Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
04:36:12 (936622): wrapper (7.7.26015): starting
04:36:12 (936622): wrapper: running run_atlas (--nthreads 4)
[2026-03-09 04:36:12] Arguments: --nthreads 4
[2026-03-09 04:36:12] Threads: 4
[2026-03-09 04:36:12] Checking for CVMFS
[2026-03-09 04:36:12] No cvmfs_config command found, will try listing directly
[2026-03-09 04:36:12] CVMFS is ok
[2026-03-09 04:36:12] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-09 04:36:12] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-09 04:36:12] Further information can be found at the LHC@home message board.
[2026-03-09 04:36:12] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-09 04:36:12] Checking for apptainer binary...
[2026-03-09 04:36:12] which: no apptainer in ((null))
[2026-03-09 04:36:12] apptainer is not installed, using version from CVMFS
[2026-03-09 04:36:12] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-09 04:36:12] WARNING: Environment variable TMPDIR already has value [/var/lib/boinc/var/slot192/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut22.grid.cesnet.cz
[2026-03-09 04:36:12] apptainer works
[2026-03-09 04:36:12] Set ATHENA_PROC_NUMBER=4
[2026-03-09 04:36:12] Set ATHENA_CORE_NUMBER=4
[2026-03-09 04:36:12] Starting ATLAS job with PandaID=7039100116
[2026-03-09 04:36:12] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc/var/slot192/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-09 05:56:38]  *** The last 200 lines of the pilot log: ***
[2026-03-09 05:56:38]  guid=0158a5a4-7324-4925-beb5-6b15542f22aa
[2026-03-09 05:56:38]  inputddms=['NDGF-T1_DATADISK', 'CERN-PROD_DATADISK']
[2026-03-09 05:56:38]  is_altstaged=None
[2026-03-09 05:56:38]  is_tar=False
[2026-03-09 05:56:38]  lfn=log.48955010._011278.job.log.tgz.1
[2026-03-09 05:56:38]  mtime=0
[2026-03-09 05:56:38]  protocol_id=None
[2026-03-09 05:56:38]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2026-03-09 05:56:38]  replicas=None
[2026-03-09 05:56:38]  scope=mc23_13p6TeV
[2026-03-09 05:56:38]  status=None
[2026-03-09 05:56:38]  status_code=0
[2026-03-09 05:56:38]  storage_token=
[2026-03-09 05:56:38]  surl=/var/lib/boinc/var/slot192/slots/0/PanDA_Pilot-7039100116/log.48955010._011278.job.log.tgz.1
[2026-03-09 05:56:38]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/e5/b4/log.48955010._011278.job.log.tgz.1
[2026-03-09 05:56:38]  workdir=None
[2026-03-09 05:56:38] ]
[2026-03-09 05:56:38] 2026-03-09 04:55:35,494 | INFO     | transferring file log.48955010._011278.job.log.tgz.1 from /var/lib/boinc/var/slot192/slots/0/PanDA_Pilot-7039100116/log.48955010._011278.job.log.tgz.1 to /var/lib/
[2026-03-09 05:56:38] 2026-03-09 04:55:35,494 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc/var/slot192/slots/0/PanDA_Pilot-7039100116/log.48955010._011278.job.log.tgz.1 /var/lib/boinc/var/slot192/slots/0/
[2026-03-09 05:56:38] 2026-03-09 04:55:35,512 | INFO     | adding to output.list: log.48955010._011278.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/e5/b4/log.48955010._011278.job.log.tg
[2026-03-09 05:56:38] 2026-03-09 04:55:35,512 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-03-09 05:56:38] 2026-03-09 04:55:35,512 | INFO     | summary of transferred files:
[2026-03-09 05:56:38] 2026-03-09 04:55:35,512 | INFO     |  -- lfn=log.48955010._011278.job.log.tgz.1, status_code=0, status=transferred
