Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
20:04:21 (516957): wrapper (7.7.26015): starting
20:04:21 (516957): wrapper: running run_atlas (--nthreads 4)
[2026-03-08 20:04:21] Arguments: --nthreads 4
[2026-03-08 20:04:21] Threads: 4
[2026-03-08 20:04:21] Checking for CVMFS
[2026-03-08 20:04:21] No cvmfs_config command found, will try listing directly
[2026-03-08 20:04:21] CVMFS is ok
[2026-03-08 20:04:21] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-08 20:04:21] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-08 20:04:21] Further information can be found at the LHC@home message board.
[2026-03-08 20:04:21] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-08 20:04:21] Checking for apptainer binary...
[2026-03-08 20:04:21] which: no apptainer in ((null))
[2026-03-08 20:04:21] apptainer is not installed, using version from CVMFS
[2026-03-08 20:04:21] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-08 20:04:21] WARNING: Environment variable TMPDIR already has value [/var/lib/boinc/var/slot212/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut22.grid.cesnet.cz
[2026-03-08 20:04:21] apptainer works
[2026-03-08 20:04:21] Set ATHENA_PROC_NUMBER=4
[2026-03-08 20:04:21] Set ATHENA_CORE_NUMBER=4
[2026-03-08 20:04:21] Starting ATLAS job with PandaID=7039099098
[2026-03-08 20:04:21] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc/var/slot212/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-08 21:26:51]  *** The last 200 lines of the pilot log: ***
[2026-03-08 21:26:51]  mtime=0
[2026-03-08 21:26:51]  protocol_id=None
[2026-03-08 21:26:51]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2026-03-08 21:26:51]  replicas=None
[2026-03-08 21:26:51]  scope=mc23_13p6TeV
[2026-03-08 21:26:51]  status=None
[2026-03-08 21:26:51]  status_code=0
[2026-03-08 21:26:51]  storage_token=
[2026-03-08 21:26:51]  surl=/var/lib/boinc/var/slot212/slots/0/PanDA_Pilot-7039099098/log.48955015._007100.job.log.tgz.1
[2026-03-08 21:26:51]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/6c/38/log.48955015._007100.job.log.tgz.1
[2026-03-08 21:26:51]  workdir=None
[2026-03-08 21:26:51] ]
[2026-03-08 21:26:51] 2026-03-08 20:26:00,907 | INFO     | transferring file log.48955015._007100.job.log.tgz.1 from /var/lib/boinc/var/slot212/slots/0/PanDA_Pilot-7039099098/log.48955015._007100.job.log.tgz.1 to /var/lib/
[2026-03-08 21:26:51] 2026-03-08 20:26:00,907 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc/var/slot212/slots/0/PanDA_Pilot-7039099098/log.48955015._007100.job.log.tgz.1 /var/lib/boinc/var/slot212/slots/0/
[2026-03-08 21:26:51] 2026-03-08 20:26:00,926 | INFO     | adding to output.list: log.48955015._007100.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/6c/38/log.48955015._007100.job.log.tg
[2026-03-08 21:26:51] 2026-03-08 20:26:00,927 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-03-08 21:26:51] 2026-03-08 20:26:00,927 | INFO     | summary of transferred files:
[2026-03-08 21:26:51] 2026-03-08 20:26:00,927 | INFO     |  -- lfn=log.48955015._007100.job.log.tgz.1, status_code=0, status=transferred
[2026-03-08 21:26:51] 2026-03-08 20:26:00,927 | INFO     | stage-out finished correctly
[2026-03-08 21:26:51] 2026-03-08 20:26:00,977 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-03-08 21:26:51] 2026-03-08 20:26:02,071 | INFO     | job 7039099098 has state=finished
