Stderr output

<core_client_version>7.20.5</core_client_version>
<![CDATA[
<stderr_txt>
15:44:31 (3792475): wrapper (7.7.26015): starting
15:44:31 (3792475): wrapper: running run_atlas (--nthreads 5)
[2026-03-07 15:44:31] Arguments: --nthreads 5
[2026-03-07 15:44:31] Threads: 5
[2026-03-07 15:44:31] Checking for CVMFS
[2026-03-07 15:44:31] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-07 15:44:32] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-07 15:44:32] Running cvmfs_config stat atlas.cern.ch
[2026-03-07 15:44:32] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-07 15:44:32] 2.13.1.0 2069819 8580 61264 157003 2 50 3246196 4096001 0 130560 0 5119494 99.988 313072 985 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
[2026-03-07 15:44:32] CVMFS is ok
[2026-03-07 15:44:32] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-07 15:44:32] Small home clusters do not require a local http proxy but it is suggested if
[2026-03-07 15:44:32] more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
[2026-03-07 15:44:32] Further information can be found at the LHC@home message board.
[2026-03-07 15:44:32] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-07 15:44:32] Checking for apptainer binary...
[2026-03-07 15:44:32] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-07 15:44:32] Running /usr/bin/apptainer --version
[2026-03-07 15:44:32] apptainer version 1.2.3
[2026-03-07 15:44:32] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-07 15:44:32] Ryzen-7-7700-Zen4-Deb12
[2026-03-07 15:44:32] apptainer works
[2026-03-07 15:44:32] Set ATHENA_PROC_NUMBER=5
[2026-03-07 15:44:32] Set ATHENA_CORE_NUMBER=5
[2026-03-07 15:44:32] Starting ATLAS job with PandaID=7044770287
[2026-03-07 15:44:32] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc-client/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-07 16:51:58]  *** The last 200 lines of the pilot log: ***
[2026-03-07 16:51:58]  is_altstaged=None
[2026-03-07 16:51:58]  is_tar=False
[2026-03-07 16:51:58]  lfn=log.48958577._002405.job.log.tgz.1
[2026-03-07 16:51:58]  mtime=0
[2026-03-07 16:51:58]  protocol_id=None
[2026-03-07 16:51:58]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2026-03-07 16:51:58]  replicas=None
[2026-03-07 16:51:58]  scope=mc23_13p6TeV
[2026-03-07 16:51:58]  status=None
[2026-03-07 16:51:58]  status_code=0
[2026-03-07 16:51:58]  storage_token=
[2026-03-07 16:51:58]  surl=/var/lib/boinc-client/slots/1/PanDA_Pilot-7044770287/log.48958577._002405.job.log.tgz.1
[2026-03-07 16:51:58]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/a9/8e/log.48958577._002405.job.log.tgz.1
[2026-03-07 16:51:58]  workdir=None
[2026-03-07 16:51:58] ]
[2026-03-07 16:51:58] 2026-03-07 15:51:01,900 | INFO     | transferring file log.48958577._002405.job.log.tgz.1 from /var/lib/boinc-client/slots/1/PanDA_Pilot-7044770287/log.48958577._002405.job.log.tgz.1 to /var/lib/boinc
[2026-03-07 16:51:58] 2026-03-07 15:51:01,900 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc-client/slots/1/PanDA_Pilot-7044770287/log.48958577._002405.job.log.tgz.1 /var/lib/boinc-client/slots/1/log.489585
[2026-03-07 16:51:58] 2026-03-07 15:51:01,939 | INFO     | adding to output.list: log.48958577._002405.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/a9/8e/log.48958577._002405.job.log.tg
[2026-03-07 16:51:58] 2026-03-07 15:51:01,940 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-03-07 16:51:58] 2026-03-07 15:51:01,940 | INFO     | summary of transferred files:
[2026-03-07 16:51:58] 2026-03-07 15:51:01,940 | INFO     |  -- lfn=log.48958577._002405.job.log.tgz.1, status_code=0, status=transferred