[2026-03-09 05:56:38] 2026-03-09 04:55:35,513 | INFO     | stage-out finished correctly
[2026-03-09 05:56:38] 2026-03-09 04:55:36,385 | INFO     | time since job start (4752s) is within the limit (349056.0s)
[2026-03-09 05:56:38] 2026-03-09 04:55:36,851 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-03-09 05:56:38] 2026-03-09 04:55:36,983 | INFO     | monitor loop #343: job 0:7039100116 is in state 'finished'
[2026-03-09 05:56:38] 2026-03-09 04:55:36,983 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-03-09 05:56:38] 2026-03-09 04:55:37,055 | INFO     | job 7039100116 has state=finished
[2026-03-09 05:56:38] 2026-03-09 04:55:37,055 | INFO     | preparing for final server update for job 7039100116 in state='finished'
[2026-03-09 05:56:38] 2026-03-09 04:55:37,055 | INFO     | reading metadata from: /var/lib/boinc/var/slot192/slots/0/PanDA_Pilot-7039100116/jobReport.json
[2026-03-09 05:56:38] 2026-03-09 04:55:37,057 | INFO     | added worker_node to metadata from /var/lib/boinc/var/slot192/slots/0/workernode_map.json
[2026-03-09 05:56:38] 2026-03-09 04:55:37,057 | INFO     | this job has now completed (state=finished)
[2026-03-09 05:56:38] 2026-03-09 04:55:37,057 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-03-09 05:56:38] 2026-03-09 04:55:37,057 | INFO     | log transfer has been attempted: DONE
[2026-03-09 05:56:38] 2026-03-09 04:55:37,057 | INFO     | job 7039100116 has finished - writing final server update
[2026-03-09 05:56:38] 2026-03-09 04:55:37,057 | WARNING  | failed to read HTCondor job classAd: [Errno 2] No such file or directory: '/scratch/condor/execute/dir_391267/.job.ad'
[2026-03-09 05:56:38] 2026-03-09 04:55:37,057 | INFO     | total number of processed events: 400 (read)
[2026-03-09 05:56:38] 2026-03-09 04:55:37,075 | INFO     | using path: /var/lib/boinc/var/slot192/slots/0/PanDA_Pilot-7039100116/memory_monitor_summary.json (trf name=prmon)
[2026-03-09 05:56:38] 2026-03-09 04:55:37,076 | INFO     | extracted standard info from prmon json
[2026-03-09 05:56:38] 2026-03-09 04:55:37,076 | INFO     | extracted standard memory fields from prmon json
[2026-03-09 05:56:38] 2026-03-09 04:55:37,076 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-03-09 05:56:38] 2026-03-09 04:55:37,076 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-03-09 05:56:38] 2026-03-09 04:55:37,076 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-03-09 05:56:38] 2026-03-09 04:55:37,077 | INFO     | fitting pss+swap vs Time
[2026-03-09 05:56:38] 2026-03-09 04:55:37,077 | INFO     | sum of square deviations: 110960220.0
[2026-03-09 05:56:38] 2026-03-09 04:55:37,078 | INFO     | sum of deviations: -12213054.0
[2026-03-09 05:56:38] 2026-03-09 04:55:37,078 | INFO     | mean x: 1773029845.0
[2026-03-09 05:56:38] 2026-03-09 04:55:37,078 | INFO     | mean y: 2331495.2112676054
[2026-03-09 05:56:38] 2026-03-09 04:55:37,078 | INFO     | intersect: 197483498.7004156
[2026-03-09 05:56:38] 2026-03-09 04:55:37,078 | INFO     | chi2: 8.498591766849368e-05
[2026-03-09 05:56:38] 2026-03-09 04:55:37,078 | INFO     | current memory leak: -0.11 B/s (using 71 data points, chi2=0.00)
[2026-03-09 05:56:38] 2026-03-09 04:55:37,078 | INFO     | could have reported an average CPU frequency of 3629 MHz (6 samples)
[2026-03-09 05:56:38] 2026-03-09 04:55:37,078 | INFO     | ..............................