[2026-03-08 21:26:51] 2026-03-08 20:26:02,071 | INFO     | preparing for final server update for job 7039099098 in state='finished'
[2026-03-08 21:26:51] 2026-03-08 20:26:02,071 | INFO     | reading metadata from: /var/lib/boinc/var/slot212/slots/0/PanDA_Pilot-7039099098/jobReport.json
[2026-03-08 21:26:51] 2026-03-08 20:26:02,073 | INFO     | added worker_node to metadata from /var/lib/boinc/var/slot212/slots/0/workernode_map.json
[2026-03-08 21:26:51] 2026-03-08 20:26:02,074 | INFO     | this job has now completed (state=finished)
[2026-03-08 21:26:51] 2026-03-08 20:26:02,074 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-03-08 21:26:51] 2026-03-08 20:26:02,074 | INFO     | log transfer has been attempted: DONE
[2026-03-08 21:26:51] 2026-03-08 20:26:02,074 | INFO     | job 7039099098 has finished - writing final server update
[2026-03-08 21:26:51] 2026-03-08 20:26:02,074 | WARNING  | failed to read HTCondor job classAd: [Errno 2] No such file or directory: '/scratch/condor/execute/dir_391369/.job.ad'
[2026-03-08 21:26:51] 2026-03-08 20:26:02,074 | INFO     | total number of processed events: 400 (read)
[2026-03-08 21:26:51] 2026-03-08 20:26:02,092 | INFO     | using path: /var/lib/boinc/var/slot212/slots/0/PanDA_Pilot-7039099098/memory_monitor_summary.json (trf name=prmon)
[2026-03-08 21:26:51] 2026-03-08 20:26:02,092 | INFO     | extracted standard info from prmon json
[2026-03-08 21:26:51] 2026-03-08 20:26:02,092 | INFO     | extracted standard memory fields from prmon json
[2026-03-08 21:26:51] 2026-03-08 20:26:02,092 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-03-08 21:26:51] 2026-03-08 20:26:02,093 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-03-08 21:26:51] 2026-03-08 20:26:02,093 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-03-08 21:26:51] 2026-03-08 20:26:02,094 | INFO     | fitting pss+swap vs Time
[2026-03-08 21:26:51] 2026-03-08 20:26:02,094 | INFO     | sum of square deviations: 120605052.0
[2026-03-08 21:26:51] 2026-03-08 20:26:02,094 | INFO     | sum of deviations: -605189722.9999999
[2026-03-08 21:26:51] 2026-03-08 20:26:02,094 | INFO     | mean x: 1772999201.0
[2026-03-08 21:26:51] 2026-03-08 20:26:02,094 | INFO     | mean y: 2338166.6301369863
[2026-03-08 21:26:51] 2026-03-08 20:26:02,094 | INFO     | intersect: 8899153660.996086
[2026-03-08 21:26:51] 2026-03-08 20:26:02,094 | INFO     | chi2: 0.003296474247827069
[2026-03-08 21:26:51] 2026-03-08 20:26:02,094 | INFO     | current memory leak: -5.02 B/s (using 73 data points, chi2=0.00)
[2026-03-08 21:26:51] 2026-03-08 20:26:02,094 | INFO     | could have reported an average CPU frequency of 3582 MHz (6 samples)
[2026-03-08 21:26:51] 2026-03-08 20:26:02,095 | INFO     | ..............................
[2026-03-08 21:26:51] 2026-03-08 20:26:02,095 | INFO     | . Timing measurements:
[2026-03-08 21:26:51] 2026-03-08 20:26:02,095 | INFO     | . get job = 0 s
[2026-03-08 21:26:51] 2026-03-08 20:26:02,095 | INFO     | . initial setup = 6 s
[2026-03-08 21:26:51] 2026-03-08 20:26:02,095 | INFO     | . payload setup = 5 s
[2026-03-08 21:26:51] 2026-03-08 20:26:02,095 | INFO     | . stage-in = 0 s
[2026-03-08 21:26:51] 2026-03-08 20:26:02,095 | INFO     | . payload execution = 4862 s
[2026-03-08 21:26:51] 2026-03-08 20:26:02,095 | INFO     | . stage-out = 0 s
[2026-03-08 21:26:51] 2026-03-08 20:26:02,095 | INFO     | . log creation = 0 s
[2026-03-08 21:26:51] 2026-03-08 20:26:02,095 | INFO     | ..............................
