Stderr output

<core_client_version>8.3.0</core_client_version>
<![CDATA[
<stderr_txt>
10:36:43 (1895248): wrapper (7.7.26015): starting
10:36:43 (1895248): wrapper: running run_atlas (--nthreads 4)
[2026-03-07 10:36:43] Arguments: --nthreads 4
[2026-03-07 10:36:43] Threads: 4
[2026-03-07 10:36:43] Checking for CVMFS
[2026-03-07 10:36:43] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-07 10:36:44] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-07 10:36:44] Running cvmfs_config stat atlas.cern.ch
[2026-03-07 10:36:45] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-07 10:36:45] 2.13.3.0 21737 6899 51148 157005 2 49 8632362 102400001 1832 130560 15 4811081 99.989 238997 63 http://s1bnl-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
[2026-03-07 10:36:45] CVMFS is ok
[2026-03-07 10:36:45] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-07 10:36:45] Small home clusters do not require a local http proxy but it is suggested if
[2026-03-07 10:36:45] more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
[2026-03-07 10:36:45] Further information can be found at the LHC@home message board.
[2026-03-07 10:36:45] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-07 10:36:45] Checking for apptainer binary...
[2026-03-07 10:36:45] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-07 10:36:45] Running /usr/bin/apptainer --version
[2026-03-07 10:36:45] apptainer version 1.4.5
[2026-03-07 10:36:45] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-07 10:36:45] T7810-Ubuntu
[2026-03-07 10:36:45] apptainer works
[2026-03-07 10:36:45] Set ATHENA_PROC_NUMBER=4
[2026-03-07 10:36:45] Set ATHENA_CORE_NUMBER=4
[2026-03-07 10:36:45] Starting ATLAS job with PandaID=7039083429
[2026-03-07 10:36:45] Running command: /usr/bin/apptainer exec -B /cvmfs,/home/whitlerd/Desktop/BOINC/slots/20 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-07 13:41:48]  *** The last 200 lines of the pilot log: ***
[2026-03-07 13:41:48] 2026-03-07 18:41:14,784 | INFO     | preparing for final server update for job 7039083429 in state='finished'
[2026-03-07 13:41:48] 2026-03-07 18:41:15,085 | INFO     | sent prmon JSON dictionary to logstash server (urllib method)
[2026-03-07 13:41:48] 2026-03-07 18:41:15,086 | INFO     | reading metadata from: /home/whitlerd/Desktop/BOINC/slots/20/PanDA_Pilot-7039083429/jobReport.json
[2026-03-07 13:41:48] 2026-03-07 18:41:15,089 | INFO     | added worker_node to metadata from /home/whitlerd/Desktop/BOINC/slots/20/workernode_map.json
[2026-03-07 13:41:48] 2026-03-07 18:41:15,089 | INFO     | this job has now completed (state=finished)
[2026-03-07 13:41:48] 2026-03-07 18:41:15,089 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-03-07 13:41:48] 2026-03-07 18:41:15,089 | INFO     | log transfer has been attempted: DONE
[2026-03-07 13:41:48] 2026-03-07 18:41:15,089 | INFO     | job 7039083429 has finished - writing final server update
[2026-03-07 13:41:48] 2026-03-07 18:41:15,090 | INFO     | total number of processed events: 400 (read)
[2026-03-07 13:41:48] 2026-03-07 18:41:15,105 | INFO     | using path: /home/whitlerd/Desktop/BOINC/slots/20/PanDA_Pilot-7039083429/memory_monitor_summary.json (trf name=prmon)
[2026-03-07 13:41:48] 2026-03-07 18:41:15,106 | INFO     | extracted standard info from prmon json
[2026-03-07 13:41:48] 2026-03-07 18:41:15,106 | INFO     | extracted standard memory fields from prmon json
[2026-03-07 13:41:48] 2026-03-07 18:41:15,106 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-03-07 13:41:48] 2026-03-07 18:41:15,107 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-03-07 13:41:48] 2026-03-07 18:41:15,107 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-03-07 13:41:48] 2026-03-07 18:41:15,111 | INFO     | fitting pss+swap vs Time