[2026-03-07 16:51:58] 2026-03-07 15:51:01,940 | INFO     | stage-out finished correctly
[2026-03-07 16:51:58] 2026-03-07 15:51:02,645 | INFO     | monitor loop #308: job 0:7044770287 is in state 'finished'
[2026-03-07 16:51:58] 2026-03-07 15:51:02,645 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-03-07 16:51:58] 2026-03-07 15:51:03,795 | INFO     | time since job start (3977s) is within the limit (349056.0s)
[2026-03-07 16:51:58] 2026-03-07 15:51:04,624 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-03-07 16:51:58] 2026-03-07 15:51:04,833 | INFO     | PID=3796568 has CPU usage=3.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-03-07 16:51:58] 2026-03-07 15:51:05,150 | INFO     | monitor loop #309: job 0:7044770287 is in state 'finished'
[2026-03-07 16:51:58] 2026-03-07 15:51:05,150 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-03-07 16:51:58] 2026-03-07 15:51:05,535 | INFO     | job 7044770287 has state=finished
[2026-03-07 16:51:58] 2026-03-07 15:51:05,535 | INFO     | preparing for final server update for job 7044770287 in state='finished'
[2026-03-07 16:51:58] 2026-03-07 15:51:05,535 | INFO     | reading metadata from: /var/lib/boinc-client/slots/1/PanDA_Pilot-7044770287/jobReport.json
[2026-03-07 16:51:58] 2026-03-07 15:51:05,540 | INFO     | added worker_node to metadata from /var/lib/boinc-client/slots/1/workernode_map.json
[2026-03-07 16:51:58] 2026-03-07 15:51:05,540 | INFO     | this job has now completed (state=finished)
[2026-03-07 16:51:58] 2026-03-07 15:51:05,540 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-03-07 16:51:58] 2026-03-07 15:51:05,540 | INFO     | log transfer has been attempted: DONE
[2026-03-07 16:51:58] 2026-03-07 15:51:05,540 | INFO     | job 7044770287 has finished - writing final server update
[2026-03-07 16:51:58] 2026-03-07 15:51:05,541 | INFO     | total number of processed events: 400 (read)
[2026-03-07 16:51:58] 2026-03-07 15:51:05,542 | INFO     | using path: /var/lib/boinc-client/slots/1/PanDA_Pilot-7044770287/memory_monitor_summary.json (trf name=prmon)
[2026-03-07 16:51:58] 2026-03-07 15:51:05,542 | INFO     | extracted standard info from prmon json
[2026-03-07 16:51:58] 2026-03-07 15:51:05,542 | INFO     | extracted standard memory fields from prmon json
[2026-03-07 16:51:58] 2026-03-07 15:51:05,542 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-03-07 16:51:58] 2026-03-07 15:51:05,543 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-03-07 16:51:58] 2026-03-07 15:51:05,543 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-03-07 16:51:58] 2026-03-07 15:51:05,543 | INFO     | fitting pss+swap vs Time
[2026-03-07 16:51:58] 2026-03-07 15:51:05,543 | INFO     | sum of square deviations: 60482994.5
[2026-03-07 16:51:58] 2026-03-07 15:51:05,543 | INFO     | sum of deviations: -8461554244.0
[2026-03-07 16:51:58] 2026-03-07 15:51:05,543 | INFO     | mean x: 1772896746.5
[2026-03-07 16:51:58] 2026-03-07 15:51:05,543 | INFO     | mean y: 2571485.5862068967
[2026-03-07 16:51:58] 2026-03-07 15:51:05,544 | INFO     | intersect: 248030337199.48233
[2026-03-07 16:51:58] 2026-03-07 15:51:05,544 | INFO     | chi2: 0.1191908969271211
[2026-03-07 16:51:58] 2026-03-07 15:51:05,544 | INFO     | current memory leak: -139.90 B/s (using 58 data points, chi2=0.12)
[2026-03-07 16:51:58] 2026-03-07 15:51:05,544 | INFO     | could have reported an average CPU frequency of 4646 MHz (6 samples)
[2026-03-07 16:51:58] 2026-03-07 15:51:05,544 | INFO     | ..............................