[2026-03-08 21:26:51] 2026-03-08 20:26:02,462 | INFO     | 
[2026-03-08 21:26:51] 2026-03-08 20:26:02,462 | INFO     | job summary report
[2026-03-08 21:26:51] 2026-03-08 20:26:02,462 | INFO     | --------------------------------------------------
[2026-03-08 21:26:51] 2026-03-08 20:26:02,462 | INFO     | PanDA job id: 7039099098
[2026-03-08 21:26:51] 2026-03-08 20:26:02,462 | INFO     | task id: 48955015
[2026-03-08 21:26:51] 2026-03-08 20:26:02,462 | INFO     | errors: (none)
[2026-03-08 21:26:51] 2026-03-08 20:26:02,462 | INFO     | status: LOG_TRANSFER = DONE 
[2026-03-08 21:26:51] 2026-03-08 20:26:02,462 | INFO     | pilot state: finished 
[2026-03-08 21:26:51] 2026-03-08 20:26:02,462 | INFO     | transexitcode: 0
[2026-03-08 21:26:51] 2026-03-08 20:26:02,462 | INFO     | exeerrorcode: 0
[2026-03-08 21:26:51] 2026-03-08 20:26:02,462 | INFO     | exeerrordiag: 
[2026-03-08 21:26:51] 2026-03-08 20:26:02,462 | INFO     | exitcode: 0
[2026-03-08 21:26:51] 2026-03-08 20:26:02,462 | INFO     | exitmsg: OK
[2026-03-08 21:26:51] 2026-03-08 20:26:02,462 | INFO     | cpuconsumptiontime: 18505 s
[2026-03-08 21:26:51] 2026-03-08 20:26:02,462 | INFO     | nevents: 400
[2026-03-08 21:26:51] 2026-03-08 20:26:02,462 | INFO     | neventsw: 0
[2026-03-08 21:26:51] 2026-03-08 20:26:02,462 | INFO     | pid: 547197
[2026-03-08 21:26:51] 2026-03-08 20:26:02,462 | INFO     | pgrp: 547197
[2026-03-08 21:26:51] 2026-03-08 20:26:02,462 | INFO     | corecount: 4
[2026-03-08 21:26:51] 2026-03-08 20:26:02,462 | INFO     | event service: False
[2026-03-08 21:26:51] 2026-03-08 20:26:02,462 | INFO     | sizes: {0: 2280040, 1: 2280246, 11: 2280274, 4871: 2306614, 4872: 2306613, 4874: 2315875, 4875: 2316013}
[2026-03-08 21:26:51] 2026-03-08 20:26:02,462 | INFO     | --------------------------------------------------
[2026-03-08 21:26:51] 2026-03-08 20:26:02,462 | INFO     | 
[2026-03-08 21:26:51] 2026-03-08 20:26:02,463 | INFO     | executing command: ls -lF /var/lib/boinc/var/slot212/slots/0
[2026-03-08 21:26:51] 2026-03-08 20:26:02,479 | INFO     | queue jobs had 0 job(s) [purged]
[2026-03-08 21:26:51] 2026-03-08 20:26:02,480 | INFO     | queue payloads had 0 job(s) [purged]
[2026-03-08 21:26:51] 2026-03-08 20:26:02,480 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-08 21:26:51] 2026-03-08 20:26:02,480 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-08 21:26:51] 2026-03-08 20:26:02,480 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-08 21:26:51] 2026-03-08 20:26:02,480 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-08 21:26:51] 2026-03-08 20:26:02,480 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-08 21:26:51] 2026-03-08 20:26:02,480 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-08 21:26:51] 2026-03-08 20:26:02,480 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-08 21:26:51] 2026-03-08 20:26:02,480 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-08 21:26:51] 2026-03-08 20:26:02,480 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-08 21:26:51] 2026-03-08 20:26:02,480 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-08 21:26:51] 2026-03-08 20:26:02,480 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-08 21:26:51] 2026-03-08 20:26:02,480 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-08 21:26:51] 2026-03-08 20:26:02,480 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-08 21:26:51] 2026-03-08 20:26:02,480 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-08 21:26:51] 2026-03-08 20:26:02,480 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-08 21:26:51] 2026-03-08 20:26:02,480 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-08 21:26:51] 2026-03-08 20:26:02,480 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-08 21:26:51] 2026-03-08 20:26:02,480 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-08 21:26:51] 2026-03-08 20:26:02,480 | INFO     | job 7039099098 has completed (purged errors)