[2026-03-09 05:56:38] 2026-03-09 04:55:37,078 | INFO     | . Timing measurements:
[2026-03-09 05:56:38] 2026-03-09 04:55:37,078 | INFO     | . get job = 0 s
[2026-03-09 05:56:38] 2026-03-09 04:55:37,078 | INFO     | . initial setup = 5 s
[2026-03-09 05:56:38] 2026-03-09 04:55:37,078 | INFO     | . payload setup = 4 s
[2026-03-09 05:56:38] 2026-03-09 04:55:37,078 | INFO     | . stage-in = 0 s
[2026-03-09 05:56:38] 2026-03-09 04:55:37,078 | INFO     | . payload execution = 4730 s
[2026-03-09 05:56:38] 2026-03-09 04:55:37,078 | INFO     | . stage-out = 0 s
[2026-03-09 05:56:38] 2026-03-09 04:55:37,078 | INFO     | . log creation = 0 s
[2026-03-09 05:56:38] 2026-03-09 04:55:37,078 | INFO     | ..............................
[2026-03-09 05:56:38] 2026-03-09 04:55:37,125 | INFO     | 
[2026-03-09 05:56:38] 2026-03-09 04:55:37,125 | INFO     | job summary report
[2026-03-09 05:56:38] 2026-03-09 04:55:37,125 | INFO     | --------------------------------------------------
[2026-03-09 05:56:38] 2026-03-09 04:55:37,125 | INFO     | PanDA job id: 7039100116
[2026-03-09 05:56:38] 2026-03-09 04:55:37,125 | INFO     | task id: 48955010
[2026-03-09 05:56:38] 2026-03-09 04:55:37,125 | INFO     | errors: (none)
[2026-03-09 05:56:38] 2026-03-09 04:55:37,125 | INFO     | status: LOG_TRANSFER = DONE 
[2026-03-09 05:56:38] 2026-03-09 04:55:37,125 | INFO     | pilot state: finished 
[2026-03-09 05:56:38] 2026-03-09 04:55:37,125 | INFO     | transexitcode: 0
[2026-03-09 05:56:38] 2026-03-09 04:55:37,125 | INFO     | exeerrorcode: 0
[2026-03-09 05:56:38] 2026-03-09 04:55:37,125 | INFO     | exeerrordiag: 
[2026-03-09 05:56:38] 2026-03-09 04:55:37,126 | INFO     | exitcode: 0
[2026-03-09 05:56:38] 2026-03-09 04:55:37,126 | INFO     | exitmsg: OK
[2026-03-09 05:56:38] 2026-03-09 04:55:37,126 | INFO     | cpuconsumptiontime: 18104 s
[2026-03-09 05:56:38] 2026-03-09 04:55:37,126 | INFO     | nevents: 400
[2026-03-09 05:56:38] 2026-03-09 04:55:37,126 | INFO     | neventsw: 0
[2026-03-09 05:56:38] 2026-03-09 04:55:37,126 | INFO     | pid: 955426
[2026-03-09 05:56:38] 2026-03-09 04:55:37,126 | INFO     | pgrp: 955426
[2026-03-09 05:56:38] 2026-03-09 04:55:37,126 | INFO     | corecount: 4
[2026-03-09 05:56:38] 2026-03-09 04:55:37,126 | INFO     | event service: False
[2026-03-09 05:56:38] 2026-03-09 04:55:37,126 | INFO     | sizes: {0: 2280189, 11: 2280189, 4738: 2306445, 4739: 2315467, 4741: 2315717}
[2026-03-09 05:56:38] 2026-03-09 04:55:37,126 | INFO     | --------------------------------------------------
[2026-03-09 05:56:38] 2026-03-09 04:55:37,126 | INFO     | 
[2026-03-09 05:56:38] 2026-03-09 04:55:37,126 | INFO     | executing command: ls -lF /var/lib/boinc/var/slot192/slots/0
[2026-03-09 05:56:38] 2026-03-09 04:55:37,145 | INFO     | queue jobs had 0 job(s) [purged]
[2026-03-09 05:56:38] 2026-03-09 04:55:37,145 | INFO     | queue payloads had 0 job(s) [purged]