[2026-03-07 16:51:58] 2026-03-07 15:51:05,544 | INFO     | . Timing measurements:
[2026-03-07 16:51:58] 2026-03-07 15:51:05,544 | INFO     | . get job = 0 s
[2026-03-07 16:51:58] 2026-03-07 15:51:05,544 | INFO     | . initial setup = 4 s
[2026-03-07 16:51:58] 2026-03-07 15:51:05,544 | INFO     | . payload setup = 3 s
[2026-03-07 16:51:58] 2026-03-07 15:51:05,544 | INFO     | . stage-in = 0 s
[2026-03-07 16:51:58] 2026-03-07 15:51:05,544 | INFO     | . payload execution = 3957 s
[2026-03-07 16:51:58] 2026-03-07 15:51:05,544 | INFO     | . stage-out = 0 s
[2026-03-07 16:51:58] 2026-03-07 15:51:05,544 | INFO     | . log creation = 0 s
[2026-03-07 16:51:58] 2026-03-07 15:51:05,544 | INFO     | ..............................
[2026-03-07 16:51:58] 2026-03-07 15:51:05,597 | INFO     | 
[2026-03-07 16:51:58] 2026-03-07 15:51:05,597 | INFO     | job summary report
[2026-03-07 16:51:58] 2026-03-07 15:51:05,597 | INFO     | --------------------------------------------------
[2026-03-07 16:51:58] 2026-03-07 15:51:05,597 | INFO     | PanDA job id: 7044770287
[2026-03-07 16:51:58] 2026-03-07 15:51:05,597 | INFO     | task id: 48958577
[2026-03-07 16:51:58] 2026-03-07 15:51:05,597 | INFO     | errors: (none)
[2026-03-07 16:51:58] 2026-03-07 15:51:05,597 | INFO     | status: LOG_TRANSFER = DONE 
[2026-03-07 16:51:58] 2026-03-07 15:51:05,597 | INFO     | pilot state: finished 
[2026-03-07 16:51:58] 2026-03-07 15:51:05,598 | INFO     | transexitcode: 0
[2026-03-07 16:51:58] 2026-03-07 15:51:05,598 | INFO     | exeerrorcode: 0
[2026-03-07 16:51:58] 2026-03-07 15:51:05,598 | INFO     | exeerrordiag: 
[2026-03-07 16:51:58] 2026-03-07 15:51:05,598 | INFO     | exitcode: 0
[2026-03-07 16:51:58] 2026-03-07 15:51:05,598 | INFO     | exitmsg: OK
[2026-03-07 16:51:58] 2026-03-07 15:51:05,598 | INFO     | cpuconsumptiontime: 19061 s
[2026-03-07 16:51:58] 2026-03-07 15:51:05,598 | INFO     | nevents: 400
[2026-03-07 16:51:58] 2026-03-07 15:51:05,598 | INFO     | neventsw: 0
[2026-03-07 16:51:58] 2026-03-07 15:51:05,598 | INFO     | pid: 3801163
[2026-03-07 16:51:58] 2026-03-07 15:51:05,598 | INFO     | pgrp: 3801163
[2026-03-07 16:51:58] 2026-03-07 15:51:05,598 | INFO     | corecount: 5
[2026-03-07 16:51:58] 2026-03-07 15:51:05,598 | INFO     | event service: False
[2026-03-07 16:51:58] 2026-03-07 15:51:05,598 | INFO     | sizes: {0: 2295808, 11: 2295808, 3963: 2321780, 3964: 2321779, 3965: 2330847, 3967: 2330903, 3968: 2331225}
[2026-03-07 16:51:58] 2026-03-07 15:51:05,598 | INFO     | --------------------------------------------------
[2026-03-07 16:51:58] 2026-03-07 15:51:05,598 | INFO     | 
[2026-03-07 16:51:58] 2026-03-07 15:51:05,598 | INFO     | executing command: ls -lF /var/lib/boinc-client/slots/1
[2026-03-07 16:51:58] 2026-03-07 15:51:05,622 | INFO     | queue jobs had 0 job(s) [purged]
[2026-03-07 16:51:58] 2026-03-07 15:51:05,622 | INFO     | queue payloads had 0 job(s) [purged]