[2026-03-08 21:26:51] 2026-03-08 20:26:02,480 | INFO     | overall cleanup function is called
[2026-03-08 21:26:51] 2026-03-08 20:26:03,487 | INFO     | --- collectZombieJob: --- 10, [547197]
[2026-03-08 21:26:51] 2026-03-08 20:26:03,488 | INFO     | zombie collector waiting for pid 547197
[2026-03-08 21:26:51] 2026-03-08 20:26:03,488 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-08 21:26:51] 2026-03-08 20:26:03,488 | INFO     | collected zombie processes
[2026-03-08 21:26:51] 2026-03-08 20:26:03,488 | INFO     | will attempt to kill all subprocesses of pid=547197
[2026-03-08 21:26:51] 2026-03-08 20:26:04,354 | WARNING  | process 547197 can no longer be monitored (due to stat problems) - aborting
[2026-03-08 21:26:51] 2026-03-08 20:26:04,711 | INFO     | process IDs to be killed: [547197] (in reverse order)
[2026-03-08 21:26:51] 2026-03-08 20:26:04,923 | INFO     | using path: /var/lib/boinc/var/slot212/slots/0/memory_monitor_summary.json (trf name=prmon)
[2026-03-08 21:26:51] 2026-03-08 20:26:04,924 | INFO     | skipping file size check of payload stdout file (/var/lib/boinc/var/slot212/slots/0/PanDA_Pilot-7039099098/payload.stdout) since it has not been created yet
[2026-03-08 21:26:51] 2026-03-08 20:26:04,924 | INFO     | executing command: df -mP /var/lib/boinc/var/slot212/slots/0
[2026-03-08 21:26:51] 2026-03-08 20:26:04,936 | INFO     | sufficient remaining disk space (20431503360 B)
[2026-03-08 21:26:51] 2026-03-08 20:26:04,936 | WARNING  | skipping size check of workdir since it has not been created yet
[2026-03-08 21:26:51] 2026-03-08 20:26:04,936 | INFO     | output file size check: skipping output file /var/lib/boinc/var/slot212/slots/0/PanDA_Pilot-7039099098/HITS.48955015._007100.pool.root.1 since it does not exist
[2026-03-08 21:26:51] 2026-03-08 20:26:04,949 | WARNING  | found no corresponding commands to process id(s)
[2026-03-08 21:26:51] 2026-03-08 20:26:04,950 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-08 21:26:51] 2026-03-08 20:26:05,010 | INFO     | did not find any defunct processes belonging to 547197
[2026-03-08 21:26:51] 2026-03-08 20:26:05,081 | INFO     | did not find any defunct processes belonging to 547197
[2026-03-08 21:26:51] 2026-03-08 20:26:05,082 | INFO     | ready for new job
[2026-03-08 21:26:51] 2026-03-08 20:26:05,082 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-08 21:26:51] 2026-03-08 20:26:05,083 | INFO     | **************************************
[2026-03-08 21:26:51] 2026-03-08 20:26:05,083 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-03-08 21:26:51] 2026-03-08 20:26:05,083 | INFO     | **************************************
[2026-03-08 21:26:51] 2026-03-08 20:26:05,083 | INFO     | 
[2026-03-08 21:26:51] 2026-03-08 20:26:05,090 | INFO     | architecture information:
[2026-03-08 21:26:51] 2026-03-08 20:26:05,094 | INFO     | executing command: cat /etc/os-release
[2026-03-08 21:26:51] 2026-03-08 20:26:05,109 | INFO     | cat /etc/os-release:
[2026-03-08 21:26:51] NAME="CentOS Linux"
