Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
11:47:45 (55959): wrapper (7.7.26015): starting
11:47:45 (55959): wrapper: running run_atlas (--nthreads 4)
[2026-03-08 11:47:45] Arguments: --nthreads 4
[2026-03-08 11:47:45] Threads: 4
[2026-03-08 11:47:45] Checking for CVMFS
[2026-03-08 11:47:45] No cvmfs_config command found, will try listing directly
[2026-03-08 11:47:45] CVMFS is ok
[2026-03-08 11:47:45] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-08 11:47:45] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-08 11:47:45] Further information can be found at the LHC@home message board.
[2026-03-08 11:47:45] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-08 11:47:45] Checking for apptainer binary...
[2026-03-08 11:47:45] which: no apptainer in ((null))
[2026-03-08 11:47:45] apptainer is not installed, using version from CVMFS
[2026-03-08 11:47:45] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-08 11:47:45] WARNING: Environment variable TMPDIR already has value [/var/lib/boinc/var/slot76/slots/3/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut29.grid.cesnet.cz
[2026-03-08 11:47:45] apptainer works
[2026-03-08 11:47:45] Set ATHENA_PROC_NUMBER=4
[2026-03-08 11:47:45] Set ATHENA_CORE_NUMBER=4
[2026-03-08 11:47:45] Starting ATLAS job with PandaID=7044791805
[2026-03-08 11:47:45] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc/var/slot76/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-08 13:12:10]  *** The last 200 lines of the pilot log: ***
[2026-03-08 13:12:10]  mtime=0
[2026-03-08 13:12:10]  protocol_id=None
[2026-03-08 13:12:10]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2026-03-08 13:12:10]  replicas=None
[2026-03-08 13:12:10]  scope=mc23_13p6TeV
[2026-03-08 13:12:10]  status=None
[2026-03-08 13:12:10]  status_code=0
[2026-03-08 13:12:10]  storage_token=
[2026-03-08 13:12:10]  surl=/var/lib/boinc/var/slot76/slots/3/PanDA_Pilot-7044791805/log.48958577._002483.job.log.tgz.1
[2026-03-08 13:12:10]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/76/cd/log.48958577._002483.job.log.tgz.1
[2026-03-08 13:12:10]  workdir=None
[2026-03-08 13:12:10] ]
[2026-03-08 13:12:10] 2026-03-08 12:11:00,405 | INFO     | transferring file log.48958577._002483.job.log.tgz.1 from /var/lib/boinc/var/slot76/slots/3/PanDA_Pilot-7044791805/log.48958577._002483.job.log.tgz.1 to /var/lib/b
[2026-03-08 13:12:10] 2026-03-08 12:11:00,405 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc/var/slot76/slots/3/PanDA_Pilot-7044791805/log.48958577._002483.job.log.tgz.1 /var/lib/boinc/var/slot76/slots/3/lo
[2026-03-08 13:12:10] 2026-03-08 12:11:00,421 | INFO     | adding to output.list: log.48958577._002483.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/76/cd/log.48958577._002483.job.log.tg
[2026-03-08 13:12:10] 2026-03-08 12:11:00,422 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-03-08 13:12:10] 2026-03-08 12:11:00,422 | INFO     | summary of transferred files:
[2026-03-08 13:12:10] 2026-03-08 12:11:00,422 | INFO     |  -- lfn=log.48958577._002483.job.log.tgz.1, status_code=0, status=transferred
[2026-03-08 13:12:10] 2026-03-08 12:11:00,422 | INFO     | stage-out finished correctly
[2026-03-08 13:12:10] 2026-03-08 12:11:00,705 | WARNING  | process 66513 can no longer be monitored (due to stat problems) - aborting
[2026-03-08 13:12:10] 2026-03-08 12:11:00,705 | INFO     | using path: /var/lib/boinc/var/slot76/slots/3/PanDA_Pilot-7044791805/memory_monitor_summary.json (trf name=prmon)
