Stderr output

<core_client_version>8.3.0</core_client_version>
<![CDATA[
<stderr_txt>
09:52:46 (2619579): wrapper (7.7.26015): starting
09:52:46 (2619579): wrapper: running run_atlas (--nthreads 4)
[2026-03-07 09:52:46] Arguments: --nthreads 4
[2026-03-07 09:52:46] Threads: 4
[2026-03-07 09:52:46] Checking for CVMFS
[2026-03-07 09:52:46] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-07 09:52:47] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-07 09:52:47] Running cvmfs_config stat atlas.cern.ch
[2026-03-07 09:52:47] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-07 09:52:47] 2.13.3.0 9162 7239 51128 157003 3 50 3849485 4096000 1832 130560 2 6117082 99.991 250897 76 http://s1bnl-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
[2026-03-07 09:52:47] CVMFS is ok
[2026-03-07 09:52:47] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-07 09:52:47] Small home clusters do not require a local http proxy but it is suggested if
[2026-03-07 09:52:47] more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
[2026-03-07 09:52:47] Further information can be found at the LHC@home message board.
[2026-03-07 09:52:47] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-07 09:52:47] Checking for apptainer binary...
[2026-03-07 09:52:47] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-07 09:52:47] Running /usr/bin/apptainer --version
[2026-03-07 09:52:47] apptainer version 1.4.5
[2026-03-07 09:52:47] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-07 09:52:48] SETI64-Ubuntu
[2026-03-07 09:52:48] apptainer works
[2026-03-07 09:52:48] Set ATHENA_PROC_NUMBER=4
[2026-03-07 09:52:48] Set ATHENA_CORE_NUMBER=4
[2026-03-07 09:52:48] Starting ATLAS job with PandaID=7039076202
[2026-03-07 09:52:48] Running command: /usr/bin/apptainer exec -B /cvmfs,/home/whitlerd/Desktop/BOINC/slots/72 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-07 12:17:42]  *** The last 200 lines of the pilot log: ***
[2026-03-07 12:17:42] 2026-03-07 17:17:08,904 | INFO     | using path: /home/whitlerd/Desktop/BOINC/slots/72/PanDA_Pilot-7039076202/memory_monitor_summary.json (trf name=prmon)
[2026-03-07 12:17:42] 2026-03-07 17:17:08,905 | INFO     | extracted standard info from prmon json
[2026-03-07 12:17:42] 2026-03-07 17:17:08,905 | INFO     | extracted standard memory fields from prmon json
[2026-03-07 12:17:42] 2026-03-07 17:17:08,905 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-03-07 12:17:42] 2026-03-07 17:17:08,905 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-03-07 12:17:42] 2026-03-07 17:17:08,906 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-03-07 12:17:42] 2026-03-07 17:17:08,909 | INFO     | fitting pss+swap vs Time
[2026-03-07 12:17:42] 2026-03-07 17:17:08,909 | INFO     | sum of square deviations: 887813855.5
[2026-03-07 12:17:42] 2026-03-07 17:17:08,910 | INFO     | sum of deviations: -2206525976.999997
[2026-03-07 12:17:42] 2026-03-07 17:17:08,910 | INFO     | mean x: 1772899512.5
[2026-03-07 12:17:42] 2026-03-07 17:17:08,910 | INFO     | mean y: 2299697.352112676
[2026-03-07 12:17:42] 2026-03-07 17:17:08,910 | INFO     | intersect: 4408571129.936081
[2026-03-07 12:17:42] 2026-03-07 17:17:08,910 | INFO     | chi2: 1.9597689109471705
[2026-03-07 12:17:42] 2026-03-07 17:17:08,911 | INFO     | sum of square deviations: 797291228.0
[2026-03-07 12:17:42] 2026-03-07 17:17:08,911 | INFO     | sum of deviations: 5782950548.000005