[2026-03-09 05:56:38] 2026-03-09 04:55:37,145 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-09 05:56:38] 2026-03-09 04:55:37,145 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-09 05:56:38] 2026-03-09 04:55:37,145 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-09 05:56:38] 2026-03-09 04:55:37,145 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-09 05:56:38] 2026-03-09 04:55:37,145 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-09 05:56:38] 2026-03-09 04:55:37,145 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-09 05:56:38] 2026-03-09 04:55:37,145 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-09 05:56:38] 2026-03-09 04:55:37,145 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-09 05:56:38] 2026-03-09 04:55:37,145 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-09 05:56:38] 2026-03-09 04:55:37,145 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-09 05:56:38] 2026-03-09 04:55:37,145 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-09 05:56:38] 2026-03-09 04:55:37,145 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-09 05:56:38] 2026-03-09 04:55:37,146 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-09 05:56:38] 2026-03-09 04:55:37,146 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-09 05:56:38] 2026-03-09 04:55:37,146 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-09 05:56:38] 2026-03-09 04:55:37,146 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-09 05:56:38] 2026-03-09 04:55:37,146 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-09 05:56:38] 2026-03-09 04:55:37,146 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-09 05:56:38] 2026-03-09 04:55:37,146 | INFO     | job 7039100116 has completed (purged errors)
[2026-03-09 05:56:38] 2026-03-09 04:55:37,146 | INFO     | overall cleanup function is called
[2026-03-09 05:56:38] 2026-03-09 04:55:38,152 | INFO     | --- collectZombieJob: --- 10, [955426]
[2026-03-09 05:56:38] 2026-03-09 04:55:38,153 | INFO     | zombie collector waiting for pid 955426
[2026-03-09 05:56:38] 2026-03-09 04:55:38,153 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-09 05:56:38] 2026-03-09 04:55:38,153 | INFO     | collected zombie processes
[2026-03-09 05:56:38] 2026-03-09 04:55:38,153 | INFO     | will attempt to kill all subprocesses of pid=955426
[2026-03-09 05:56:38] 2026-03-09 04:55:38,633 | INFO     | process IDs to be killed: [955426] (in reverse order)
[2026-03-09 05:56:38] 2026-03-09 04:55:38,862 | WARNING  | found no corresponding commands to process id(s)
[2026-03-09 05:56:38] 2026-03-09 04:55:38,862 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-09 05:56:38] 2026-03-09 04:55:38,893 | INFO     | did not find any defunct processes belonging to 955426
[2026-03-09 05:56:38] 2026-03-09 04:55:38,924 | INFO     | did not find any defunct processes belonging to 955426
[2026-03-09 05:56:38] 2026-03-09 04:55:38,925 | INFO     | ready for new job
[2026-03-09 05:56:38] 2026-03-09 04:55:38,925 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-09 05:56:38] 2026-03-09 04:55:38,926 | INFO     | **************************************
[2026-03-09 05:56:38] 2026-03-09 04:55:38,926 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-03-09 05:56:38] 2026-03-09 04:55:38,926 | INFO     | **************************************
[2026-03-09 05:56:38] 2026-03-09 04:55:38,926 | INFO     | 
[2026-03-09 05:56:38] 2026-03-09 04:55:38,933 | INFO     | architecture information:
[2026-03-09 05:56:38] 2026-03-09 04:55:38,933 | INFO     | executing command: cat /etc/os-release
[2026-03-09 05:56:38] 2026-03-09 04:55:38,946 | INFO     | cat /etc/os-release:
[2026-03-09 05:56:38] NAME="CentOS Linux"
[2026-03-09 05:56:38] VERSION="7 (Core)"
[2026-03-09 05:56:38] ID="centos"
[2026-03-09 05:56:38] ID_LIKE="rhel fedora"
[2026-03-09 05:56:38] VERSION_ID="7"