[2026-03-07 16:51:58] 2026-03-07 15:51:05,622 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-07 16:51:58] 2026-03-07 15:51:05,622 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-07 16:51:58] 2026-03-07 15:51:05,622 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-07 16:51:58] 2026-03-07 15:51:05,622 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-07 16:51:58] 2026-03-07 15:51:05,622 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-07 16:51:58] 2026-03-07 15:51:05,622 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-07 16:51:58] 2026-03-07 15:51:05,622 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-07 16:51:58] 2026-03-07 15:51:05,622 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-07 16:51:58] 2026-03-07 15:51:05,622 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-07 16:51:58] 2026-03-07 15:51:05,622 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-07 16:51:58] 2026-03-07 15:51:05,622 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-07 16:51:58] 2026-03-07 15:51:05,622 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-07 16:51:58] 2026-03-07 15:51:05,622 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-07 16:51:58] 2026-03-07 15:51:05,622 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-07 16:51:58] 2026-03-07 15:51:05,622 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-07 16:51:58] 2026-03-07 15:51:05,622 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-07 16:51:58] 2026-03-07 15:51:05,622 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-07 16:51:58] 2026-03-07 15:51:05,622 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-07 16:51:58] 2026-03-07 15:51:05,622 | INFO     | job 7044770287 has completed (purged errors)
[2026-03-07 16:51:58] 2026-03-07 15:51:05,622 | INFO     | overall cleanup function is called
[2026-03-07 16:51:58] 2026-03-07 15:51:06,628 | INFO     | --- collectZombieJob: --- 10, [3801163]
[2026-03-07 16:51:58] 2026-03-07 15:51:06,628 | INFO     | zombie collector waiting for pid 3801163
[2026-03-07 16:51:58] 2026-03-07 15:51:06,628 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-07 16:51:58] 2026-03-07 15:51:06,628 | INFO     | collected zombie processes
[2026-03-07 16:51:58] 2026-03-07 15:51:06,628 | INFO     | will attempt to kill all subprocesses of pid=3801163
[2026-03-07 16:51:58] 2026-03-07 15:51:06,653 | INFO     | process IDs to be killed: [3801163] (in reverse order)
[2026-03-07 16:51:58] 2026-03-07 15:51:06,684 | WARNING  | found no corresponding commands to process id(s)
[2026-03-07 16:51:58] 2026-03-07 15:51:06,684 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-07 16:51:58] 2026-03-07 15:51:06,685 | INFO     | did not find any defunct processes belonging to 3801163
[2026-03-07 16:51:58] 2026-03-07 15:51:06,686 | INFO     | did not find any defunct processes belonging to 3801163
[2026-03-07 16:51:58] 2026-03-07 15:51:06,686 | INFO     | ready for new job
[2026-03-07 16:51:58] 2026-03-07 15:51:06,686 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-07 16:51:58] 2026-03-07 15:51:06,687 | INFO     | **************************************
[2026-03-07 16:51:58] 2026-03-07 15:51:06,687 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-03-07 16:51:58] 2026-03-07 15:51:06,687 | INFO     | **************************************
[2026-03-07 16:51:58] 2026-03-07 15:51:06,687 | INFO     | 
[2026-03-07 16:51:58] 2026-03-07 15:51:06,687 | INFO     | architecture information:
[2026-03-07 16:51:58] 2026-03-07 15:51:06,688 | INFO     | executing command: cat /etc/os-release
[2026-03-07 16:51:58] 2026-03-07 15:51:06,703 | INFO     | cat /etc/os-release:
[2026-03-07 16:51:58] NAME="CentOS Linux"
[2026-03-07 16:51:58] VERSION="7 (Core)"
[2026-03-07 16:51:58] ID="centos"
[2026-03-07 16:51:58] ID_LIKE="rhel fedora"
[2026-03-07 16:51:58] VERSION_ID="7"