[2026-03-07 13:41:48] 2026-03-07 18:41:15,111 | INFO     | sum of square deviations: 1838657730.0
[2026-03-07 13:41:48] 2026-03-07 18:41:15,112 | INFO     | sum of deviations: -15306981076.0
[2026-03-07 13:41:48] 2026-03-07 18:41:15,113 | INFO     | mean x: 1772903336.0
[2026-03-07 13:41:48] 2026-03-07 18:41:15,113 | INFO     | mean y: 2347696.5690607736
[2026-03-07 13:41:48] 2026-03-07 18:41:15,113 | INFO     | intersect: 14761917882.440071
[2026-03-07 13:41:48] 2026-03-07 18:41:15,113 | INFO     | chi2: 1.395356569329573
[2026-03-07 13:41:48] 2026-03-07 18:41:15,114 | INFO     | sum of square deviations: 1690450300.0
[2026-03-07 13:41:48] 2026-03-07 18:41:15,115 | INFO     | sum of deviations: -14506038265.999998
[2026-03-07 13:41:48] 2026-03-07 18:41:15,115 | INFO     | time since job start (11051s) is within the limit (349056.0s)
[2026-03-07 13:41:48] 2026-03-07 18:41:15,115 | INFO     | mean x: 1772903183.5
[2026-03-07 13:41:48] 2026-03-07 18:41:15,116 | INFO     | mean y: 2348521.3863636362
[2026-03-07 13:41:48] 2026-03-07 18:41:15,116 | INFO     | intersect: 15215928844.785528
[2026-03-07 13:41:48] 2026-03-07 18:41:15,116 | INFO     | chi2: 1.3940781237299438
[2026-03-07 13:41:48] 2026-03-07 18:41:15,117 | INFO     | current chi2=1.3940781237299438 (change=0.09162142693344415 %)
[2026-03-07 13:41:48] 2026-03-07 18:41:15,117 | INFO     | right removable region: 175
[2026-03-07 13:41:48] 2026-03-07 18:41:15,117 | INFO     | sum of square deviations: 1690450300.0
[2026-03-07 13:41:48] 2026-03-07 18:41:15,118 | INFO     | sum of deviations: -34755231229.0
[2026-03-07 13:41:48] 2026-03-07 18:41:15,118 | INFO     | mean x: 1772903488.5
[2026-03-07 13:41:48] 2026-03-07 18:41:15,118 | INFO     | mean y: 2367324.7386363638
[2026-03-07 13:41:48] 2026-03-07 18:41:15,119 | INFO     | intersect: 36452815284.976364
[2026-03-07 13:41:48] 2026-03-07 18:41:15,119 | INFO     | chi2: 0.09611776725467831
[2026-03-07 13:41:48] 2026-03-07 18:41:15,119 | INFO     | current chi2=0.09611776725467831 (change=93.11159818447983 %)
[2026-03-07 13:41:48] 2026-03-07 18:41:15,120 | INFO     | sum of square deviations: 1550429070.0
[2026-03-07 13:41:48] 2026-03-07 18:41:15,121 | INFO     | sum of deviations: -31070533061.0
[2026-03-07 13:41:48] 2026-03-07 18:41:15,121 | INFO     | mean x: 1772903641.0
[2026-03-07 13:41:48] 2026-03-07 18:41:15,121 | INFO     | mean y: 2363321.3859649124
[2026-03-07 13:41:48] 2026-03-07 18:41:15,121 | INFO     | intersect: 35531277386.224655
[2026-03-07 13:41:48] 2026-03-07 18:41:15,121 | INFO     | chi2: 0.09473875809580316
[2026-03-07 13:41:48] 2026-03-07 18:41:15,122 | INFO     | current chi2=0.09473875809580316 (change=1.4347078571033176 %)
[2026-03-07 13:41:48] 2026-03-07 18:41:15,122 | INFO     | left removable region: 20
[2026-03-07 13:41:48] 2026-03-07 18:41:15,122 | INFO     | sum of square deviations: 1154663510.0
[2026-03-07 13:41:48] 2026-03-07 18:41:15,123 | INFO     | sum of deviations: -22819584427.999992
[2026-03-07 13:41:48] 2026-03-07 18:41:15,123 | INFO     | mean x: 1772903763.0
[2026-03-07 13:41:48] 2026-03-07 18:41:15,123 | INFO     | mean y: 2356164.812903226
[2026-03-07 13:41:48] 2026-03-07 18:41:15,123 | INFO     | intersect: 35040206371.4912
[2026-03-07 13:41:48] 2026-03-07 18:41:15,124 | INFO     | chi2: 0.08803142091315519
[2026-03-07 13:41:48] 2026-03-07 18:41:15,124 | INFO     | current memory leak: -19.76 B/s (using 155 data points, chi2=0.09)
[2026-03-07 13:41:48] 2026-03-07 18:41:15,124 | INFO     | could have reported an average CPU frequency of 2788 MHz (10 samples)
[2026-03-07 13:41:48] 2026-03-07 18:41:15,125 | INFO     | ..............................