[2026-03-09 05:56:38] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-09 05:56:38] ANSI_COLOR="0;31"
[2026-03-09 05:56:38] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-09 05:56:38] HOME_URL="https://www.centos.org/"
[2026-03-09 05:56:38] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-09 05:56:38] 
[2026-03-09 05:56:38] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-09 05:56:38] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-09 05:56:38] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-09 05:56:38] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-09 05:56:38] 
[2026-03-09 05:56:38] 2026-03-09 04:55:38,946 | INFO     | **************************************
[2026-03-09 05:56:38] 2026-03-09 04:55:39,449 | INFO     | executing command: df -mP /var/lib/boinc/var/slot192/slots/0
[2026-03-09 05:56:38] 2026-03-09 04:55:39,463 | INFO     | sufficient remaining disk space (20998782976 B)
[2026-03-09 05:56:38] 2026-03-09 04:55:39,463 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-09 05:56:38] 2026-03-09 04:55:39,463 | INFO     | current server update state: UPDATING_FINAL
[2026-03-09 05:56:38] 2026-03-09 04:55:39,463 | INFO     | update_server=False
[2026-03-09 05:56:38] 2026-03-09 04:55:39,463 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-09 05:56:38] 2026-03-09 04:55:39,464 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-09 05:56:38] 2026-03-09 04:55:39,486 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-03-09 05:56:38] 2026-03-09 04:55:39,486 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-03-09 05:56:38] 2026-03-09 04:55:39,486 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-09 05:56:38] 2026-03-09 04:55:39,486 | INFO     | will abort loop
[2026-03-09 05:56:38] 2026-03-09 04:55:39,701 | INFO     | all data control threads have been joined
[2026-03-09 05:56:38] 2026-03-09 04:55:39,916 | INFO     | all payload control threads have been joined
[2026-03-09 05:56:38] 2026-03-09 04:55:40,008 | INFO     | all job control threads have been joined
[2026-03-09 05:56:38] 2026-03-09 04:55:40,469 | INFO     | [job] retrieve thread has finished
[2026-03-09 05:56:38] 2026-03-09 04:55:40,491 | INFO     | [job] job monitor thread has finished
[2026-03-09 05:56:38] 2026-03-09 04:55:40,706 | INFO     | [data] control thread has finished
[2026-03-09 05:56:38] 2026-03-09 04:55:40,888 | INFO     | [job] validate thread has finished
[2026-03-09 05:56:38] 2026-03-09 04:55:40,890 | INFO     | [payload] failed_post thread has finished
[2026-03-09 05:56:38] 2026-03-09 04:55:40,922 | INFO     | [payload] control thread has finished
[2026-03-09 05:56:38] 2026-03-09 04:55:41,013 | INFO     | [job] control thread has finished
[2026-03-09 05:56:38] 2026-03-09 04:55:41,105 | INFO     | [job] create_data_payload thread has finished
[2026-03-09 05:56:38] 2026-03-09 04:55:41,228 | INFO     | [payload] validate_pre thread has finished
[2026-03-09 05:56:38] 2026-03-09 04:55:41,352 | INFO     | [data] copytool_in thread has finished
[2026-03-09 05:56:38] 2026-03-09 04:55:41,469 | INFO     | [data] copytool_out thread has finished
[2026-03-09 05:56:38] 2026-03-09 04:55:41,557 | INFO     | [payload] execute_payloads thread has finished
[2026-03-09 05:56:38] 2026-03-09 04:55:41,783 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-09 05:56:38] 2026-03-09 04:55:42,009 | INFO     | [payload] validate_post thread has finished