[2026-03-07 16:51:58] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-07 16:51:58] ANSI_COLOR="0;31"
[2026-03-07 16:51:58] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-07 16:51:58] HOME_URL="https://www.centos.org/"
[2026-03-07 16:51:58] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-07 16:51:58] 
[2026-03-07 16:51:58] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-07 16:51:58] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-07 16:51:58] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-07 16:51:58] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-07 16:51:58] 
[2026-03-07 16:51:58] 2026-03-07 15:51:06,704 | INFO     | **************************************
[2026-03-07 16:51:58] 2026-03-07 15:51:07,206 | INFO     | executing command: df -mP /var/lib/boinc-client/slots/1
[2026-03-07 16:51:58] 2026-03-07 15:51:07,216 | INFO     | sufficient remaining disk space (881244241920 B)
[2026-03-07 16:51:58] 2026-03-07 15:51:07,216 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-07 16:51:58] 2026-03-07 15:51:07,217 | INFO     | current server update state: UPDATING_FINAL
[2026-03-07 16:51:58] 2026-03-07 15:51:07,217 | INFO     | update_server=False
[2026-03-07 16:51:58] 2026-03-07 15:51:07,217 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-07 16:51:58] 2026-03-07 15:51:07,217 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-07 16:51:58] 2026-03-07 15:51:07,339 | INFO     | all job control threads have been joined
[2026-03-07 16:51:58] 2026-03-07 15:51:07,484 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-07 16:51:58] 2026-03-07 15:51:07,651 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-03-07 16:51:58] 2026-03-07 15:51:07,651 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-03-07 16:51:58] 2026-03-07 15:51:07,651 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-07 16:51:58] 2026-03-07 15:51:07,651 | INFO     | will abort loop
[2026-03-07 16:51:58] 2026-03-07 15:51:07,859 | INFO     | all data control threads have been joined
[2026-03-07 16:51:58] 2026-03-07 15:51:08,007 | INFO     | all payload control threads have been joined
[2026-03-07 16:51:58] 2026-03-07 15:51:08,219 | INFO     | [job] queue monitor thread has finished
[2026-03-07 16:51:58] 2026-03-07 15:51:08,219 | INFO     | [job] retrieve thread has finished
[2026-03-07 16:51:58] 2026-03-07 15:51:08,343 | INFO     | [job] control thread has finished
[2026-03-07 16:51:58] 2026-03-07 15:51:08,407 | INFO     | [payload] validate_post thread has finished
[2026-03-07 16:51:58] 2026-03-07 15:51:08,539 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-07 16:51:58] 2026-03-07 15:51:08,655 | INFO     | [job] job monitor thread has finished
[2026-03-07 16:51:58] 2026-03-07 15:51:08,863 | INFO     | [data] control thread has finished
[2026-03-07 16:51:58] 2026-03-07 15:51:08,935 | INFO     | [job] validate thread has finished
[2026-03-07 16:51:58] 2026-03-07 15:51:09,011 | INFO     | [payload] control thread has finished
[2026-03-07 16:51:58] 2026-03-07 15:51:09,011 | INFO     | [job] create_data_payload thread has finished
[2026-03-07 16:51:58] 2026-03-07 15:51:09,135 | INFO     | [payload] execute_payloads thread has finished
[2026-03-07 16:51:58] 2026-03-07 15:51:09,260 | INFO     | [data] copytool_in thread has finished
[2026-03-07 16:51:58] 2026-03-07 15:51:09,272 | INFO     | [payload] validate_pre thread has finished