[2026-03-08 13:12:10] 2026-03-08 12:11:01,158 | INFO     | number of running child processes to parent process 66513: 1
[2026-03-08 13:12:10] 2026-03-08 12:11:01,158 | INFO     | maximum number of monitored processes: 6
[2026-03-08 13:12:10] 2026-03-08 12:11:01,576 | INFO     | time since job start (4984s) is within the limit (349056.0s)
[2026-03-08 13:12:10] 2026-03-08 12:11:02,450 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-03-08 13:12:10] 2026-03-08 12:11:03,582 | INFO     | time since job start (4986s) is within the limit (349056.0s)
[2026-03-08 13:12:10] 2026-03-08 12:11:03,661 | INFO     | monitor loop #361: job 0:7044791805 is in state 'finished'
[2026-03-08 13:12:10] 2026-03-08 12:11:03,661 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-03-08 13:12:10] 2026-03-08 12:11:05,080 | INFO     | job 7044791805 has state=finished
[2026-03-08 13:12:10] 2026-03-08 12:11:05,080 | INFO     | preparing for final server update for job 7044791805 in state='finished'
[2026-03-08 13:12:10] 2026-03-08 12:11:05,080 | INFO     | reading metadata from: /var/lib/boinc/var/slot76/slots/3/PanDA_Pilot-7044791805/jobReport.json
[2026-03-08 13:12:10] 2026-03-08 12:11:05,082 | INFO     | added worker_node to metadata from /var/lib/boinc/var/slot76/slots/3/workernode_map.json
[2026-03-08 13:12:10] 2026-03-08 12:11:05,082 | INFO     | this job has now completed (state=finished)
[2026-03-08 13:12:10] 2026-03-08 12:11:05,083 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-03-08 13:12:10] 2026-03-08 12:11:05,083 | INFO     | log transfer has been attempted: DONE
[2026-03-08 13:12:10] 2026-03-08 12:11:05,083 | INFO     | job 7044791805 has finished - writing final server update
[2026-03-08 13:12:10] 2026-03-08 12:11:05,083 | WARNING  | failed to read HTCondor job classAd: [Errno 2] No such file or directory: '/scratch/condor/execute/dir_4004238/.job.ad'
[2026-03-08 13:12:10] 2026-03-08 12:11:05,083 | INFO     | total number of processed events: 400 (read)
[2026-03-08 13:12:10] 2026-03-08 12:11:05,107 | INFO     | using path: /var/lib/boinc/var/slot76/slots/3/PanDA_Pilot-7044791805/memory_monitor_summary.json (trf name=prmon)
[2026-03-08 13:12:10] 2026-03-08 12:11:05,108 | INFO     | extracted standard info from prmon json
[2026-03-08 13:12:10] 2026-03-08 12:11:05,108 | INFO     | extracted standard memory fields from prmon json
[2026-03-08 13:12:10] 2026-03-08 12:11:05,108 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-03-08 13:12:10] 2026-03-08 12:11:05,108 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-03-08 13:12:10] 2026-03-08 12:11:05,108 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-03-08 13:12:10] 2026-03-08 12:11:05,110 | INFO     | fitting pss+swap vs Time
[2026-03-08 13:12:10] 2026-03-08 12:11:05,110 | INFO     | sum of square deviations: 130793150.0
[2026-03-08 13:12:10] 2026-03-08 12:11:05,110 | INFO     | sum of deviations: 9647577.000000015
[2026-03-08 13:12:10] 2026-03-08 12:11:05,110 | INFO     | mean x: 1772969459.0
[2026-03-08 13:12:10] 2026-03-08 12:11:05,110 | INFO     | mean y: 2334974.04
[2026-03-08 13:12:10] 2026-03-08 12:11:05,110 | INFO     | intersect: -128442970.93915883
[2026-03-08 13:12:10] 2026-03-08 12:11:05,110 | INFO     | chi2: 0.0003684063713296916
[2026-03-08 13:12:10] 2026-03-08 12:11:05,110 | INFO     | current memory leak: 0.07 B/s (using 75 data points, chi2=0.00)
[2026-03-08 13:12:10] 2026-03-08 12:11:05,111 | INFO     | could have reported an average CPU frequency of 3611 MHz (6 samples)
[2026-03-08 13:12:10] 2026-03-08 12:11:05,111 | INFO     | ..............................