[2026-03-07 13:41:48] 2026-03-07 18:41:15,125 | INFO     | . Timing measurements:
[2026-03-07 13:41:48] 2026-03-07 18:41:15,125 | INFO     | . get job = 0 s
[2026-03-07 13:41:48] 2026-03-07 18:41:15,125 | INFO     | . initial setup = 7 s
[2026-03-07 13:41:48] 2026-03-07 18:41:15,125 | INFO     | . payload setup = 5 s
[2026-03-07 13:41:48] 2026-03-07 18:41:15,125 | INFO     | . stage-in = 0 s
[2026-03-07 13:41:48] 2026-03-07 18:41:15,125 | INFO     | . payload execution = 11023 s
[2026-03-07 13:41:48] 2026-03-07 18:41:15,125 | INFO     | . stage-out = 2 s
[2026-03-07 13:41:48] 2026-03-07 18:41:15,126 | INFO     | . log creation = 0 s
[2026-03-07 13:41:48] 2026-03-07 18:41:15,126 | INFO     | ..............................
[2026-03-07 13:41:48] 2026-03-07 18:41:15,230 | INFO     | 
[2026-03-07 13:41:48] 2026-03-07 18:41:15,231 | INFO     | job summary report
[2026-03-07 13:41:48] 2026-03-07 18:41:15,231 | INFO     | --------------------------------------------------
[2026-03-07 13:41:48] 2026-03-07 18:41:15,231 | INFO     | PanDA job id: 7039083429
[2026-03-07 13:41:48] 2026-03-07 18:41:15,231 | INFO     | task id: 48955006
[2026-03-07 13:41:48] 2026-03-07 18:41:15,231 | INFO     | errors: (none)
[2026-03-07 13:41:48] 2026-03-07 18:41:15,231 | INFO     | status: LOG_TRANSFER = DONE 
[2026-03-07 13:41:48] 2026-03-07 18:41:15,231 | INFO     | pilot state: finished 
[2026-03-07 13:41:48] 2026-03-07 18:41:15,231 | INFO     | transexitcode: 0
[2026-03-07 13:41:48] 2026-03-07 18:41:15,231 | INFO     | exeerrorcode: 0
[2026-03-07 13:41:48] 2026-03-07 18:41:15,232 | INFO     | exeerrordiag: 
[2026-03-07 13:41:48] 2026-03-07 18:41:15,232 | INFO     | exitcode: 0
[2026-03-07 13:41:48] 2026-03-07 18:41:15,232 | INFO     | exitmsg: OK
[2026-03-07 13:41:48] 2026-03-07 18:41:15,232 | INFO     | cpuconsumptiontime: 42644 s
[2026-03-07 13:41:48] 2026-03-07 18:41:15,232 | INFO     | nevents: 400
[2026-03-07 13:41:48] 2026-03-07 18:41:15,232 | INFO     | neventsw: 0
[2026-03-07 13:41:48] 2026-03-07 18:41:15,232 | INFO     | pid: 1904376
[2026-03-07 13:41:48] 2026-03-07 18:41:15,232 | INFO     | pgrp: 1904376
[2026-03-07 13:41:48] 2026-03-07 18:41:15,232 | INFO     | corecount: 4
[2026-03-07 13:41:48] 2026-03-07 18:41:15,232 | INFO     | event service: False
[2026-03-07 13:41:48] 2026-03-07 18:41:15,232 | INFO     | sizes: {0: 2295820, 11: 2295820, 11032: 2325035, 11035: 2334063, 11038: 2334119, 11039: 2334313}
[2026-03-07 13:41:48] 2026-03-07 18:41:15,233 | INFO     | --------------------------------------------------
[2026-03-07 13:41:48] 2026-03-07 18:41:15,233 | INFO     | 
[2026-03-07 13:41:48] 2026-03-07 18:41:15,233 | INFO     | executing command: ls -lF /home/whitlerd/Desktop/BOINC/slots/20
[2026-03-07 13:41:48] 2026-03-07 18:41:15,254 | INFO     | queue jobs had 0 job(s) [purged]
[2026-03-07 13:41:48] 2026-03-07 18:41:15,255 | INFO     | queue payloads had 0 job(s) [purged]