[2026-03-08 21:26:51] VERSION="7 (Core)"
[2026-03-08 21:26:51] ID="centos"
[2026-03-08 21:26:51] ID_LIKE="rhel fedora"
[2026-03-08 21:26:51] VERSION_ID="7"
[2026-03-08 21:26:51] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-08 21:26:51] ANSI_COLOR="0;31"
[2026-03-08 21:26:51] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-08 21:26:51] HOME_URL="https://www.centos.org/"
[2026-03-08 21:26:51] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-08 21:26:51] 
[2026-03-08 21:26:51] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-08 21:26:51] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-08 21:26:51] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-08 21:26:51] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-08 21:26:51] 
[2026-03-08 21:26:51] 2026-03-08 20:26:05,109 | INFO     | **************************************
[2026-03-08 21:26:51] 2026-03-08 20:26:05,485 | INFO     | number of running child processes to parent process 547197: 1
[2026-03-08 21:26:51] 2026-03-08 20:26:05,485 | INFO     | maximum number of monitored processes: 6
[2026-03-08 21:26:51] 2026-03-08 20:26:05,485 | INFO     | aborting job monitoring since job object (job id=7039099098) has expired
[2026-03-08 21:26:51] 2026-03-08 20:26:05,612 | INFO     | executing command: df -mP /var/lib/boinc/var/slot212/slots/0
[2026-03-08 21:26:51] 2026-03-08 20:26:05,625 | INFO     | sufficient remaining disk space (20429406208 B)
[2026-03-08 21:26:51] 2026-03-08 20:26:05,626 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-08 21:26:51] 2026-03-08 20:26:05,626 | INFO     | current server update state: UPDATING_FINAL
[2026-03-08 21:26:51] 2026-03-08 20:26:05,626 | INFO     | update_server=False
[2026-03-08 21:26:51] 2026-03-08 20:26:05,626 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-08 21:26:51] 2026-03-08 20:26:05,626 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-08 21:26:51] 2026-03-08 20:26:05,627 | INFO     | will abort loop
[2026-03-08 21:26:51] 2026-03-08 20:26:05,647 | INFO     | all payload control threads have been joined
[2026-03-08 21:26:51] 2026-03-08 20:26:05,782 | INFO     | all job control threads have been joined
[2026-03-08 21:26:51] 2026-03-08 20:26:06,445 | INFO     | all data control threads have been joined
[2026-03-08 21:26:51] 2026-03-08 20:26:06,485 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-08 21:26:51] 2026-03-08 20:26:06,630 | INFO     | [job] retrieve thread has finished
[2026-03-08 21:26:51] 2026-03-08 20:26:06,632 | INFO     | [job] job monitor thread has finished
[2026-03-08 21:26:51] 2026-03-08 20:26:06,652 | INFO     | [payload] control thread has finished
[2026-03-08 21:26:51] 2026-03-08 20:26:06,664 | INFO     | [payload] validate_pre thread has finished
[2026-03-08 21:26:51] 2026-03-08 20:26:06,788 | INFO     | [job] control thread has finished
[2026-03-08 21:26:51] 2026-03-08 20:26:06,843 | INFO     | [data] copytool_in thread has finished
[2026-03-08 21:26:51] 2026-03-08 20:26:07,033 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-08 21:26:51] 2026-03-08 20:26:07,111 | INFO     | [payload] execute_payloads thread has finished
[2026-03-08 21:26:51] 2026-03-08 20:26:07,147 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-08 21:26:51] 2026-03-08 20:26:07,450 | INFO     | [data] control thread has finished
[2026-03-08 21:26:51] 2026-03-08 20:26:07,650 | INFO     | [payload] failed_post thread has finished
[2026-03-08 21:26:51] 2026-03-08 20:26:07,869 | INFO     | [job] validate thread has finished