[2026-03-08 13:12:10] 2026-03-08 12:11:05,111 | INFO     | . Timing measurements:
[2026-03-08 13:12:10] 2026-03-08 12:11:05,111 | INFO     | . get job = 0 s
[2026-03-08 13:12:10] 2026-03-08 12:11:05,111 | INFO     | . initial setup = 4 s
[2026-03-08 13:12:10] 2026-03-08 12:11:05,111 | INFO     | . payload setup = 4 s
[2026-03-08 13:12:10] 2026-03-08 12:11:05,111 | INFO     | . stage-in = 0 s
[2026-03-08 13:12:10] 2026-03-08 12:11:05,111 | INFO     | . payload execution = 4963 s
[2026-03-08 13:12:10] 2026-03-08 12:11:05,111 | INFO     | . stage-out = 0 s
[2026-03-08 13:12:10] 2026-03-08 12:11:05,111 | INFO     | . log creation = 0 s
[2026-03-08 13:12:10] 2026-03-08 12:11:05,111 | INFO     | ..............................
[2026-03-08 13:12:10] 2026-03-08 12:11:05,161 | INFO     | 
[2026-03-08 13:12:10] 2026-03-08 12:11:05,161 | INFO     | job summary report
[2026-03-08 13:12:10] 2026-03-08 12:11:05,161 | INFO     | --------------------------------------------------
[2026-03-08 13:12:10] 2026-03-08 12:11:05,161 | INFO     | PanDA job id: 7044791805
[2026-03-08 13:12:10] 2026-03-08 12:11:05,161 | INFO     | task id: 48958577
[2026-03-08 13:12:10] 2026-03-08 12:11:05,162 | INFO     | errors: (none)
[2026-03-08 13:12:10] 2026-03-08 12:11:05,162 | INFO     | status: LOG_TRANSFER = DONE 
[2026-03-08 13:12:10] 2026-03-08 12:11:05,162 | INFO     | pilot state: finished 
[2026-03-08 13:12:10] 2026-03-08 12:11:05,162 | INFO     | transexitcode: 0
[2026-03-08 13:12:10] 2026-03-08 12:11:05,162 | INFO     | exeerrorcode: 0
[2026-03-08 13:12:10] 2026-03-08 12:11:05,162 | INFO     | exeerrordiag: 
[2026-03-08 13:12:10] 2026-03-08 12:11:05,162 | INFO     | exitcode: 0
[2026-03-08 13:12:10] 2026-03-08 12:11:05,162 | INFO     | exitmsg: OK
[2026-03-08 13:12:10] 2026-03-08 12:11:05,162 | INFO     | cpuconsumptiontime: 19186 s
[2026-03-08 13:12:10] 2026-03-08 12:11:05,162 | INFO     | nevents: 400
[2026-03-08 13:12:10] 2026-03-08 12:11:05,162 | INFO     | neventsw: 0
[2026-03-08 13:12:10] 2026-03-08 12:11:05,162 | INFO     | pid: 66513
[2026-03-08 13:12:10] 2026-03-08 12:11:05,162 | INFO     | pgrp: 66513
[2026-03-08 13:12:10] 2026-03-08 12:11:05,162 | INFO     | corecount: 4
[2026-03-08 13:12:10] 2026-03-08 12:11:05,162 | INFO     | event service: False
[2026-03-08 13:12:10] 2026-03-08 12:11:05,162 | INFO     | sizes: {0: 2295522, 1: 2295812, 11: 2295812, 4971: 2322128, 4972: 2331148, 4974: 2331204, 4977: 2331526}
[2026-03-08 13:12:10] 2026-03-08 12:11:05,162 | INFO     | --------------------------------------------------
[2026-03-08 13:12:10] 2026-03-08 12:11:05,162 | INFO     | 
[2026-03-08 13:12:10] 2026-03-08 12:11:05,162 | INFO     | executing command: ls -lF /var/lib/boinc/var/slot76/slots/3
[2026-03-08 13:12:10] 2026-03-08 12:11:05,181 | INFO     | queue jobs had 0 job(s) [purged]
[2026-03-08 13:12:10] 2026-03-08 12:11:05,181 | INFO     | queue payloads had 0 job(s) [purged]