[2026-03-07 13:41:48] 2026-03-07 18:41:15,255 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-07 13:41:48] 2026-03-07 18:41:15,255 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-07 13:41:48] 2026-03-07 18:41:15,255 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-07 13:41:48] 2026-03-07 18:41:15,255 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-07 13:41:48] 2026-03-07 18:41:15,255 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-07 13:41:48] 2026-03-07 18:41:15,255 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-07 13:41:48] 2026-03-07 18:41:15,255 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-07 13:41:48] 2026-03-07 18:41:15,255 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-07 13:41:48] 2026-03-07 18:41:15,256 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-07 13:41:48] 2026-03-07 18:41:15,256 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-07 13:41:48] 2026-03-07 18:41:15,256 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-07 13:41:48] 2026-03-07 18:41:15,256 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-07 13:41:48] 2026-03-07 18:41:15,256 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-07 13:41:48] 2026-03-07 18:41:15,256 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-07 13:41:48] 2026-03-07 18:41:15,256 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-07 13:41:48] 2026-03-07 18:41:15,256 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-07 13:41:48] 2026-03-07 18:41:15,256 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-07 13:41:48] 2026-03-07 18:41:15,256 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-07 13:41:48] 2026-03-07 18:41:15,257 | INFO     | job 7039083429 has completed (purged errors)
[2026-03-07 13:41:48] 2026-03-07 18:41:15,257 | INFO     | overall cleanup function is called
[2026-03-07 13:41:48] 2026-03-07 18:41:16,265 | INFO     | --- collectZombieJob: --- 10, [1904376]
[2026-03-07 13:41:48] 2026-03-07 18:41:16,265 | INFO     | zombie collector waiting for pid 1904376
[2026-03-07 13:41:48] 2026-03-07 18:41:16,265 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-07 13:41:48] 2026-03-07 18:41:16,265 | INFO     | collected zombie processes
[2026-03-07 13:41:48] 2026-03-07 18:41:16,266 | INFO     | will attempt to kill all subprocesses of pid=1904376
[2026-03-07 13:41:48] 2026-03-07 18:41:16,602 | INFO     | process IDs to be killed: [1904376] (in reverse order)
[2026-03-07 13:41:48] 2026-03-07 18:41:16,692 | WARNING  | found no corresponding commands to process id(s)
[2026-03-07 13:41:48] 2026-03-07 18:41:16,692 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-07 13:41:48] 2026-03-07 18:41:16,701 | INFO     | did not find any defunct processes belonging to 1904376
[2026-03-07 13:41:48] 2026-03-07 18:41:16,710 | INFO     | did not find any defunct processes belonging to 1904376
[2026-03-07 13:41:48] 2026-03-07 18:41:16,710 | INFO     | ready for new job
[2026-03-07 13:41:48] 2026-03-07 18:41:16,710 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-07 13:41:48] 2026-03-07 18:41:16,712 | INFO     | **************************************
[2026-03-07 13:41:48] 2026-03-07 18:41:16,712 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-03-07 13:41:48] 2026-03-07 18:41:16,712 | INFO     | **************************************
[2026-03-07 13:41:48] 2026-03-07 18:41:16,712 | INFO     | 
[2026-03-07 13:41:48] 2026-03-07 18:41:16,714 | INFO     | architecture information:
[2026-03-07 13:41:48] 2026-03-07 18:41:16,715 | INFO     | executing command: cat /etc/os-release
[2026-03-07 13:41:48] 2026-03-07 18:41:16,726 | INFO     | cat /etc/os-release:
[2026-03-07 13:41:48] NAME="CentOS Linux"
[2026-03-07 13:41:48] VERSION="7 (Core)"
[2026-03-07 13:41:48] ID="centos"
[2026-03-07 13:41:48] ID_LIKE="rhel fedora"
[2026-03-07 13:41:48] VERSION_ID="7"
[2026-03-07 13:41:48] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-07 13:41:48] ANSI_COLOR="0;31"