[2026-03-08 21:26:51] 2026-03-08 20:26:07,878 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-08 21:26:51] 2026-03-08 20:26:08,001 | INFO     | [job] create_data_payload thread has finished
[2026-03-08 21:26:51] 2026-03-08 20:26:08,152 | INFO     | [job] queue monitor thread has finished
[2026-03-08 21:26:51] 2026-03-08 20:26:08,154 | INFO     | [payload] validate_post thread has finished
[2026-03-08 21:26:51] 2026-03-08 20:26:08,490 | INFO     | [data] copytool_out thread has finished
[2026-03-08 21:26:51] 2026-03-08 20:26:11,039 | INFO     | [data] queue_monitor thread has finished
[2026-03-08 21:26:51] 2026-03-08 20:26:34,519 | INFO     | PID=527229 has CPU usage=10.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-03-08 21:26:51] 2026-03-08 20:26:34,519 | INFO     | .. there are 50 such processes running
[2026-03-08 21:26:51] 2026-03-08 20:26:34,519 | INFO     | found 0 job(s) in 20 queues
[2026-03-08 21:26:51] 2026-03-08 20:26:34,519 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-08 21:26:51] 2026-03-08 20:26:34,519 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-08 21:26:51] 2026-03-08 20:26:44,023 | INFO     | [monitor] cgroup control has ended
[2026-03-08 21:26:51] 2026-03-08 20:26:46,130 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 22440437512000)>', '<ExcThread(monitor, started 22440124073728)>']
[2026-03-08 21:26:51] 2026-03-08 20:26:46,579 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-08 21:26:51] 2026-03-08 20:26:46,579 | INFO     | [monitor] control thread has ended
[2026-03-08 21:26:51] 2026-03-08 20:26:51,155 | INFO     | all workflow threads have been joined
[2026-03-08 21:26:51] 2026-03-08 20:26:51,155 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-08 21:26:51] 2026-03-08 20:26:51,155 | INFO     | traces error code: 0
[2026-03-08 21:26:51] 2026-03-08 20:26:51,155 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-08 21:26:51] 2026-03-08 20:26:51,356 [wrapper] ==== pilot stdout END ====
[2026-03-08 21:26:51] 2026-03-08 20:26:51,359 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-08 21:26:51] 2026-03-08 20:26:51,362 [wrapper] pilotpid: 527229
[2026-03-08 21:26:51] 2026-03-08 20:26:51,364 [wrapper] Pilot exit status: 0
[2026-03-08 21:26:51] 2026-03-08 20:26:51,371 [wrapper] pandaids: 7039099098
[2026-03-08 21:26:51] 2026-03-08 20:26:51,497 [wrapper] cleanup supervisor_pilot 1208700 527230
[2026-03-08 21:26:51] 2026-03-08 20:26:51,499 [wrapper] Test setup, not cleaning
[2026-03-08 21:26:51] 2026-03-08 20:26:51,501 [wrapper] apfmon messages muted
[2026-03-08 21:26:51] 2026-03-08 20:26:51,502 [wrapper] ==== wrapper stdout END ====
[2026-03-08 21:26:51] 2026-03-08 20:26:51,504 [wrapper] ==== wrapper stderr END ====
[2026-03-08 21:26:51]  *** Error codes and diagnostics ***
[2026-03-08 21:26:51]     "exeErrorCode": 0,
[2026-03-08 21:26:51]     "exeErrorDiag": "",
[2026-03-08 21:26:51]     "pilotErrorCode": 0,
[2026-03-08 21:26:51]     "pilotErrorDiag": "",
[2026-03-08 21:26:51]  *** Listing of results directory ***
[2026-03-08 21:26:51] total 614136
[2026-03-08 21:26:51] -rw-r--r--. 1 boinc boinc    584627 Mar  7 12:56 pilot3.tar.gz
[2026-03-08 21:26:51] -rw-r--r--. 1 boinc boinc      5111 Mar  7 12:56 queuedata.json
[2026-03-08 21:26:51] -rwx------. 1 boinc boinc     36322 Mar  7 12:56 runpilot2-wrapper.sh
[2026-03-08 21:26:51] -rw-r--r--. 1 boinc boinc       100 Mar  8 20:04 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-08 21:26:51] -rwxr-xr-x. 1 boinc boinc      7986 Mar  8 20:04 run_atlas