[2026-03-07 12:17:42] 2026-03-07 17:17:08,911 | INFO     | mean x: 1772899360.0
[2026-03-07 12:17:42] 2026-03-07 17:17:08,912 | INFO     | mean y: 2312772.97080292
[2026-03-07 12:17:42] 2026-03-07 17:17:08,912 | INFO     | intersect: -12856964948.144245
[2026-03-07 12:17:42] 2026-03-07 17:17:08,912 | INFO     | chi2: 1.3052048721238698
[2026-03-07 12:17:42] 2026-03-07 17:17:08,912 | INFO     | current chi2=1.3052048721238698 (change=33.40006238321972 %)
[2026-03-07 12:17:42] 2026-03-07 17:17:08,912 | INFO     | sum of square deviations: 713140813.0
[2026-03-07 12:17:42] 2026-03-07 17:17:08,913 | INFO     | sum of deviations: 5503082609.0
[2026-03-07 12:17:42] 2026-03-07 17:17:08,913 | INFO     | mean x: 1772899207.5
[2026-03-07 12:17:42] 2026-03-07 17:17:08,913 | INFO     | mean y: 2312265.5606060605
[2026-03-07 12:17:42] 2026-03-07 17:17:08,913 | INFO     | intersect: -13678591447.214464
[2026-03-07 12:17:42] 2026-03-07 17:17:08,913 | INFO     | chi2: 1.306304465766574
[2026-03-07 12:17:42] 2026-03-07 17:17:08,914 | INFO     | current chi2=1.306304465766574 (change=-0.08424682332935178 %)
[2026-03-07 12:17:42] 2026-03-07 17:17:08,914 | INFO     | right removable region: 131
[2026-03-07 12:17:42] 2026-03-07 17:17:08,914 | INFO     | sum of square deviations: 797291228.0
[2026-03-07 12:17:42] 2026-03-07 17:17:08,915 | INFO     | sum of deviations: -16763089567.0
[2026-03-07 12:17:42] 2026-03-07 17:17:08,915 | INFO     | mean x: 1772899665.0
[2026-03-07 12:17:42] 2026-03-07 17:17:08,915 | INFO     | mean y: 2323636.9124087594
[2026-03-07 12:17:42] 2026-03-07 17:17:08,915 | INFO     | intersect: 37277631371.389694
[2026-03-07 12:17:42] 2026-03-07 17:17:08,915 | INFO     | chi2: 0.7220328080878207
[2026-03-07 12:17:42] 2026-03-07 17:17:08,915 | INFO     | current chi2=0.7220328080878207 (change=63.15724756859945 %)
[2026-03-07 12:17:42] 2026-03-07 17:17:08,916 | INFO     | sum of square deviations: 713140813.0
[2026-03-07 12:17:42] 2026-03-07 17:17:08,916 | INFO     | sum of deviations: -13520318922.5
[2026-03-07 12:17:42] 2026-03-07 17:17:08,917 | INFO     | mean x: 1772899817.5
[2026-03-07 12:17:42] 2026-03-07 17:17:08,917 | INFO     | mean y: 2317749.3863636362
[2026-03-07 12:17:42] 2026-03-07 17:17:08,917 | INFO     | intersect: 33614432654.724205
[2026-03-07 12:17:42] 2026-03-07 17:17:08,917 | INFO     | chi2: 0.7137683370329928
[2026-03-07 12:17:42] 2026-03-07 17:17:08,917 | INFO     | current chi2=0.7137683370329928 (change=1.1446115692048517 %)
[2026-03-07 12:17:42] 2026-03-07 17:17:08,917 | INFO     | left removable region: 20
[2026-03-07 12:17:42] 2026-03-07 17:17:08,917 | INFO     | sum of square deviations: 424045160.0
[2026-03-07 12:17:42] 2026-03-07 17:17:08,918 | INFO     | sum of deviations: -701612179.0000001
[2026-03-07 12:17:42] 2026-03-07 17:17:08,918 | INFO     | mean x: 1772899787.0
[2026-03-07 12:17:42] 2026-03-07 17:17:08,918 | INFO     | mean y: 2321116.5585585586
[2026-03-07 12:17:42] 2026-03-07 17:17:08,918 | INFO     | intersect: 2935706991.557594
[2026-03-07 12:17:42] 2026-03-07 17:17:08,919 | INFO     | chi2: 0.008064354717774459
[2026-03-07 12:17:42] 2026-03-07 17:17:08,919 | INFO     | current memory leak: -1.65 B/s (using 111 data points, chi2=0.01)
[2026-03-07 12:17:42] 2026-03-07 17:17:08,919 | INFO     | could have reported an average CPU frequency of 2470 MHz (8 samples)
[2026-03-07 12:17:42] 2026-03-07 17:17:08,919 | INFO     | ..............................