[2026-03-07 13:41:48] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-07 13:41:48] HOME_URL="https://www.centos.org/"
[2026-03-07 13:41:48] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-07 13:41:48] 
[2026-03-07 13:41:48] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-07 13:41:48] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-07 13:41:48] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-07 13:41:48] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-07 13:41:48] 
[2026-03-07 13:41:48] 2026-03-07 18:41:16,727 | INFO     | **************************************
[2026-03-07 13:41:48] 2026-03-07 18:41:17,229 | INFO     | executing command: df -mP /home/whitlerd/Desktop/BOINC/slots/20
[2026-03-07 13:41:48] 2026-03-07 18:41:17,246 | INFO     | sufficient remaining disk space (400398745600 B)
[2026-03-07 13:41:48] 2026-03-07 18:41:17,246 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-07 13:41:48] 2026-03-07 18:41:17,246 | INFO     | current server update state: UPDATING_FINAL
[2026-03-07 13:41:48] 2026-03-07 18:41:17,247 | INFO     | update_server=False
[2026-03-07 13:41:48] 2026-03-07 18:41:17,247 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-07 13:41:48] 2026-03-07 18:41:17,247 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-07 13:41:48] 2026-03-07 18:41:17,247 | INFO     | aborting loop
[2026-03-07 13:41:48] 2026-03-07 18:41:17,248 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-07 13:41:48] 2026-03-07 18:41:17,523 | INFO     | all data control threads have been joined
[2026-03-07 13:41:48] 2026-03-07 18:41:17,527 | INFO     | all job control threads have been joined
[2026-03-07 13:41:48] 2026-03-07 18:41:17,827 | INFO     | all payload control threads have been joined
[2026-03-07 13:41:48] 2026-03-07 18:41:18,252 | INFO     | [job] job monitor thread has finished
[2026-03-07 13:41:48] 2026-03-07 18:41:18,253 | INFO     | [job] retrieve thread has finished
[2026-03-07 13:41:48] 2026-03-07 18:41:18,410 | INFO     | [job] validate thread has finished
[2026-03-07 13:41:48] 2026-03-07 18:41:18,483 | INFO     | [payload] execute_payloads thread has finished
[2026-03-07 13:41:48] 2026-03-07 18:41:18,528 | INFO     | [data] control thread has finished
[2026-03-07 13:41:48] 2026-03-07 18:41:18,532 | INFO     | [job] control thread has finished
[2026-03-07 13:41:48] 2026-03-07 18:41:18,762 | INFO     | [job] create_data_payload thread has finished
[2026-03-07 13:41:48] 2026-03-07 18:41:18,786 | INFO     | [payload] validate_pre thread has finished
[2026-03-07 13:41:48] 2026-03-07 18:41:18,833 | INFO     | [payload] control thread has finished
[2026-03-07 13:41:48] 2026-03-07 18:41:19,090 | INFO     | [data] copytool_in thread has finished
[2026-03-07 13:41:48] 2026-03-07 18:41:19,189 | INFO     | [payload] validate_post thread has finished
[2026-03-07 13:41:48] 2026-03-07 18:41:19,253 | INFO     | [data] copytool_out thread has finished
[2026-03-07 13:41:48] 2026-03-07 18:41:19,762 | INFO     | [payload] failed_post thread has finished
[2026-03-07 13:41:48] 2026-03-07 18:41:19,789 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-07 13:41:48] 2026-03-07 18:41:20,241 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-07 13:41:48] 2026-03-07 18:41:21,246 | INFO     | [job] queue monitor thread has finished
[2026-03-07 13:41:48] 2026-03-07 18:41:21,752 | INFO     | [monitor] cgroup control has ended