[2026-03-09 05:56:38] 2026-03-09 04:55:42,135 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-09 05:56:38] 2026-03-09 04:55:42,907 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-09 05:56:38] 2026-03-09 04:55:43,140 | INFO     | [job] queue monitor thread has finished
[2026-03-09 05:56:38] 2026-03-09 04:55:46,912 | INFO     | [data] queue_monitor thread has finished
[2026-03-09 05:56:38] 2026-03-09 04:56:10,031 | INFO     | PID=943796 has CPU usage=5.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-03-09 05:56:38] 2026-03-09 04:56:10,034 | INFO     | .. there are 48 such processes running
[2026-03-09 05:56:38] 2026-03-09 04:56:10,034 | INFO     | found 0 job(s) in 20 queues
[2026-03-09 05:56:38] 2026-03-09 04:56:10,035 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-09 05:56:38] 2026-03-09 04:56:10,035 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-09 05:56:38] 2026-03-09 04:56:32,162 | INFO     | [monitor] cgroup control has ended
[2026-03-09 05:56:38] 2026-03-09 04:56:33,063 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 22360992077632)>', '<ExcThread(monitor, started 22360754501376)>']
[2026-03-09 05:56:38] 2026-03-09 04:56:33,149 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-09 05:56:38] 2026-03-09 04:56:33,150 | INFO     | [monitor] control thread has ended
[2026-03-09 05:56:38] 2026-03-09 04:56:38,088 | INFO     | all workflow threads have been joined
[2026-03-09 05:56:38] 2026-03-09 04:56:38,088 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-09 05:56:38] 2026-03-09 04:56:38,088 | INFO     | traces error code: 0
[2026-03-09 05:56:38] 2026-03-09 04:56:38,088 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-09 05:56:38] 2026-03-09 04:56:38,320 [wrapper] ==== pilot stdout END ====
[2026-03-09 05:56:38] 2026-03-09 04:56:38,322 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-09 05:56:38] 2026-03-09 04:56:38,324 [wrapper] pilotpid: 943796
[2026-03-09 05:56:38] 2026-03-09 04:56:38,326 [wrapper] Pilot exit status: 0
[2026-03-09 05:56:38] 2026-03-09 04:56:38,334 [wrapper] pandaids: 7039100116
[2026-03-09 05:56:38] 2026-03-09 04:56:38,462 [wrapper] cleanup supervisor_pilot 1624082 943797
[2026-03-09 05:56:38] 2026-03-09 04:56:38,465 [wrapper] Test setup, not cleaning
[2026-03-09 05:56:38] 2026-03-09 04:56:38,468 [wrapper] apfmon messages muted
[2026-03-09 05:56:38] 2026-03-09 04:56:38,470 [wrapper] ==== wrapper stdout END ====
[2026-03-09 05:56:38] 2026-03-09 04:56:38,472 [wrapper] ==== wrapper stderr END ====
[2026-03-09 05:56:38]  *** Error codes and diagnostics ***
[2026-03-09 05:56:38]     "exeErrorCode": 0,
[2026-03-09 05:56:38]     "exeErrorDiag": "",
[2026-03-09 05:56:38]     "pilotErrorCode": 0,
[2026-03-09 05:56:38]     "pilotErrorDiag": "",
[2026-03-09 05:56:38]  *** Listing of results directory ***
[2026-03-09 05:56:38] total 619468
[2026-03-09 05:56:38] -rw-r--r--. 1 boinc boinc    584627 Mar  7 13:35 pilot3.tar.gz
[2026-03-09 05:56:38] -rwx------. 1 boinc boinc     36322 Mar  7 13:37 runpilot2-wrapper.sh
[2026-03-09 05:56:38] -rw-r--r--. 1 boinc boinc      5111 Mar  7 13:38 queuedata.json
[2026-03-09 05:56:38] -rw-r--r--. 1 boinc boinc       100 Mar  9 04:36 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-09 05:56:38] -rwxr-xr-x. 1 boinc boinc      7986 Mar  9 04:36 run_atlas