[2026-03-07 12:17:42] 2026-03-07 17:17:08,920 | INFO     | . Timing measurements:
[2026-03-07 12:17:42] 2026-03-07 17:17:08,920 | INFO     | . get job = 0 s
[2026-03-07 12:17:42] 2026-03-07 17:17:08,920 | INFO     | . initial setup = 8 s
[2026-03-07 12:17:42] 2026-03-07 17:17:08,920 | INFO     | . payload setup = 6 s
[2026-03-07 12:17:42] 2026-03-07 17:17:08,920 | INFO     | . stage-in = 0 s
[2026-03-07 12:17:42] 2026-03-07 17:17:08,920 | INFO     | . payload execution = 8616 s
[2026-03-07 12:17:42] 2026-03-07 17:17:08,920 | INFO     | . stage-out = 0 s
[2026-03-07 12:17:42] 2026-03-07 17:17:08,920 | INFO     | . log creation = 0 s
[2026-03-07 12:17:42] 2026-03-07 17:17:08,920 | INFO     | ..............................
[2026-03-07 12:17:42] 2026-03-07 17:17:09,429 | INFO     | 
[2026-03-07 12:17:42] 2026-03-07 17:17:09,430 | INFO     | job summary report
[2026-03-07 12:17:42] 2026-03-07 17:17:09,430 | INFO     | --------------------------------------------------
[2026-03-07 12:17:42] 2026-03-07 17:17:09,430 | INFO     | PanDA job id: 7039076202
[2026-03-07 12:17:42] 2026-03-07 17:17:09,430 | INFO     | task id: 48955015
[2026-03-07 12:17:42] 2026-03-07 17:17:09,430 | INFO     | errors: (none)
[2026-03-07 12:17:42] 2026-03-07 17:17:09,430 | INFO     | status: LOG_TRANSFER = DONE 
[2026-03-07 12:17:42] 2026-03-07 17:17:09,430 | INFO     | pilot state: finished 
[2026-03-07 12:17:42] 2026-03-07 17:17:09,430 | INFO     | transexitcode: 0
[2026-03-07 12:17:42] 2026-03-07 17:17:09,430 | INFO     | exeerrorcode: 0
[2026-03-07 12:17:42] 2026-03-07 17:17:09,431 | INFO     | exeerrordiag: 
[2026-03-07 12:17:42] 2026-03-07 17:17:09,431 | INFO     | exitcode: 0
[2026-03-07 12:17:42] 2026-03-07 17:17:09,431 | INFO     | exitmsg: OK
[2026-03-07 12:17:42] 2026-03-07 17:17:09,431 | INFO     | cpuconsumptiontime: 33457 s
[2026-03-07 12:17:42] 2026-03-07 17:17:09,431 | INFO     | nevents: 400
[2026-03-07 12:17:42] 2026-03-07 17:17:09,431 | INFO     | neventsw: 0
[2026-03-07 12:17:42] 2026-03-07 17:17:09,431 | INFO     | pid: 2629116
[2026-03-07 12:17:42] 2026-03-07 17:17:09,431 | INFO     | pgrp: 2629116
[2026-03-07 12:17:42] 2026-03-07 17:17:09,431 | INFO     | corecount: 4
[2026-03-07 12:17:42] 2026-03-07 17:17:09,431 | INFO     | event service: False
[2026-03-07 12:17:42] 2026-03-07 17:17:09,431 | INFO     | sizes: {0: 2295562, 1: 2295824, 11: 2295852, 8627: 2323662, 8628: 2332746, 8629: 2332884}
[2026-03-07 12:17:42] 2026-03-07 17:17:09,432 | INFO     | --------------------------------------------------
[2026-03-07 12:17:42] 2026-03-07 17:17:09,432 | INFO     | 
[2026-03-07 12:17:42] 2026-03-07 17:17:09,432 | INFO     | executing command: ls -lF /home/whitlerd/Desktop/BOINC/slots/72
[2026-03-07 12:17:42] 2026-03-07 17:17:09,467 | INFO     | queue jobs had 0 job(s) [purged]
[2026-03-07 12:17:42] 2026-03-07 17:17:09,467 | INFO     | queue payloads had 0 job(s) [purged]