[2026-03-07 16:51:58] 2026-03-07 15:51:09,487 | INFO     | [data] copytool_out thread has finished
[2026-03-07 16:51:58] 2026-03-07 15:51:09,640 | INFO     | [payload] failed_post thread has finished
[2026-03-07 16:51:58] 2026-03-07 15:51:10,667 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-07 16:51:58] 2026-03-07 15:51:14,671 | INFO     | [data] queue_monitor thread has finished
[2026-03-07 16:51:58] 2026-03-07 15:51:35,918 | INFO     | 3984s have passed since pilot start - server update state is 'UPDATING_FINAL'
[2026-03-07 16:51:58] 2026-03-07 15:51:36,956 | INFO     | PID=3796568 has CPU usage=0.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-03-07 16:51:58] 2026-03-07 15:51:36,956 | INFO     | found 0 job(s) in 20 queues
[2026-03-07 16:51:58] 2026-03-07 15:51:36,956 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-07 16:51:58] 2026-03-07 15:51:36,956 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-07 16:51:58] 2026-03-07 15:51:52,411 | INFO     | [monitor] cgroup control has ended
[2026-03-07 16:51:58] 2026-03-07 15:51:53,415 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140354932234048)>', '<ExcThread(monitor, started 140354221238016)>']
[2026-03-07 16:51:58] 2026-03-07 15:51:54,031 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-07 16:51:58] 2026-03-07 15:51:54,031 | INFO     | [monitor] control thread has ended
[2026-03-07 16:51:58] 2026-03-07 15:51:58,439 | INFO     | all workflow threads have been joined
[2026-03-07 16:51:58] 2026-03-07 15:51:58,459 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-07 16:51:58] 2026-03-07 15:51:58,459 | INFO     | traces error code: 0
[2026-03-07 16:51:58] 2026-03-07 15:51:58,459 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-07 16:51:58] 2026-03-07 15:51:58,550 [wrapper] ==== pilot stdout END ====
[2026-03-07 16:51:58] 2026-03-07 15:51:58,552 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-07 16:51:58] 2026-03-07 15:51:58,553 [wrapper] pilotpid: 3796568
[2026-03-07 16:51:58] 2026-03-07 15:51:58,554 [wrapper] Pilot exit status: 0
[2026-03-07 16:51:58] 2026-03-07 15:51:58,563 [wrapper] pandaids: 7044770287
[2026-03-07 16:51:58] 2026-03-07 15:51:58,575 [wrapper] cleanup supervisor_pilot 3806777 3796569
[2026-03-07 16:51:58] 2026-03-07 15:51:58,576 [wrapper] Test setup, not cleaning
[2026-03-07 16:51:58] 2026-03-07 15:51:58,577 [wrapper] apfmon messages muted
[2026-03-07 16:51:58] 2026-03-07 15:51:58,583 [wrapper] ==== wrapper stdout END ====
[2026-03-07 16:51:58] 2026-03-07 15:51:58,584 [wrapper] ==== wrapper stderr END ====
[2026-03-07 16:51:58]  *** Error codes and diagnostics ***
[2026-03-07 16:51:58]     "exeErrorCode": 0,
[2026-03-07 16:51:58]     "exeErrorDiag": "",
[2026-03-07 16:51:58]     "pilotErrorCode": 0,
[2026-03-07 16:51:58]     "pilotErrorDiag": "",
[2026-03-07 16:51:58]  *** Listing of results directory ***
[2026-03-07 16:51:58] total 452864
[2026-03-07 16:51:58] -rw-r--r-- 1 boinc boinc    584627 Mar  7 09:32 pilot3.tar.gz
[2026-03-07 16:51:58] -rwx------ 1 boinc boinc     36322 Mar  7 09:32 runpilot2-wrapper.sh
[2026-03-07 16:51:58] -rw-r--r-- 1 boinc boinc      5111 Mar  7 09:33 queuedata.json
[2026-03-07 16:51:58] -rw-r--r-- 1 boinc boinc       100 Mar  7 15:44 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-07 16:51:58] -rwxr-xr-x 1 boinc boinc      7986 Mar  7 15:44 run_atlas
