Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
14:16:48 (1621301): wrapper (7.7.26015): starting
14:16:48 (1621301): wrapper: running run_atlas (--nthreads 4)
[2026-03-09 14:16:48] Arguments: --nthreads 4
[2026-03-09 14:16:48] Threads: 4
[2026-03-09 14:16:48] Checking for CVMFS
[2026-03-09 14:16:48] No cvmfs_config command found, will try listing directly
[2026-03-09 14:16:48] CVMFS is ok
[2026-03-09 14:16:48] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-09 14:16:48] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-09 14:16:48] Further information can be found at the LHC@home message board.
[2026-03-09 14:16:48] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-09 14:16:48] Checking for apptainer binary...
[2026-03-09 14:16:48] which: no apptainer in ((null))
[2026-03-09 14:16:48] apptainer is not installed, using version from CVMFS
[2026-03-09 14:16:48] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-09 14:16:48] WARNING: Environment variable TMPDIR already has value [/var/lib/boinc/var/slot180/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut28.grid.cesnet.cz
[2026-03-09 14:16:48] apptainer works
[2026-03-09 14:16:48] Set ATHENA_PROC_NUMBER=4
[2026-03-09 14:16:48] Set ATHENA_CORE_NUMBER=4
[2026-03-09 14:16:48] Starting ATLAS job with PandaID=7039073653
[2026-03-09 14:16:48] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc/var/slot180/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-09 15:42:35]  *** The last 200 lines of the pilot log: ***
[2026-03-09 15:42:35] ]
[2026-03-09 15:42:35] 2026-03-09 14:42:00,654 | INFO     | transferring file log.48955010._010333.job.log.tgz.1 from /var/lib/boinc/var/slot180/slots/0/PanDA_Pilot-7039073653/log.48955010._010333.job.log.tgz.1 to /var/lib/
[2026-03-09 15:42:35] 2026-03-09 14:42:00,654 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc/var/slot180/slots/0/PanDA_Pilot-7039073653/log.48955010._010333.job.log.tgz.1 /var/lib/boinc/var/slot180/slots/0/
[2026-03-09 15:42:35] 2026-03-09 14:42:00,687 | INFO     | adding to output.list: log.48955010._010333.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/71/67/log.48955010._010333.job.log.tg
[2026-03-09 15:42:35] 2026-03-09 14:42:00,688 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-03-09 15:42:35] 2026-03-09 14:42:00,688 | INFO     | summary of transferred files:
[2026-03-09 15:42:35] 2026-03-09 14:42:00,688 | INFO     |  -- lfn=log.48955010._010333.job.log.tgz.1, status_code=0, status=transferred
[2026-03-09 15:42:35] 2026-03-09 14:42:00,688 | INFO     | stage-out finished correctly
[2026-03-09 15:42:35] 2026-03-09 14:42:00,745 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-03-09 15:42:35] 2026-03-09 14:42:00,993 | INFO     | time since job start (5100s) is within the limit (349056.0s)
[2026-03-09 15:42:35] 2026-03-09 14:42:02,496 | WARNING  | process 1631682 can no longer be monitored (due to stat problems) - aborting
[2026-03-09 15:42:35] 2026-03-09 14:42:02,496 | INFO     | using path: /var/lib/boinc/var/slot180/slots/0/PanDA_Pilot-7039073653/memory_monitor_summary.json (trf name=prmon)
[2026-03-09 15:42:35] 2026-03-09 14:42:02,497 | INFO     | using path: /var/lib/boinc/var/slot180/slots/0/PanDA_Pilot-7039073653/memory_monitor_summary.json (trf name=prmon)
[2026-03-09 15:42:35] 2026-03-09 14:42:02,497 | WARNING  | memory limits not set in config, using defaults: 'NoneType' object has no attribute 'get'
[2026-03-09 15:42:35] 2026-03-09 14:42:02,497 | WARNING  | maxPSS not found in memory monitor output
[2026-03-09 15:42:35] 2026-03-09 14:42:02,497 | INFO     | payload log (log.EVNTtoHITS) within allowed size limit (2147483648 B): 3042214 B
[2026-03-09 15:42:35] 2026-03-09 14:42:02,497 | INFO     | payload log (payload.stdout) within allowed size limit (2147483648 B): 16100 B
[2026-03-09 15:42:35] 2026-03-09 14:42:02,497 | INFO     | executing command: df -mP /var/lib/boinc/var/slot180/slots/0