[2026-03-07 13:41:48] 2026-03-07 18:41:23,795 | INFO     | [data] queue_monitor thread has finished
[2026-03-07 13:41:48] 2026-03-07 18:41:27,402 | INFO     | job.realtimelogging is not enabled
[2026-03-07 13:41:48] 2026-03-07 18:41:28,407 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-07 13:41:48] 2026-03-07 18:41:30,068 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 135340627756864)>', '<ExcThread(monitor, started 135339922421504)>']
[2026-03-07 13:41:48] 2026-03-07 18:41:35,094 | INFO     | all workflow threads have been joined
[2026-03-07 13:41:48] 2026-03-07 18:41:35,094 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-07 13:41:48] 2026-03-07 18:41:35,094 | INFO     | traces error code: 0
[2026-03-07 13:41:48] 2026-03-07 18:41:35,094 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-07 13:41:48] 2026-03-07 18:41:48,621 | INFO     | PID=1899611 has CPU usage=4.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-03-07 13:41:48] 2026-03-07 18:41:48,621 | INFO     | .. there are 4 such processes running
[2026-03-07 13:41:48] 2026-03-07 18:41:48,622 | INFO     | found 0 job(s) in 20 queues
[2026-03-07 13:41:48] 2026-03-07 18:41:48,622 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-07 13:41:48] 2026-03-07 18:41:48,622 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-07 13:41:48] 2026-03-07 18:41:48,622 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-07 13:41:48] 2026-03-07 18:41:48,622 | INFO     | [monitor] control thread has ended
[2026-03-07 13:41:48] 2026-03-07 18:41:48,796 [wrapper] ==== pilot stdout END ====
[2026-03-07 13:41:48] 2026-03-07 18:41:48,799 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-07 13:41:48] 2026-03-07 18:41:48,802 [wrapper] pilotpid: 1899611
[2026-03-07 13:41:48] 2026-03-07 18:41:48,805 [wrapper] Pilot exit status: 0
[2026-03-07 13:41:48] 2026-03-07 18:41:48,816 [wrapper] pandaids: 7039083429
[2026-03-07 13:41:48] 2026-03-07 18:41:48,883 [wrapper] cleanup supervisor_pilot 1943046 1899612
[2026-03-07 13:41:48] 2026-03-07 18:41:48,886 [wrapper] Test setup, not cleaning
[2026-03-07 13:41:48] 2026-03-07 18:41:48,893 [wrapper] apfmon messages muted
[2026-03-07 13:41:48] 2026-03-07 18:41:48,896 [wrapper] ==== wrapper stdout END ====
[2026-03-07 13:41:48] 2026-03-07 18:41:48,905 [wrapper] ==== wrapper stderr END ====
[2026-03-07 13:41:48]  *** Error codes and diagnostics ***
[2026-03-07 13:41:48]     "exeErrorCode": 0,
[2026-03-07 13:41:48]     "exeErrorDiag": "",
[2026-03-07 13:41:48]     "pilotErrorCode": 0,
[2026-03-07 13:41:48]     "pilotErrorDiag": "",
[2026-03-07 13:41:48]  *** Listing of results directory ***
[2026-03-07 13:41:48] total 617696
[2026-03-07 13:41:48] -rw-r--r-- 1 whitlerd whitlerd      5111 Mar  7 06:17 queuedata.json
[2026-03-07 13:41:48] -rwx------ 1 whitlerd whitlerd     36322 Mar  7 06:17 runpilot2-wrapper.sh
[2026-03-07 13:41:48] -rw-r--r-- 1 whitlerd whitlerd    584627 Mar  7 06:18 pilot3.tar.gz
[2026-03-07 13:41:48] -rw-rw-r-- 1 whitlerd whitlerd       100 Mar  7 10:36 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-07 13:41:48] -rwxr-xr-x 1 whitlerd whitlerd      7986 Mar  7 10:36 run_atlas
[2026-03-07 13:41:48] -rw-rw-r-- 1 whitlerd whitlerd       105 Mar  7 10:36 job.xml
[2026-03-07 13:41:48] -rw-r--r-- 2 whitlerd whitlerd 436637019 Mar  7 10:36 EVNT.46701403._000324.pool.root.1
