boinc boinc       105 Mar  8 00:28 job.xml
[2026-03-08 04:11:37] -rw-r--r--. 2 boinc boinc    597955 Mar  8 00:28 input.tar.gz
[2026-03-08 04:11:37] -rw-r--r--. 1 boinc boinc      6390 Mar  8 00:28 init_data.xml
[2026-03-08 04:11:37] -rw-r--r--. 2 boinc boinc 441231813 Mar  8 00:28 EVNT.46701403._001168.pool.root.1
[2026-03-08 04:11:37] -rw-r--r--. 2 boinc boinc     15845 Mar  8 00:28 start_atlas.sh
[2026-03-08 04:11:37] drwxrwx--x. 2 boinc boinc        68 Mar  8 00:28 shared
[2026-03-08 04:11:37] -rw-r--r--. 1 boinc boinc         0 Mar  8 00:28 boinc_lockfile
[2026-03-08 04:11:37] -rw-r--r--. 1 boinc boinc      2561 Mar  8 00:29 pandaJob.out
[2026-03-08 04:11:37] -rw-------. 1 boinc boinc       413 Mar  8 00:35 workernode_map.json
[2026-03-08 04:11:37] -rw-------. 1 boinc boinc    999177 Mar  8 00:35 agis_schedconf.cvmfs.json
[2026-03-08 04:11:37] drwx------. 5 boinc boinc      4096 Mar  8 00:35 pilot3
[2026-03-08 04:11:37] -rw-------. 1 boinc boinc 184808153 Mar  8 04:08 HITS.48955010._008392.pool.root.1
[2026-03-08 04:11:37] -rw-r--r--. 1 boinc boinc       531 Mar  8 04:09 boinc_task_state.xml
[2026-03-08 04:11:37] -rw-------. 1 boinc boinc      1024 Mar  8 04:10 memory_monitor_summary.json
[2026-03-08 04:11:37] -rw-------. 1 boinc boinc        95 Mar  8 04:10 pilot_heartbeat.json
[2026-03-08 04:11:37] -rw-------. 1 boinc boinc   1521291 Mar  8 04:10 agis_ddmendpoints.agis.ALL.json
[2026-03-08 04:11:37] -rw-------. 1 boinc boinc    474905 Mar  8 04:10 log.48955010._008392.job.log.tgz.1
[2026-03-08 04:11:37] -rw-------. 1 boinc boinc      6314 Mar  8 04:10 heartbeat.json
[2026-03-08 04:11:37] -rw-r--r--. 1 boinc boinc      8192 Mar  8 04:11 boinc_mmap_file
[2026-03-08 04:11:37] -rw-r--r--. 1 boinc boinc        28 Mar  8 04:11 wrapper_checkpoint.txt
[2026-03-08 04:11:37] -rw-------. 1 boinc boinc      4879 Mar  8 04:11 pilotlog.txt
[2026-03-08 04:11:37] -rw-------. 1 boinc boinc   1824036 Mar  8 04:11 log.48955010._008392.job.log.1
[2026-03-08 04:11:37] -rw-------. 1 boinc boinc       357 Mar  8 04:11 output.list
[2026-03-08 04:11:37] -rw-r--r--. 1 boinc boinc       620 Mar  8 04:11 runtime_log
[2026-03-08 04:11:37] -rw-------. 1 boinc boinc   2314240 Mar  8 04:11 result.tar.gz
[2026-03-08 04:11:37] -rw-r--r--. 1 boinc boinc      8816 Mar  8 04:11 runtime_log.err
[2026-03-08 04:11:37] -rw-------. 1 boinc boinc       654 Mar  8 04:11 3sHMDm0JbI9n9Rq4apOajLDm4fhM0noT9bVooX4SDm51NLDmrSVDXn.diag
[2026-03-08 04:11:37] -rw-r--r--. 1 boinc boinc     20799 Mar  8 04:11 stderr.txt
[2026-03-08 04:11:37] HITS file was successfully produced:
[2026-03-08 04:11:37] -rw-------. 1 boinc boinc 184808153 Mar  8 04:08 shared/HITS.pool.root.1
[2026-03-08 04:11:37]  *** Contents of shared directory: ***
[2026-03-08 04:11:37] total 614232
[2026-03-08 04:11:37] -rw-r--r--. 2 boinc boinc    597955 Mar  8 00:28 input.tar.gz
[2026-03-08 04:11:37] -rw-r--r--. 2 boinc boinc 441231813 Mar  8 00:28 ATLAS.root_0
[2026-03-08 04:11:37] -rw-r--r--. 2 boinc boinc     15845 Mar  8 00:28 start_atlas.sh
[2026-03-08 04:11:37] -rw-------. 1 boinc boinc 184808153 Mar  8 04:08 HITS.pool.root.1
[2026-03-08 04:11:37] -rw-------. 1 boinc boinc   2314240 Mar  8 04:11 result.tar.gz
04:11:38 (4742): run_atlas exited; CPU time 47522.284955
04:11:38 (4742): called boinc_finish(0)

</stderr_txt>
]]>

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