[2026-03-09 15:42:35] 2026-03-09 14:42:02,512 | INFO     | sufficient remaining disk space (19925041152 B)
[2026-03-09 15:42:35] 2026-03-09 14:42:02,512 | INFO     | work directory size check will use 5033164800 B as a max limit (20% grace limit added, divider=1)
[2026-03-09 15:42:35] 2026-03-09 14:42:02,513 | INFO     | size of work directory /var/lib/boinc/var/slot180/slots/0/PanDA_Pilot-7039073653: 3344638 B (within 5033164800 B limit)
[2026-03-09 15:42:35] 2026-03-09 14:42:02,513 | INFO     | pfn file=/var/lib/boinc/var/slot180/slots/0/PanDA_Pilot-7039073653/HITS.48955010._010333.pool.root.1 does not exist (skip from workdir size calculation)
[2026-03-09 15:42:35] 2026-03-09 14:42:02,513 | INFO     | total size of present files: 0 B (workdir size: 3344638 B)
[2026-03-09 15:42:35] 2026-03-09 14:42:02,513 | INFO     | output file size check: skipping output file /var/lib/boinc/var/slot180/slots/0/PanDA_Pilot-7039073653/HITS.48955010._010333.pool.root.1 since it does not exist
[2026-03-09 15:42:35] 2026-03-09 14:42:02,663 | INFO     | job 7039073653 has state=finished
[2026-03-09 15:42:35] 2026-03-09 14:42:02,663 | INFO     | preparing for final server update for job 7039073653 in state='finished'
[2026-03-09 15:42:35] 2026-03-09 14:42:02,664 | INFO     | reading metadata from: /var/lib/boinc/var/slot180/slots/0/PanDA_Pilot-7039073653/jobReport.json
[2026-03-09 15:42:35] 2026-03-09 14:42:02,666 | INFO     | added worker_node to metadata from /var/lib/boinc/var/slot180/slots/0/workernode_map.json
[2026-03-09 15:42:35] 2026-03-09 14:42:02,666 | INFO     | this job has now completed (state=finished)
[2026-03-09 15:42:35] 2026-03-09 14:42:02,666 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-03-09 15:42:35] 2026-03-09 14:42:02,666 | INFO     | log transfer has been attempted: DONE
[2026-03-09 15:42:35] 2026-03-09 14:42:02,666 | INFO     | job 7039073653 has finished - writing final server update
[2026-03-09 15:42:35] 2026-03-09 14:42:02,666 | WARNING  | failed to read HTCondor job classAd: [Errno 2] No such file or directory: '/scratch/condor/execute/dir_19292/.job.ad'
[2026-03-09 15:42:35] 2026-03-09 14:42:02,666 | INFO     | total number of processed events: 400 (read)
[2026-03-09 15:42:35] 2026-03-09 14:42:02,687 | INFO     | using path: /var/lib/boinc/var/slot180/slots/0/PanDA_Pilot-7039073653/memory_monitor_summary.json (trf name=prmon)
[2026-03-09 15:42:35] 2026-03-09 14:42:02,688 | INFO     | extracted standard info from prmon json
[2026-03-09 15:42:35] 2026-03-09 14:42:02,688 | INFO     | extracted standard memory fields from prmon json
[2026-03-09 15:42:35] 2026-03-09 14:42:02,688 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-03-09 15:42:35] 2026-03-09 14:42:02,688 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-03-09 15:42:35] 2026-03-09 14:42:02,688 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-03-09 15:42:35] 2026-03-09 14:42:02,690 | INFO     | fitting pss+swap vs Time
[2026-03-09 15:42:35] 2026-03-09 14:42:02,690 | INFO     | sum of square deviations: 141539398.0
[2026-03-09 15:42:35] 2026-03-09 14:42:02,690 | INFO     | sum of deviations: -1150573826.0
[2026-03-09 15:42:35] 2026-03-09 14:42:02,690 | INFO     | mean x: 1773064864.0
[2026-03-09 15:42:35] 2026-03-09 14:42:02,690 | INFO     | mean y: 2340058.6103896103
[2026-03-09 15:42:35] 2026-03-09 14:42:02,690 | INFO     | intersect: 14415585085.402504
[2026-03-09 15:42:35] 2026-03-09 14:42:02,690 | INFO     | chi2: 0.0024473691807527045
[2026-03-09 15:42:35] 2026-03-09 14:42:02,691 | INFO     | current memory leak: -8.13 B/s (using 77 data points, chi2=0.00)
[2026-03-09 15:42:35] 2026-03-09 14:42:02,691 | INFO     | could have reported an average CPU frequency of 3592 MHz (6 samples)
[2026-03-09 15:42:35] 2026-03-09 14:42:02,691 | INFO     | ..............................