[2026-03-07 12:17:42] 2026-03-07 17:17:09,467 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-07 12:17:42] 2026-03-07 17:17:09,468 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-07 12:17:42] 2026-03-07 17:17:09,468 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-07 12:17:42] 2026-03-07 17:17:09,468 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-07 12:17:42] 2026-03-07 17:17:09,468 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-07 12:17:42] 2026-03-07 17:17:09,468 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-07 12:17:42] 2026-03-07 17:17:09,468 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-07 12:17:42] 2026-03-07 17:17:09,468 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-07 12:17:42] 2026-03-07 17:17:09,468 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-07 12:17:42] 2026-03-07 17:17:09,468 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-07 12:17:42] 2026-03-07 17:17:09,468 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-07 12:17:42] 2026-03-07 17:17:09,468 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-07 12:17:42] 2026-03-07 17:17:09,469 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-07 12:17:42] 2026-03-07 17:17:09,469 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-07 12:17:42] 2026-03-07 17:17:09,469 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-07 12:17:42] 2026-03-07 17:17:09,469 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-07 12:17:42] 2026-03-07 17:17:09,469 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-07 12:17:42] 2026-03-07 17:17:09,469 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-07 12:17:42] 2026-03-07 17:17:09,469 | INFO     | job 7039076202 has completed (purged errors)
[2026-03-07 12:17:42] 2026-03-07 17:17:09,469 | INFO     | overall cleanup function is called
[2026-03-07 12:17:42] 2026-03-07 17:17:09,554 | INFO     | PID=2624132 has CPU usage=15.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2026-03-07 12:17:42] 2026-03-07 17:17:09,554 | INFO     | .. there are 4 such processes running
[2026-03-07 12:17:42] 2026-03-07 17:17:10,479 | INFO     | --- collectZombieJob: --- 10, [2629116]
[2026-03-07 12:17:42] 2026-03-07 17:17:10,479 | INFO     | zombie collector waiting for pid 2629116
[2026-03-07 12:17:42] 2026-03-07 17:17:10,479 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-07 12:17:42] 2026-03-07 17:17:10,479 | INFO     | collected zombie processes
[2026-03-07 12:17:42] 2026-03-07 17:17:10,479 | INFO     | will attempt to kill all subprocesses of pid=2629116
[2026-03-07 12:17:42] 2026-03-07 17:17:10,884 | INFO     | process IDs to be killed: [2629116] (in reverse order)
[2026-03-07 12:17:42] 2026-03-07 17:17:11,032 | WARNING  | found no corresponding commands to process id(s)
[2026-03-07 12:17:42] 2026-03-07 17:17:11,032 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-07 12:17:42] 2026-03-07 17:17:11,046 | INFO     | did not find any defunct processes belonging to 2629116
[2026-03-07 12:17:42] 2026-03-07 17:17:11,059 | INFO     | did not find any defunct processes belonging to 2629116
[2026-03-07 12:17:42] 2026-03-07 17:17:11,059 | INFO     | ready for new job
[2026-03-07 12:17:42] 2026-03-07 17:17:11,060 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-07 12:17:42] 2026-03-07 17:17:11,061 | INFO     | **************************************
[2026-03-07 12:17:42] 2026-03-07 17:17:11,062 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-03-07 12:17:42] 2026-03-07 17:17:11,062 | INFO     | **************************************