[2026-03-09 05:56:38] -rw-r--r--. 1 boinc boinc       105 Mar  9 04:36 job.xml
[2026-03-09 05:56:38] -rw-r--r--. 2 boinc boinc 445034787 Mar  9 04:36 EVNT.46701403._001226.pool.root.1
[2026-03-09 05:56:38] -rw-r--r--. 1 boinc boinc      6708 Mar  9 04:36 init_data.xml
[2026-03-09 05:56:38] -rw-r--r--. 2 boinc boinc     15845 Mar  9 04:36 start_atlas.sh
[2026-03-09 05:56:38] drwxrwx--x. 2 boinc boinc      4096 Mar  9 04:36 shared
[2026-03-09 05:56:38] -rw-r--r--. 2 boinc boinc    597953 Mar  9 04:36 input.tar.gz
[2026-03-09 05:56:38] -rw-r--r--. 1 boinc boinc         0 Mar  9 04:36 boinc_lockfile
[2026-03-09 05:56:38] -rw-r--r--. 1 boinc boinc      2562 Mar  9 04:36 pandaJob.out
[2026-03-09 05:56:38] -rw-------. 1 boinc boinc    999108 Mar  9 04:36 agis_schedconf.cvmfs.json
[2026-03-09 05:56:38] -rw-------. 1 boinc boinc   1511578 Mar  9 04:36 agis_ddmendpoints.agis.ALL.json
[2026-03-09 05:56:38] -rw-------. 1 boinc boinc       445 Mar  9 04:36 workernode_map.json
[2026-03-09 05:56:38] drwx------. 5 boinc boinc      4096 Mar  9 04:36 pilot3
[2026-03-09 05:56:38] -rw-------. 1 boinc boinc 183416083 Mar  9 05:55 HITS.48955010._011278.pool.root.1
[2026-03-09 05:56:38] -rw-r--r--. 1 boinc boinc       530 Mar  9 05:55 boinc_task_state.xml
[2026-03-09 05:56:38] -rw-------. 1 boinc boinc      1043 Mar  9 05:55 memory_monitor_summary.json
[2026-03-09 05:56:38] -rw-------. 1 boinc boinc    279895 Mar  9 05:55 log.48955010._011278.job.log.tgz.1
[2026-03-09 05:56:38] -rw-------. 1 boinc boinc      6355 Mar  9 05:55 heartbeat.json
[2026-03-09 05:56:38] -rw-------. 1 boinc boinc        95 Mar  9 05:56 pilot_heartbeat.json
[2026-03-09 05:56:38] -rw-r--r--. 1 boinc boinc      8192 Mar  9 05:56 boinc_mmap_file
[2026-03-09 05:56:38] -rw-r--r--. 1 boinc boinc        27 Mar  9 05:56 wrapper_checkpoint.txt
[2026-03-09 05:56:38] -rw-------. 1 boinc boinc      5015 Mar  9 05:56 pilotlog.txt
[2026-03-09 05:56:38] -rw-------. 1 boinc boinc    695849 Mar  9 05:56 log.48955010._011278.job.log.1
[2026-03-09 05:56:38] -rw-------. 1 boinc boinc       357 Mar  9 05:56 output.list
[2026-03-09 05:56:38] -rw-r--r--. 1 boinc boinc       620 Mar  9 05:56 runtime_log
[2026-03-09 05:56:38] -rw-------. 1 boinc boinc    993280 Mar  9 05:56 result.tar.gz
[2026-03-09 05:56:38] -rw-r--r--. 1 boinc boinc      9221 Mar  9 05:56 runtime_log.err
[2026-03-09 05:56:38] -rw-------. 1 boinc boinc       662 Mar  9 05:56 9uhNDmd55I9n9Rq4apOajLDm4fhM0noT9bVooX4SDmobTLDmBTUi4m.diag
[2026-03-09 05:56:38] -rw-r--r--. 1 boinc boinc     21221 Mar  9 05:56 stderr.txt
[2026-03-09 05:56:38] HITS file was successfully produced:
[2026-03-09 05:56:38] -rw-------. 1 boinc boinc 183416083 Mar  9 05:55 shared/HITS.pool.root.1
[2026-03-09 05:56:38]  *** Contents of shared directory: ***
[2026-03-09 05:56:38] total 615308
[2026-03-09 05:56:38] -rw-r--r--. 2 boinc boinc 445034787 Mar  9 04:36 ATLAS.root_0
[2026-03-09 05:56:38] -rw-r--r--. 2 boinc boinc     15845 Mar  9 04:36 start_atlas.sh
[2026-03-09 05:56:38] -rw-r--r--. 2 boinc boinc    597953 Mar  9 04:36 input.tar.gz
[2026-03-09 05:56:38] -rw-------. 1 boinc boinc 183416083 Mar  9 05:55 HITS.pool.root.1
[2026-03-09 05:56:38] -rw-------. 1 boinc boinc    993280 Mar  9 05:56 result.tar.gz
05:56:40 (936622): run_atlas exited; CPU time 18304.613998
05:56:40 (936622): called boinc_finish(0)

</stderr_txt>
]]>

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