[2026-03-09 15:42:35] 2026-03-09 14:42:02,691 | INFO     | . Timing measurements:
[2026-03-09 15:42:35] 2026-03-09 14:42:02,691 | INFO     | . get job = 0 s
[2026-03-09 15:42:35] 2026-03-09 14:42:02,691 | INFO     | . initial setup = 4 s
[2026-03-09 15:42:35] 2026-03-09 14:42:02,691 | INFO     | . payload setup = 5 s
[2026-03-09 15:42:35] 2026-03-09 14:42:02,691 | INFO     | . stage-in = 0 s
[2026-03-09 15:42:35] 2026-03-09 14:42:02,691 | INFO     | . payload execution = 5080 s
[2026-03-09 15:42:35] 2026-03-09 14:42:02,691 | INFO     | . stage-out = 0 s
[2026-03-09 15:42:35] 2026-03-09 14:42:02,691 | INFO     | . log creation = 0 s
[2026-03-09 15:42:35] 2026-03-09 14:42:02,691 | INFO     | ..............................
[2026-03-09 15:42:35] 2026-03-09 14:42:02,786 | INFO     | 
[2026-03-09 15:42:35] 2026-03-09 14:42:02,786 | INFO     | job summary report
[2026-03-09 15:42:35] 2026-03-09 14:42:02,786 | INFO     | --------------------------------------------------
[2026-03-09 15:42:35] 2026-03-09 14:42:02,786 | INFO     | PanDA job id: 7039073653
[2026-03-09 15:42:35] 2026-03-09 14:42:02,786 | INFO     | task id: 48955010
[2026-03-09 15:42:35] 2026-03-09 14:42:02,786 | INFO     | errors: (none)
[2026-03-09 15:42:35] 2026-03-09 14:42:02,786 | INFO     | status: LOG_TRANSFER = DONE 
[2026-03-09 15:42:35] 2026-03-09 14:42:02,786 | INFO     | pilot state: finished 
[2026-03-09 15:42:35] 2026-03-09 14:42:02,786 | INFO     | transexitcode: 0
[2026-03-09 15:42:35] 2026-03-09 14:42:02,786 | INFO     | exeerrorcode: 0
[2026-03-09 15:42:35] 2026-03-09 14:42:02,786 | INFO     | exeerrordiag: 
[2026-03-09 15:42:35] 2026-03-09 14:42:02,786 | INFO     | exitcode: 0
[2026-03-09 15:42:35] 2026-03-09 14:42:02,786 | INFO     | exitmsg: OK
[2026-03-09 15:42:35] 2026-03-09 14:42:02,787 | INFO     | cpuconsumptiontime: 19248 s
[2026-03-09 15:42:35] 2026-03-09 14:42:02,787 | INFO     | nevents: 400
[2026-03-09 15:42:35] 2026-03-09 14:42:02,787 | INFO     | neventsw: 0
[2026-03-09 15:42:35] 2026-03-09 14:42:02,787 | INFO     | pid: 1631682
[2026-03-09 15:42:35] 2026-03-09 14:42:02,787 | INFO     | pgrp: 1631682
[2026-03-09 15:42:35] 2026-03-09 14:42:02,787 | INFO     | corecount: 4
[2026-03-09 15:42:35] 2026-03-09 14:42:02,787 | INFO     | event service: False
[2026-03-09 15:42:35] 2026-03-09 14:42:02,787 | INFO     | sizes: {0: 2279758, 1: 2280219, 11: 2280219, 5089: 2315695, 5090: 2315695, 5092: 2315917}
[2026-03-09 15:42:35] 2026-03-09 14:42:02,787 | INFO     | --------------------------------------------------
[2026-03-09 15:42:35] 2026-03-09 14:42:02,787 | INFO     | 
[2026-03-09 15:42:35] 2026-03-09 14:42:02,787 | INFO     | executing command: ls -lF /var/lib/boinc/var/slot180/slots/0
[2026-03-09 15:42:35] 2026-03-09 14:42:02,839 | INFO     | queue jobs had 0 job(s) [purged]
[2026-03-09 15:42:35] 2026-03-09 14:42:02,839 | INFO     | queue payloads had 0 job(s) [purged]
[2026-03-09 15:42:35] 2026-03-09 14:42:02,839 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-09 15:42:35] 2026-03-09 14:42:02,839 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-09 15:42:35] 2026-03-09 14:42:02,839 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-09 15:42:35] 2026-03-09 14:42:02,839 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-09 15:42:35] 2026-03-09 14:42:02,839 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-09 15:42:35] 2026-03-09 14:42:02,839 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-09 15:42:35] 