[2026-03-08 13:12:10] 2026-03-08 12:11:05,181 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-08 13:12:10] 2026-03-08 12:11:05,181 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-08 13:12:10] 2026-03-08 12:11:05,181 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-08 13:12:10] 2026-03-08 12:11:05,181 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-08 13:12:10] 2026-03-08 12:11:05,181 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-08 13:12:10] 2026-03-08 12:11:05,181 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-08 13:12:10] 2026-03-08 12:11:05,181 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-08 13:12:10] 2026-03-08 12:11:05,181 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-08 13:12:10] 2026-03-08 12:11:05,182 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-08 13:12:10] 2026-03-08 12:11:05,182 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-08 13:12:10] 2026-03-08 12:11:05,182 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-08 13:12:10] 2026-03-08 12:11:05,182 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-08 13:12:10] 2026-03-08 12:11:05,182 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-08 13:12:10] 2026-03-08 12:11:05,182 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-08 13:12:10] 2026-03-08 12:11:05,182 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-08 13:12:10] 2026-03-08 12:11:05,182 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-08 13:12:10] 2026-03-08 12:11:05,182 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-08 13:12:10] 2026-03-08 12:11:05,182 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-08 13:12:10] 2026-03-08 12:11:05,182 | INFO     | job 7044791805 has completed (purged errors)
[2026-03-08 13:12:10] 2026-03-08 12:11:05,182 | INFO     | overall cleanup function is called
[2026-03-08 13:12:10] 2026-03-08 12:11:05,219 | INFO     | PID=60632 has CPU usage=14.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-03-08 13:12:10] 2026-03-08 12:11:05,220 | INFO     | .. there are 48 such processes running
[2026-03-08 13:12:10] 2026-03-08 12:11:06,196 | INFO     | --- collectZombieJob: --- 10, [66513]
[2026-03-08 13:12:10] 2026-03-08 12:11:06,196 | INFO     | zombie collector waiting for pid 66513
[2026-03-08 13:12:10] 2026-03-08 12:11:06,196 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-08 13:12:10] 2026-03-08 12:11:06,196 | INFO     | collected zombie processes
[2026-03-08 13:12:10] 2026-03-08 12:11:06,196 | INFO     | will attempt to kill all subprocesses of pid=66513
[2026-03-08 13:12:10] 2026-03-08 12:11:06,646 | INFO     | process IDs to be killed: [66513] (in reverse order)
[2026-03-08 13:12:10] 2026-03-08 12:11:06,865 | WARNING  | found no corresponding commands to process id(s)
[2026-03-08 13:12:10] 2026-03-08 12:11:06,866 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-08 13:12:10] 2026-03-08 12:11:06,893 | INFO     | did not find any defunct processes belonging to 66513
[2026-03-08 13:12:10] 2026-03-08 12:11:06,920 | INFO     | did not find any defunct processes belonging to 66513
[2026-03-08 13:12:10] 2026-03-08 12:11:06,920 | INFO     | ready for new job
[2026-03-08 13:12:10] 2026-03-08 12:11:06,920 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-08 13:12:10] 2026-03-08 12:11:06,922 | INFO     | **************************************
[2026-03-08 13:12:10] 2026-03-08 12:11:06,922 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-03-08 13:12:10] 2026-03-08 12:11:06,922 | INFO     | **************************************
[2026-03-08 13:12:10] 2026-03-08 12:11:06,922 | INFO     | 
[2026-03-08 13:12:10] 2026-03-08 12:11:06,928 | INFO     | architecture information:
[2026-03-08 13:12:10] 2026-03-08 12:11:06,928 | INFO     | executing command: cat /etc/os-release
[2026-03-08 13:12:10] 2026-03-08 12:11:06,941 | INFO     | cat /etc/os-release:
[2026-03-08 13:12:10] NAME="CentOS Linux"
[2026-03-08 13:12:10] VERSION="7 (Core)"
[2026-03-08 13:12:10] ID="centos"
[2026-03-08 13:12:10] ID_LIKE="rhel fedora"
[2026-03-08 13:12:10] VERSION_ID="7"
[2026-03-08 13:12:10] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-08 13:12:10] ANSI_COLOR="0;31"
[2026-03-08 13:12:10] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-08 13:12:10] HOME_URL="https://www.centos.org/"
[2026-03-08 13:12:10] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-08 13:12:10] 
[2026-03-08 13:12:10] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-08 13:12:10] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-08 13:12:10] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-08 13:12:10] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-08 13:12:10] 
[2026-03-08 13:12:10] 2026-03-08 12:11:06,941 | INFO     | **************************************
[2026-03-08 13:12:10] 2026-03-08 12:11:07,444 | INFO     | executing command: df -mP /var/lib/boinc/var/slot76/slots/3
[2026-03-08 13:12:10] 2026-03-08 12:11:07,458 | INFO     | sufficient remaining disk space (19969081344 B)
[2026-03-08 13:12:10] 2026-03-08 12:11:07,459 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-08 13:12:10] 2026-03-08 12:11:07,459 | INFO     | current server update state: UPDATING_FINAL
[2026-03-08 13:12:10] 2026-03-08 12:11:07,459 | INFO     | update_server=False
[2026-03-08 13:12:10] 2026-03-08 12:11:07,459 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-08 13:12:10] 2026-03-08 12:11:07,459 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-08 13:12:10] 2026-03-08 12:11:07,459 | INFO     | aborting loop
[2026-03-08 13:12:10] 2026-03-08 12:11:07,944 | INFO     | all job control threads have been joined
[2026-03-08 13:12:10] 2026-03-08 12:11:07,972 | INFO     | all payload control threads have been joined
[2026-03-08 13:12:10] 2026-03-08 12:11:08,158 | INFO     | all data control threads have been joined
[2026-03-08 13:12:10] 2026-03-08 12:11:08,464 | INFO     | [job] retrieve thread has finished
[2026-03-08 13:12:10] 2026-03-08 12:11:08,464 | INFO     | [job] job monitor thread has finished
[2026-03-08 13:12:10] 2026-03-08 12:11:08,485 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-08 13:12:10] 2026-03-08 12:11:08,507 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-08 13:12:10] 2026-03-08 12:11:08,747 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-08 13:12:10] 2026-03-08 12:11:08,767 | INFO     | [payload] validate_post thread has finished
[2026-03-08 13:12:10] 2026-03-08 12:11:08,833 | INFO     | [payload] failed_post thread has finished
[2026-03-08 13:12:10] 2026-03-08 12:11:08,949 | INFO     | [job] control thread has finished
[2026-03-08 13:12:10] 2026-03-08 12:11:08,977 | INFO     | [payload] control thread has finished
[2026-03-08 13:12:10] 2026-03-08 12:11:09,163 | INFO     | [data] control thread has finished
[2026-03-08 13:12:10] 2026-03-08 12:11:09,462 | INFO     | [job] validate thread has finished
[2026-03-08 13:12:10] 2026-03-08 12:11:09,711 | INFO     | [payload] execute_payloads thread has finished
[2026-03-08 13:12:10] 2026-03-08 12:11:09,781 | INFO     | [job] create_data_payload thread has finished
[2026-03-08 13:12:10] 2026-03-08 12:11:09,806 | INFO     | [data] copytool_in thread has finished
[2026-03-08 13:12:10] 2026-03-08 12:11:09,829 | INFO     | [payload] validate_pre thread has finished