[2026-03-07 12:17:42] 2026-03-07 17:17:11,062 | INFO     | 
[2026-03-07 12:17:42] 2026-03-07 17:17:11,070 | INFO     | architecture information:
[2026-03-07 12:17:42] 2026-03-07 17:17:11,070 | INFO     | executing command: cat /etc/os-release
[2026-03-07 12:17:42] 2026-03-07 17:17:11,093 | INFO     | cat /etc/os-release:
[2026-03-07 12:17:42] NAME="CentOS Linux"
[2026-03-07 12:17:42] VERSION="7 (Core)"
[2026-03-07 12:17:42] ID="centos"
[2026-03-07 12:17:42] ID_LIKE="rhel fedora"
[2026-03-07 12:17:42] VERSION_ID="7"
[2026-03-07 12:17:42] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-07 12:17:42] ANSI_COLOR="0;31"
[2026-03-07 12:17:42] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-07 12:17:42] HOME_URL="https://www.centos.org/"
[2026-03-07 12:17:42] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-07 12:17:42] 
[2026-03-07 12:17:42] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-07 12:17:42] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-07 12:17:42] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-07 12:17:42] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-07 12:17:42] 
[2026-03-07 12:17:42] 2026-03-07 17:17:11,093 | INFO     | **************************************
[2026-03-07 12:17:42] 2026-03-07 17:17:11,596 | INFO     | executing command: df -mP /home/whitlerd/Desktop/BOINC/slots/72
[2026-03-07 12:17:42] 2026-03-07 17:17:11,617 | INFO     | sufficient remaining disk space (378183614464 B)
[2026-03-07 12:17:42] 2026-03-07 17:17:11,618 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-07 12:17:42] 2026-03-07 17:17:11,618 | INFO     | current server update state: UPDATING_FINAL
[2026-03-07 12:17:42] 2026-03-07 17:17:11,618 | INFO     | update_server=False
[2026-03-07 12:17:42] 2026-03-07 17:17:11,618 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-07 12:17:42] 2026-03-07 17:17:11,618 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-07 12:17:42] 2026-03-07 17:17:11,633 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-03-07 12:17:42] 2026-03-07 17:17:11,633 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-03-07 12:17:42] 2026-03-07 17:17:11,633 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-07 12:17:42] 2026-03-07 17:17:11,633 | INFO     | will abort loop
[2026-03-07 12:17:42] 2026-03-07 17:17:11,949 | INFO     | all data control threads have been joined
[2026-03-07 12:17:42] 2026-03-07 17:17:11,964 | INFO     | all job control threads have been joined
[2026-03-07 12:17:42] 2026-03-07 17:17:12,619 | INFO     | [job] retrieve thread has finished
[2026-03-07 12:17:42] 2026-03-07 17:17:12,624 | INFO     | [payload] validate_pre thread has finished
[2026-03-07 12:17:42] 2026-03-07 17:17:12,635 | INFO     | [job] job monitor thread has finished
[2026-03-07 12:17:42] 2026-03-07 17:17:12,926 | INFO     | [payload] failed_post thread has finished
[2026-03-07 12:17:42] 2026-03-07 17:17:12,937 | INFO     | [data] copytool_in thread has finished
[2026-03-07 12:17:42] 2026-03-07 17:17:12,955 | INFO     | all payload control threads have been joined
[2026-03-07 12:17:42] 2026-03-07 17:17:12,957 | INFO     | [data] control thread has finished
[2026-03-07 12:17:42] 2026-03-07 17:17:12,966 | INFO     | [payload] validate_post thread has finished