2026-03-09 14:42:02,839 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-09 15:42:35] 2026-03-09 14:42:02,839 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-09 15:42:35] 2026-03-09 14:42:02,839 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-09 15:42:35] 2026-03-09 14:42:02,839 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-09 15:42:35] 2026-03-09 14:42:02,839 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-09 15:42:35] 2026-03-09 14:42:02,839 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-09 15:42:35] 2026-03-09 14:42:02,839 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-09 15:42:35] 2026-03-09 14:42:02,839 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-09 15:42:35] 2026-03-09 14:42:02,839 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-09 15:42:35] 2026-03-09 14:42:02,840 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-09 15:42:35] 2026-03-09 14:42:02,840 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-09 15:42:35] 2026-03-09 14:42:02,840 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-09 15:42:35] 2026-03-09 14:42:02,840 | INFO     | job 7039073653 has completed (purged errors)
[2026-03-09 15:42:35] 2026-03-09 14:42:02,840 | INFO     | overall cleanup function is called
[2026-03-09 15:42:35] 2026-03-09 14:42:03,127 | INFO     | number of running child processes to parent process 1631682: 1
[2026-03-09 15:42:35] 2026-03-09 14:42:03,127 | INFO     | maximum number of monitored processes: 6
[2026-03-09 15:42:35] 2026-03-09 14:42:03,127 | INFO     | aborting job monitoring since job object (job id=7039073653) has expired
[2026-03-09 15:42:35] 2026-03-09 14:42:03,847 | INFO     | --- collectZombieJob: --- 10, [1631682]
[2026-03-09 15:42:35] 2026-03-09 14:42:03,847 | INFO     | zombie collector waiting for pid 1631682
[2026-03-09 15:42:35] 2026-03-09 14:42:03,847 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-09 15:42:35] 2026-03-09 14:42:03,847 | INFO     | collected zombie processes
[2026-03-09 15:42:35] 2026-03-09 14:42:03,847 | INFO     | will attempt to kill all subprocesses of pid=1631682
[2026-03-09 15:42:35] 2026-03-09 14:42:04,370 | INFO     | process IDs to be killed: [1631682] (in reverse order)
[2026-03-09 15:42:35] 2026-03-09 14:42:04,619 | WARNING  | found no corresponding commands to process id(s)
[2026-03-09 15:42:35] 2026-03-09 14:42:04,620 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-09 15:42:35] 2026-03-09 14:42:04,650 | INFO     | did not find any defunct processes belonging to 1631682
[2026-03-09 15:42:35] 2026-03-09 14:42:04,682 | INFO     | did not find any defunct processes belonging to 1631682
[2026-03-09 15:42:35] 2026-03-09 14:42:04,683 | INFO     | ready for new job
[2026-03-09 15:42:35] 2026-03-09 14:42:04,683 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-09 15:42:35] 2026-03-09 14:42:04,684 | INFO     | **************************************
[2026-03-09 15:42:35] 2026-03-09 14:42:04,684 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-03-09 15:42:35] 2026-03-09 14:42:04,684 | INFO     | **************************************
[2026-03-09 15:42:35] 2026-03-09 14:42:04,684 | INFO     | 
[2026-03-09 15:42:35] 2026-03-09 14:42:04,690 | INFO     | architecture information:
[2026-03-09 15:42:35] 2026-03-09 14:42:04,693 | INFO     | executing command: cat /etc/os-release
[2026-03-09 15:42:35] 2026-03-09 14:42:04,711 | INFO     | cat /etc/os-release:
[2026-03-09 15:42:35] NAME="CentOS Linux"