[2026-03-07 16:51:58] -rw-r--r-- 1 boinc boinc       105 Mar  7 15:44 job.xml
[2026-03-07 16:51:58] -rw-r--r-- 2 boinc boinc     15845 Mar  7 15:44 start_atlas.sh
[2026-03-07 16:51:58] drwxrwx--x 2 boinc boinc      4096 Mar  7 15:44 shared
[2026-03-07 16:51:58] -rw-r--r-- 2 boinc boinc    597946 Mar  7 15:44 input.tar.gz
[2026-03-07 16:51:58] -rw-r--r-- 1 boinc boinc      6756 Mar  7 15:44 init_data.xml
[2026-03-07 16:51:58] -rw-r--r-- 2 boinc boinc 266825548 Mar  7 15:44 EVNT.48958575._000094.pool.root.1
[2026-03-07 16:51:58] -rw-r--r-- 1 boinc boinc         0 Mar  7 15:44 boinc_lockfile
[2026-03-07 16:51:58] -rw-r--r-- 1 boinc boinc      2538 Mar  7 15:44 pandaJob.out
[2026-03-07 16:51:58] -rw------- 1 boinc boinc    999177 Mar  7 15:44 agis_schedconf.cvmfs.json
[2026-03-07 16:51:58] -rw------- 1 boinc boinc   1521291 Mar  7 15:44 agis_ddmendpoints.agis.ALL.json
[2026-03-07 16:51:58] -rw------- 1 boinc boinc       435 Mar  7 15:44 workernode_map.json
[2026-03-07 16:51:58] drwx------ 5 boinc boinc      4096 Mar  7 15:44 pilot3
[2026-03-07 16:51:58] -rw------- 1 boinc boinc 191244635 Mar  7 16:50 HITS.48958577._002405.pool.root.1
[2026-03-07 16:51:58] -rw------- 1 boinc boinc      1010 Mar  7 16:50 memory_monitor_summary.json
[2026-03-07 16:51:58] -rw-r--r-- 1 boinc boinc       529 Mar  7 16:51 boinc_task_state.xml
[2026-03-07 16:51:58] -rw------- 1 boinc boinc        95 Mar  7 16:51 pilot_heartbeat.json
[2026-03-07 16:51:58] -rw------- 1 boinc boinc    262323 Mar  7 16:51 log.48958577._002405.job.log.tgz.1
[2026-03-07 16:51:58] -rw------- 1 boinc boinc      6318 Mar  7 16:51 heartbeat.json
[2026-03-07 16:51:58] -rw-r--r-- 1 boinc boinc      8192 Mar  7 16:51 boinc_mmap_file
[2026-03-07 16:51:58] -rw-r--r-- 1 boinc boinc        27 Mar  7 16:51 wrapper_checkpoint.txt
[2026-03-07 16:51:58] -rw------- 1 boinc boinc      5053 Mar  7 16:51 pilotlog.txt
[2026-03-07 16:51:58] -rw------- 1 boinc boinc    598883 Mar  7 16:51 log.48958577._002405.job.log.1
[2026-03-07 16:51:58] -rw------- 1 boinc boinc       357 Mar  7 16:51 output.list
[2026-03-07 16:51:58] -rw-r--r-- 1 boinc boinc       620 Mar  7 16:51 runtime_log
[2026-03-07 16:51:58] -rw------- 1 boinc boinc    880640 Mar  7 16:51 result.tar.gz
[2026-03-07 16:51:58] -rw-r--r-- 1 boinc boinc      8953 Mar  7 16:51 runtime_log.err
[2026-03-07 16:51:58] -rw------- 1 boinc boinc       655 Mar  7 16:51 bkgKDmuG2I9nsSi4ap6QjLDmwznN0nGgGQJmIVkRDmADVLDmIwvMen.diag
[2026-03-07 16:51:58] -rw-r--r-- 1 boinc boinc     21745 Mar  7 16:51 stderr.txt
[2026-03-07 16:51:58] HITS file was successfully produced:
[2026-03-07 16:51:58] -rw------- 1 boinc boinc 191244635 Mar  7 16:50 shared/HITS.pool.root.1
[2026-03-07 16:51:58]  *** Contents of shared directory: ***
[2026-03-07 16:51:58] total 448804
[2026-03-07 16:51:58] -rw-r--r-- 2 boinc boinc     15845 Mar  7 15:44 start_atlas.sh
[2026-03-07 16:51:58] -rw-r--r-- 2 boinc boinc    597946 Mar  7 15:44 input.tar.gz
[2026-03-07 16:51:58] -rw-r--r-- 2 boinc boinc 266825548 Mar  7 15:44 ATLAS.root_0
[2026-03-07 16:51:58] -rw------- 1 boinc boinc 191244635 Mar  7 16:50 HITS.pool.root.1
[2026-03-07 16:51:58] -rw------- 1 boinc boinc    880640 Mar  7 16:51 result.tar.gz
16:51:59 (3792475): run_atlas exited; CPU time 19072.568977
16:51:59 (3792475): called boinc_finish(0)

</stderr_txt>
]]>

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