[2026-03-07 13:41:48] -rw-r--r-- 2 whitlerd whitlerd     15845 Mar  7 10:36 start_atlas.sh
[2026-03-07 13:41:48] drwxrwx--x 2 whitlerd whitlerd      4096 Mar  7 10:36 shared
[2026-03-07 13:41:48] -rw-r--r-- 2 whitlerd whitlerd    597959 Mar  7 10:36 input.tar.gz
[2026-03-07 13:41:48] -rw-rw-r-- 1 whitlerd whitlerd      9127 Mar  7 10:36 init_data.xml
[2026-03-07 13:41:48] -rw-rw-r-- 1 whitlerd whitlerd         0 Mar  7 10:36 boinc_setup_complete
[2026-03-07 13:41:48] -rw-rw-r-- 1 whitlerd whitlerd         0 Mar  7 10:36 boinc_lockfile
[2026-03-07 13:41:48] -rw-rw-r-- 1 whitlerd whitlerd      2564 Mar  7 10:36 pandaJob.out
[2026-03-07 13:41:48] -rw------- 1 whitlerd whitlerd    999177 Mar  7 10:36 agis_schedconf.cvmfs.json
[2026-03-07 13:41:48] -rw------- 1 whitlerd whitlerd       434 Mar  7 10:37 workernode_map.json
[2026-03-07 13:41:48] drwx------ 5 whitlerd whitlerd      4096 Mar  7 10:37 pilot3
[2026-03-07 13:41:48] -rw------- 1 whitlerd whitlerd 188030502 Mar  7 13:40 HITS.48955006._016182.pool.root.1
[2026-03-07 13:41:48] -rw-rw-r-- 1 whitlerd whitlerd       531 Mar  7 13:40 boinc_task_state.xml
[2026-03-07 13:41:48] -rw------- 1 whitlerd whitlerd        95 Mar  7 13:40 pilot_heartbeat.json
[2026-03-07 13:41:48] -rw------- 1 whitlerd whitlerd      1042 Mar  7 13:41 memory_monitor_summary.json
[2026-03-07 13:41:48] -rw------- 1 whitlerd whitlerd   1521291 Mar  7 13:41 agis_ddmendpoints.agis.ALL.json
[2026-03-07 13:41:48] -rw------- 1 whitlerd whitlerd    378300 Mar  7 13:41 log.48955006._016182.job.log.tgz.1
[2026-03-07 13:41:48] -rw------- 1 whitlerd whitlerd      6353 Mar  7 13:41 heartbeat.json
[2026-03-07 13:41:48] -rw-rw-r-- 1 whitlerd whitlerd      8192 Mar  7 13:41 boinc_mmap_file
[2026-03-07 13:41:48] -rw-rw-r-- 1 whitlerd whitlerd        28 Mar  7 13:41 wrapper_checkpoint.txt
[2026-03-07 13:41:48] -rw------- 1 whitlerd whitlerd       822 Mar  7 13:41 pilotlog.txt
[2026-03-07 13:41:48] -rw------- 1 whitlerd whitlerd   1580737 Mar  7 13:41 log.48955006._016182.job.log.1
[2026-03-07 13:41:48] -rw------- 1 whitlerd whitlerd       357 Mar  7 13:41 output.list
[2026-03-07 13:41:48] -rw-rw-r-- 1 whitlerd whitlerd       620 Mar  7 13:41 runtime_log
[2026-03-07 13:41:48] -rw------- 1 whitlerd whitlerd   1976320 Mar  7 13:41 result.tar.gz
[2026-03-07 13:41:48] -rw-rw-r-- 1 whitlerd whitlerd      9036 Mar  7 13:41 runtime_log.err
[2026-03-07 13:41:48] -rw------- 1 whitlerd whitlerd       650 Mar  7 13:41 DHZNDmCq4I9n9Rq4apOajLDm4fhM0noT9bVooX4SDmdNTLDm1qFstm.diag
[2026-03-07 13:41:48] -rw-rw-r-- 1 whitlerd whitlerd     21399 Mar  7 13:41 stderr.txt
[2026-03-07 13:41:48] HITS file was successfully produced:
[2026-03-07 13:41:48] -rw------- 1 whitlerd whitlerd 188030502 Mar  7 13:40 shared/HITS.pool.root.1
[2026-03-07 13:41:48]  *** Contents of shared directory: ***
[2026-03-07 13:41:48] total 612568
[2026-03-07 13:41:48] -rw-r--r-- 2 whitlerd whitlerd 436637019 Mar  7 10:36 ATLAS.root_0
[2026-03-07 13:41:48] -rw-r--r-- 2 whitlerd whitlerd     15845 Mar  7 10:36 start_atlas.sh
[2026-03-07 13:41:48] -rw-r--r-- 2 whitlerd whitlerd    597959 Mar  7 10:36 input.tar.gz
[2026-03-07 13:41:48] -rw------- 1 whitlerd whitlerd 188030502 Mar  7 13:40 HITS.pool.root.1
[2026-03-07 13:41:48] -rw------- 1 whitlerd whitlerd   1976320 Mar  7 13:41 result.tar.gz
13:41:50 (1895248): run_atlas exited; CPU time 43092.753541
13:41:50 (1895248): called boinc_finish(0)

</stderr_txt>
]]>

©2026 CERN