[2026-03-09 15:42:35] VERSION="7 (Core)"
[2026-03-09 15:42:35] ID="centos"
[2026-03-09 15:42:35] ID_LIKE="rhel fedora"
[2026-03-09 15:42:35] VERSION_ID="7"
[2026-03-09 15:42:35] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-09 15:42:35] ANSI_COLOR="0;31"
[2026-03-09 15:42:35] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-09 15:42:35] HOME_URL="https://www.centos.org/"
[2026-03-09 15:42:35] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-09 15:42:35] 
[2026-03-09 15:42:35] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-09 15:42:35] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-09 15:42:35] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-09 15:42:35] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-09 15:42:35] 
[2026-03-09 15:42:35] 2026-03-09 14:42:04,712 | INFO     | **************************************
[2026-03-09 15:42:35] 2026-03-09 14:42:05,214 | INFO     | executing command: df -mP /var/lib/boinc/var/slot180/slots/0
[2026-03-09 15:42:35] 2026-03-09 14:42:05,230 | INFO     | sufficient remaining disk space (19926089728 B)
[2026-03-09 15:42:35] 2026-03-09 14:42:05,230 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-09 15:42:35] 2026-03-09 14:42:05,230 | INFO     | current server update state: UPDATING_FINAL
[2026-03-09 15:42:35] 2026-03-09 14:42:05,230 | INFO     | update_server=False
[2026-03-09 15:42:35] 2026-03-09 14:42:05,230 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-09 15:42:35] 2026-03-09 14:42:05,609 | INFO     | all job control threads have been joined
[2026-03-09 15:42:35] 2026-03-09 14:42:05,630 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-03-09 15:42:35] 2026-03-09 14:42:05,630 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-03-09 15:42:35] 2026-03-09 14:42:05,630 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-09 15:42:35] 2026-03-09 14:42:05,630 | INFO     | will abort loop
[2026-03-09 15:42:35] 2026-03-09 14:42:06,054 | INFO     | all data control threads have been joined
[2026-03-09 15:42:35] 2026-03-09 14:42:06,211 | INFO     | all payload control threads have been joined
[2026-03-09 15:42:35] 2026-03-09 14:42:06,235 | INFO     | [job] retrieve thread has finished
[2026-03-09 15:42:35] 2026-03-09 14:42:06,253 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-09 15:42:35] 2026-03-09 14:42:06,614 | INFO     | [job] control thread has finished
[2026-03-09 15:42:35] 2026-03-09 14:42:06,635 | INFO     | [job] job monitor thread has finished
[2026-03-09 15:42:35] 2026-03-09 14:42:06,792 | INFO     | [job] create_data_payload thread has finished
[2026-03-09 15:42:35] 2026-03-09 14:42:06,799 | INFO     | [payload] validate_pre thread has finished
[2026-03-09 15:42:35] 2026-03-09 14:42:06,801 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-09 15:42:35] 2026-03-09 14:42:06,812 | INFO     | [job] validate thread has finished
[2026-03-09 15:42:35] 2026-03-09 14:42:07,059 | INFO     | [data] control thread has finished
[2026-03-09 15:42:35] 2026-03-09 14:42:07,137 | INFO     | [payload] execute_payloads thread has finished
[2026-03-09 15:42:35] 2026-03-09 14:42:07,216 | INFO     | [payload] control thread has finished
[2026-03-09 15:42:35] 2026-03-09 14:42:07,301 | INFO     | [data] copytool_in thread has finished
[2026-03-09 15:42:35] 2026-03-09 14:42:07,596 | INFO     | [payload] validate_post thread has finished
[2026-03-09 15:42:35] 2026-03-09 14:42:07,773 | INFO     | [payload] failed_post thread has finished