[2026-03-08 21:26:51] -rw-r--r--. 1 boinc boinc       105 Mar  8 20:04 job.xml
[2026-03-08 21:26:51] -rw-r--r--. 1 boinc boinc      6708 Mar  8 20:04 init_data.xml
[2026-03-08 21:26:51] -rw-r--r--. 2 boinc boinc 436996007 Mar  8 20:04 EVNT.46701403._002190.pool.root.1
[2026-03-08 21:26:51] -rw-r--r--. 2 boinc boinc     15845 Mar  8 20:04 start_atlas.sh
[2026-03-08 21:26:51] drwxrwx--x. 2 boinc boinc      4096 Mar  8 20:04 shared
[2026-03-08 21:26:51] -rw-r--r--. 2 boinc boinc    597950 Mar  8 20:04 input.tar.gz
[2026-03-08 21:26:51] -rw-r--r--. 1 boinc boinc         0 Mar  8 20:04 boinc_lockfile
[2026-03-08 21:26:51] -rw-r--r--. 1 boinc boinc      2570 Mar  8 20:04 pandaJob.out
[2026-03-08 21:26:51] -rw-------. 1 boinc boinc    999212 Mar  8 20:04 agis_schedconf.cvmfs.json
[2026-03-08 21:26:51] -rw-------. 1 boinc boinc   1511578 Mar  8 20:04 agis_ddmendpoints.agis.ALL.json
[2026-03-08 21:26:51] -rw-------. 1 boinc boinc       445 Mar  8 20:04 workernode_map.json
[2026-03-08 21:26:51] drwx------. 5 boinc boinc      4096 Mar  8 20:04 pilot3
[2026-03-08 21:26:51] -rw-------. 1 boinc boinc 185894623 Mar  8 21:25 HITS.48955015._007100.pool.root.1
[2026-03-08 21:26:51] -rw-r--r--. 1 boinc boinc       530 Mar  8 21:25 boinc_task_state.xml
[2026-03-08 21:26:51] -rw-------. 1 boinc boinc        95 Mar  8 21:25 pilot_heartbeat.json
[2026-03-08 21:26:51] -rw-------. 1 boinc boinc      1029 Mar  8 21:25 memory_monitor_summary.json
[2026-03-08 21:26:51] -rw-------. 1 boinc boinc    311392 Mar  8 21:26 log.48955015._007100.job.log.tgz.1
[2026-03-08 21:26:51] -rw-------. 1 boinc boinc      6355 Mar  8 21:26 heartbeat.json
[2026-03-08 21:26:51] -rw-r--r--. 1 boinc boinc      8192 Mar  8 21:26 boinc_mmap_file
[2026-03-08 21:26:51] -rw-r--r--. 1 boinc boinc        27 Mar  8 21:26 wrapper_checkpoint.txt
[2026-03-08 21:26:51] -rw-------. 1 boinc boinc      5119 Mar  8 21:26 pilotlog.txt
[2026-03-08 21:26:51] -rw-------. 1 boinc boinc    713575 Mar  8 21:26 log.48955015._007100.job.log.1
[2026-03-08 21:26:51] -rw-------. 1 boinc boinc       357 Mar  8 21:26 output.list
[2026-03-08 21:26:51] -rw-r--r--. 1 boinc boinc       620 Mar  8 21:26 runtime_log
[2026-03-08 21:26:51] -rw-------. 1 boinc boinc   1044480 Mar  8 21:26 result.tar.gz
[2026-03-08 21:26:51] -rw-------. 1 boinc boinc       662 Mar  8 21:26 zxqKDmIS5I9nsSi4ap6QjLDmwznN0nGgGQJmIVkRDmHkVLDmhMmlTn.diag
[2026-03-08 21:26:51] -rw-r--r--. 1 boinc boinc      9221 Mar  8 21:26 runtime_log.err
[2026-03-08 21:26:51] -rw-r--r--. 1 boinc boinc     21795 Mar  8 21:26 stderr.txt
[2026-03-08 21:26:51] HITS file was successfully produced:
[2026-03-08 21:26:51] -rw-------. 1 boinc boinc 185894623 Mar  8 21:25 shared/HITS.pool.root.1
[2026-03-08 21:26:51]  *** Contents of shared directory: ***
[2026-03-08 21:26:51] total 609924
[2026-03-08 21:26:51] -rw-r--r--. 2 boinc boinc 436996007 Mar  8 20:04 ATLAS.root_0
[2026-03-08 21:26:51] -rw-r--r--. 2 boinc boinc     15845 Mar  8 20:04 start_atlas.sh
[2026-03-08 21:26:51] -rw-r--r--. 2 boinc boinc    597950 Mar  8 20:04 input.tar.gz
[2026-03-08 21:26:51] -rw-------. 1 boinc boinc 185894623 Mar  8 21:25 HITS.pool.root.1
[2026-03-08 21:26:51] -rw-------. 1 boinc boinc   1044480 Mar  8 21:26 result.tar.gz
21:26:53 (516957): run_atlas exited; CPU time 18719.306223
21:26:53 (516957): called boinc_finish(0)

</stderr_txt>
]]>

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