[2026-03-08 13:12:10] 2026-03-08 12:11:10,171 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-08 13:12:10] 2026-03-08 12:11:10,490 | INFO     | [data] copytool_out thread has finished
[2026-03-08 13:12:10] 2026-03-08 12:11:11,176 | INFO     | [job] queue monitor thread has finished
[2026-03-08 13:12:10] 2026-03-08 12:11:12,510 | INFO     | [data] queue_monitor thread has finished
[2026-03-08 13:12:10] 2026-03-08 12:11:37,856 | INFO     | PID=60632 has CPU usage=3.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-03-08 13:12:10] 2026-03-08 12:11:37,856 | INFO     | .. there are 48 such processes running
[2026-03-08 13:12:10] 2026-03-08 12:11:37,856 | INFO     | found 0 job(s) in 20 queues
[2026-03-08 13:12:10] 2026-03-08 12:11:37,856 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-08 13:12:10] 2026-03-08 12:11:37,856 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-08 13:12:10] 2026-03-08 12:12:05,049 | INFO     | [monitor] cgroup control has ended
[2026-03-08 13:12:10] 2026-03-08 12:12:05,382 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 22740100347712)>', '<ExcThread(monitor, started 22739862959872)>']
[2026-03-08 13:12:10] 2026-03-08 12:12:05,995 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-08 13:12:10] 2026-03-08 12:12:05,995 | INFO     | [monitor] control thread has ended
[2026-03-08 13:12:10] 2026-03-08 12:12:10,407 | INFO     | all workflow threads have been joined
[2026-03-08 13:12:10] 2026-03-08 12:12:10,408 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-08 13:12:10] 2026-03-08 12:12:10,408 | INFO     | traces error code: 0
[2026-03-08 13:12:10] 2026-03-08 12:12:10,408 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-08 13:12:10] 2026-03-08 12:12:10,599 [wrapper] ==== pilot stdout END ====
[2026-03-08 13:12:10] 2026-03-08 12:12:10,602 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-08 13:12:10] 2026-03-08 12:12:10,604 [wrapper] pilotpid: 60632
[2026-03-08 13:12:10] 2026-03-08 12:12:10,607 [wrapper] Pilot exit status: 0
[2026-03-08 13:12:10] 2026-03-08 12:12:10,617 [wrapper] pandaids: 7044791805
[2026-03-08 13:12:10] 2026-03-08 12:12:10,748 [wrapper] cleanup supervisor_pilot  657048 60633
[2026-03-08 13:12:10] 2026-03-08 12:12:10,750 [wrapper] Test setup, not cleaning
[2026-03-08 13:12:10] 2026-03-08 12:12:10,753 [wrapper] apfmon messages muted
[2026-03-08 13:12:10] 2026-03-08 12:12:10,755 [wrapper] ==== wrapper stdout END ====
[2026-03-08 13:12:10] 2026-03-08 12:12:10,756 [wrapper] ==== wrapper stderr END ====
[2026-03-08 13:12:10]  *** Error codes and diagnostics ***
[2026-03-08 13:12:10]     "exeErrorCode": 0,
[2026-03-08 13:12:10]     "exeErrorDiag": "",
[2026-03-08 13:12:10]     "pilotErrorCode": 0,
[2026-03-08 13:12:10]     "pilotErrorDiag": "",
[2026-03-08 13:12:10]  *** Listing of results directory ***
[2026-03-08 13:12:10] total 445760
[2026-03-08 13:12:10] -rwx------. 1 boinc boinc     36322 Mar  7 10:08 runpilot2-wrapper.sh
[2026-03-08 13:12:10] -rw-r--r--. 1 boinc boinc      5111 Mar  7 10:08 queuedata.json
[2026-03-08 13:12:10] -rw-r--r--. 1 boinc boinc    584627 Mar  7 10:08 pilot3.tar.gz
[2026-03-08 13:12:10] -rw-r--r--. 1 boinc boinc       100 Mar  8 11:47 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-08 13:12:10] -rwxr-xr-x. 1 boinc boinc      7986 Mar  8 11:47 run_atlas