[2026-03-09 15:42:35] 2026-03-09 14:42:07,795 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-09 15:42:35] 2026-03-09 14:42:08,258 | INFO     | [data] copytool_out thread has finished
[2026-03-09 15:42:35] 2026-03-09 14:42:08,489 | INFO     | [monitor] cgroup control has ended
[2026-03-09 15:42:35] 2026-03-09 14:42:08,800 | INFO     | [job] queue monitor thread has finished
[2026-03-09 15:42:35] 2026-03-09 14:42:10,807 | INFO     | [data] queue_monitor thread has finished
[2026-03-09 15:42:35] 2026-03-09 14:42:15,471 | INFO     | job.realtimelogging is not enabled
[2026-03-09 15:42:35] 2026-03-09 14:42:16,476 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-09 15:42:35] 2026-03-09 14:42:18,403 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23050649683776)>', '<ExcThread(monitor, started 23050328164096)>']
[2026-03-09 15:42:35] 2026-03-09 14:42:23,428 | INFO     | all workflow threads have been joined
[2026-03-09 15:42:35] 2026-03-09 14:42:23,428 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-09 15:42:35] 2026-03-09 14:42:23,428 | INFO     | traces error code: 0
[2026-03-09 15:42:35] 2026-03-09 14:42:23,428 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-09 15:42:35] 2026-03-09 14:42:34,705 | INFO     | PID=1625853 has CPU usage=7.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-03-09 15:42:35] 2026-03-09 14:42:34,705 | INFO     | .. there are 58 such processes running
[2026-03-09 15:42:35] 2026-03-09 14:42:34,706 | INFO     | found 0 job(s) in 20 queues
[2026-03-09 15:42:35] 2026-03-09 14:42:34,706 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-09 15:42:35] 2026-03-09 14:42:34,706 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-09 15:42:35] 2026-03-09 14:42:34,706 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-09 15:42:35] 2026-03-09 14:42:34,706 | INFO     | [monitor] control thread has ended
[2026-03-09 15:42:35] 2026-03-09 14:42:34,833 [wrapper] ==== pilot stdout END ====
[2026-03-09 15:42:35] 2026-03-09 14:42:34,838 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-09 15:42:35] 2026-03-09 14:42:34,840 [wrapper] pilotpid: 1625853
[2026-03-09 15:42:35] 2026-03-09 14:42:34,842 [wrapper] Pilot exit status: 0
[2026-03-09 15:42:35] 2026-03-09 14:42:34,927 [wrapper] pandaids: 7039073653
[2026-03-09 15:42:35] 2026-03-09 14:42:35,051 [wrapper] cleanup supervisor_pilot 2528523 1625854
[2026-03-09 15:42:35] 2026-03-09 14:42:35,055 [wrapper] Test setup, not cleaning
[2026-03-09 15:42:35] 2026-03-09 14:42:35,058 [wrapper] apfmon messages muted
[2026-03-09 15:42:35] 2026-03-09 14:42:35,061 [wrapper] ==== wrapper stdout END ====
[2026-03-09 15:42:35] 2026-03-09 14:42:35,091 [wrapper] ==== wrapper stderr END ====
[2026-03-09 15:42:35]  *** Error codes and diagnostics ***
[2026-03-09 15:42:35]     "exeErrorCode": 0,
[2026-03-09 15:42:35]     "exeErrorDiag": "",
[2026-03-09 15:42:35]     "pilotErrorCode": 0,
[2026-03-09 15:42:35]     "pilotErrorDiag": "",
[2026-03-09 15:42:35]  *** Listing of results directory ***
[2026-03-09 15:42:35] total 633656
[2026-03-09 15:42:35] -rw-r--r--. 1 boinc boinc    584627 Mar  7 10:08 pilot3.tar.gz
[2026-03-09 15:42:35] -rw-r--r--. 1 boinc boinc      5111 Mar  7 10:44 queuedata.json
[2026-03-09 15:42:35] -rwx------. 1 boinc boinc     36322 Mar  7 10:44 runpilot2-wrapper.sh
[2026-03-09 15:42:35] -rw-r--r--. 1 boinc boinc       100 Mar  9 14:16 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-09 15:42:35] -rwxr-xr-x. 1 boinc boinc      7986 Mar  9 14:16 run_atlas