[2026-03-08 13:12:10] -rw-r--r--. 1 boinc boinc       105 Mar  8 11:47 job.xml
[2026-03-08 13:12:10] -rw-r--r--. 1 boinc boinc      6707 Mar  8 11:47 init_data.xml
[2026-03-08 13:12:10] -rw-r--r--. 2 boinc boinc 269369665 Mar  8 11:47 EVNT.48958575._000097.pool.root.1
[2026-03-08 13:12:10] -rw-r--r--. 2 boinc boinc     15845 Mar  8 11:47 start_atlas.sh
[2026-03-08 13:12:10] drwxrwx--x. 2 boinc boinc      4096 Mar  8 11:47 shared
[2026-03-08 13:12:10] -rw-r--r--. 2 boinc boinc    597936 Mar  8 11:47 input.tar.gz
[2026-03-08 13:12:10] -rw-r--r--. 1 boinc boinc         0 Mar  8 11:47 boinc_lockfile
[2026-03-08 13:12:10] -rw-r--r--. 1 boinc boinc      2538 Mar  8 11:47 pandaJob.out
[2026-03-08 13:12:10] -rw-------. 1 boinc boinc    999169 Mar  8 11:47 agis_schedconf.cvmfs.json
[2026-03-08 13:12:10] -rw-------. 1 boinc boinc   1521291 Mar  8 11:47 agis_ddmendpoints.agis.ALL.json
[2026-03-08 13:12:10] -rw-------. 1 boinc boinc       443 Mar  8 11:47 workernode_map.json
[2026-03-08 13:12:10] drwx------. 5 boinc boinc      4096 Mar  8 11:47 pilot3
[2026-03-08 13:12:10] -rw-r--r--. 1 boinc boinc       529 Mar  8 13:10 boinc_task_state.xml
[2026-03-08 13:12:10] -rw-------. 1 boinc boinc 181165220 Mar  8 13:10 HITS.48958577._002483.pool.root.1
[2026-03-08 13:12:10] -rw-------. 1 boinc boinc        95 Mar  8 13:10 pilot_heartbeat.json
[2026-03-08 13:12:10] -rw-------. 1 boinc boinc      1030 Mar  8 13:10 memory_monitor_summary.json
[2026-03-08 13:12:10] -rw-------. 1 boinc boinc    267536 Mar  8 13:11 log.48958577._002483.job.log.tgz.1
[2026-03-08 13:12:10] -rw-------. 1 boinc boinc      6343 Mar  8 13:11 heartbeat.json
[2026-03-08 13:12:10] -rw-r--r--. 1 boinc boinc      8192 Mar  8 13:12 boinc_mmap_file
[2026-03-08 13:12:10] -rw-r--r--. 1 boinc boinc        27 Mar  8 13:12 wrapper_checkpoint.txt
[2026-03-08 13:12:10] -rw-------. 1 boinc boinc      4827 Mar  8 13:12 pilotlog.txt
[2026-03-08 13:12:10] -rw-------. 1 boinc boinc    727748 Mar  8 13:12 log.48958577._002483.job.log.1
[2026-03-08 13:12:10] -rw-------. 1 boinc boinc       357 Mar  8 13:12 output.list
[2026-03-08 13:12:10] -rw-r--r--. 1 boinc boinc       620 Mar  8 13:12 runtime_log
[2026-03-08 13:12:10] -rw-------. 1 boinc boinc   1013760 Mar  8 13:12 result.tar.gz
[2026-03-08 13:12:10] -rw-r--r--. 1 boinc boinc      9204 Mar  8 13:12 runtime_log.err
[2026-03-08 13:12:10] -rw-------. 1 boinc boinc       662 Mar  8 13:12 KLeLDmto2I9n9Rq4apOajLDm4fhM0noT9bVooX4SDmv1SLDmgsiVbn.diag
[2026-03-08 13:12:10] -rw-r--r--. 1 boinc boinc     12377 Mar  8 13:12 stderr.txt
[2026-03-08 13:12:10] HITS file was successfully produced:
[2026-03-08 13:12:10] -rw-------. 1 boinc boinc 181165220 Mar  8 13:10 shared/HITS.pool.root.1
[2026-03-08 13:12:10]  *** Contents of shared directory: ***
[2026-03-08 13:12:10] total 441580
[2026-03-08 13:12:10] -rw-r--r--. 2 boinc boinc 269369665 Mar  8 11:47 ATLAS.root_0
[2026-03-08 13:12:10] -rw-r--r--. 2 boinc boinc     15845 Mar  8 11:47 start_atlas.sh
[2026-03-08 13:12:10] -rw-r--r--. 2 boinc boinc    597936 Mar  8 11:47 input.tar.gz
[2026-03-08 13:12:10] -rw-------. 1 boinc boinc 181165220 Mar  8 13:10 HITS.pool.root.1
[2026-03-08 13:12:10] -rw-------. 1 boinc boinc   1013760 Mar  8 13:12 result.tar.gz
13:12:11 (55959): run_atlas exited; CPU time 19409.965185
13:12:11 (55959): called boinc_finish(0)

</stderr_txt>
]]>

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