[2026-03-09 15:42:35] -rw-r--r--. 1 boinc boinc       105 Mar  9 14:16 job.xml
[2026-03-09 15:42:35] -rw-r--r--. 2 boinc boinc     15845 Mar  9 14:16 start_atlas.sh
[2026-03-09 15:42:35] drwxrwx--x. 2 boinc boinc      4096 Mar  9 14:16 shared
[2026-03-09 15:42:35] -rw-r--r--. 2 boinc boinc    597954 Mar  9 14:16 input.tar.gz
[2026-03-09 15:42:35] -rw-r--r--. 1 boinc boinc      6707 Mar  9 14:16 init_data.xml
[2026-03-09 15:42:35] -rw-r--r--. 2 boinc boinc 448306433 Mar  9 14:16 EVNT.46701403._001207.pool.root.1
[2026-03-09 15:42:35] -rw-r--r--. 1 boinc boinc         0 Mar  9 14:16 boinc_lockfile
[2026-03-09 15:42:35] -rw-r--r--. 1 boinc boinc      2563 Mar  9 14:16 pandaJob.out
[2026-03-09 15:42:35] -rw-------. 1 boinc boinc    990728 Mar  9 14:16 agis_schedconf.cvmfs.json
[2026-03-09 15:42:35] -rw-------. 1 boinc boinc   1511578 Mar  9 14:16 agis_ddmendpoints.agis.ALL.json
[2026-03-09 15:42:35] -rw-------. 1 boinc boinc       445 Mar  9 14:16 workernode_map.json
[2026-03-09 15:42:35] drwx------. 5 boinc boinc      4096 Mar  9 14:17 pilot3
[2026-03-09 15:42:35] -rw-------. 1 boinc boinc 194560688 Mar  9 15:41 HITS.48955010._010333.pool.root.1
[2026-03-09 15:42:35] -rw-r--r--. 1 boinc boinc       530 Mar  9 15:41 boinc_task_state.xml
[2026-03-09 15:42:35] -rw-------. 1 boinc boinc      1044 Mar  9 15:41 memory_monitor_summary.json
[2026-03-09 15:42:35] -rw-------. 1 boinc boinc    290939 Mar  9 15:42 log.48955010._010333.job.log.tgz.1
[2026-03-09 15:42:35] -rw-------. 1 boinc boinc      6361 Mar  9 15:42 heartbeat.json
[2026-03-09 15:42:35] -rw-r--r--. 1 boinc boinc        27 Mar  9 15:42 wrapper_checkpoint.txt
[2026-03-09 15:42:35] -rw-r--r--. 1 boinc boinc      8192 Mar  9 15:42 boinc_mmap_file
[2026-03-09 15:42:35] -rw-------. 1 boinc boinc        95 Mar  9 15:42 pilot_heartbeat.json
[2026-03-09 15:42:35] -rw-------. 1 boinc boinc       823 Mar  9 15:42 pilotlog.txt
[2026-03-09 15:42:35] -rw-------. 1 boinc boinc    745705 Mar  9 15:42 log.48955010._010333.job.log.1
[2026-03-09 15:42:35] -rw-------. 1 boinc boinc       357 Mar  9 15:42 output.list
[2026-03-09 15:42:35] -rw-r--r--. 1 boinc boinc       620 Mar  9 15:42 runtime_log
[2026-03-09 15:42:35] -rw-------. 1 boinc boinc   1054720 Mar  9 15:42 result.tar.gz
[2026-03-09 15:42:35] -rw-r--r--. 1 boinc boinc      9221 Mar  9 15:42 runtime_log.err
[2026-03-09 15:42:35] -rw-------. 1 boinc boinc       663 Mar  9 15:42 UcwKDmJO3I9nsSi4ap6QjLDmwznN0nGgGQJmIVkRDmWUVLDm9GcZXo.diag
[2026-03-09 15:42:35] -rw-r--r--. 1 boinc boinc     22578 Mar  9 15:42 stderr.txt
[2026-03-09 15:42:35] HITS file was successfully produced:
[2026-03-09 15:42:35] -rw-------. 1 boinc boinc 194560688 Mar  9 15:41 shared/HITS.pool.root.1
[2026-03-09 15:42:35]  *** Contents of shared directory: ***
[2026-03-09 15:42:35] total 629444
[2026-03-09 15:42:35] -rw-r--r--. 2 boinc boinc     15845 Mar  9 14:16 start_atlas.sh
[2026-03-09 15:42:35] -rw-r--r--. 2 boinc boinc    597954 Mar  9 14:16 input.tar.gz
[2026-03-09 15:42:35] -rw-r--r--. 2 boinc boinc 448306433 Mar  9 14:16 ATLAS.root_0
[2026-03-09 15:42:35] -rw-------. 1 boinc boinc 194560688 Mar  9 15:41 HITS.pool.root.1
[2026-03-09 15:42:35] -rw-------. 1 boinc boinc   1054720 Mar  9 15:42 result.tar.gz
15:42:36 (1621301): run_atlas exited; CPU time 19462.637128
15:42:36 (1621301): called boinc_finish(0)

</stderr_txt>
]]>

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