[2026-03-07 12:17:42] 2026-03-07 17:17:12,969 | INFO     | [job] control thread has finished
[2026-03-07 12:17:42] 2026-03-07 17:17:13,023 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-07 12:17:42] 2026-03-07 17:17:13,449 | INFO     | [job] validate thread has finished
[2026-03-07 12:17:42] 2026-03-07 17:17:13,625 | INFO     | [data] copytool_out thread has finished
[2026-03-07 12:17:42] 2026-03-07 17:17:13,802 | INFO     | [job] create_data_payload thread has finished
[2026-03-07 12:17:42] 2026-03-07 17:17:13,960 | INFO     | [payload] control thread has finished
[2026-03-07 12:17:42] 2026-03-07 17:17:14,025 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-07 12:17:42] 2026-03-07 17:17:14,071 | INFO     | [payload] execute_payloads thread has finished
[2026-03-07 12:17:42] 2026-03-07 17:17:14,872 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-07 12:17:42] 2026-03-07 17:17:15,030 | INFO     | [job] queue monitor thread has finished
[2026-03-07 12:17:42] 2026-03-07 17:17:18,878 | INFO     | [data] queue_monitor thread has finished
[2026-03-07 12:17:42] 2026-03-07 17:17:22,081 | INFO     | [monitor] cgroup control has ended
[2026-03-07 12:17:42] 2026-03-07 17:17:23,087 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 133673853462336)>', '<ExcThread(monitor, started 133673508648704)>']
[2026-03-07 12:17:42] 2026-03-07 17:17:28,112 | INFO     | all workflow threads have been joined
[2026-03-07 12:17:42] 2026-03-07 17:17:28,112 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-07 12:17:42] 2026-03-07 17:17:28,112 | INFO     | traces error code: 0
[2026-03-07 12:17:42] 2026-03-07 17:17:28,112 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-07 12:17:42] 2026-03-07 17:17:42,149 | INFO     | PID=2624132 has CPU usage=3.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-03-07 12:17:42] 2026-03-07 17:17:42,149 | INFO     | .. there are 4 such processes running
[2026-03-07 12:17:42] 2026-03-07 17:17:42,150 | INFO     | found 0 job(s) in 20 queues
[2026-03-07 12:17:42] 2026-03-07 17:17:42,150 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-07 12:17:42] 2026-03-07 17:17:42,150 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-07 12:17:42] 2026-03-07 17:17:42,150 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-07 12:17:42] 2026-03-07 17:17:42,150 | INFO     | [monitor] control thread has ended
[2026-03-07 12:17:42] 2026-03-07 17:17:42,282 [wrapper] ==== pilot stdout END ====
[2026-03-07 12:17:42] 2026-03-07 17:17:42,286 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-07 12:17:42] 2026-03-07 17:17:42,289 [wrapper] pilotpid: 2624132
[2026-03-07 12:17:42] 2026-03-07 17:17:42,293 [wrapper] Pilot exit status: 0
[2026-03-07 12:17:42] 2026-03-07 17:17:42,315 [wrapper] pandaids: 7039076202
[2026-03-07 12:17:42] 2026-03-07 17:17:42,425 [wrapper] cleanup supervisor_pilot 2685074 2624133
[2026-03-07 12:17:42] 2026-03-07 17:17:42,428 [wrapper] Test setup, not cleaning
[2026-03-07 12:17:42] 2026-03-07 17:17:42,431 [wrapper] apfmon messages muted
[2026-03-07 12:17:42] 2026-03-07 17:17:42,434 [wrapper] ==== wrapper stdout END ====
[2026-03-07 12:17:42] 2026-03-07 17:17:42,440 [wrapper] ==== wrapper stderr END ====
[2026-03-07 12:17:42]  *** Error codes and diagnostics ***
[2026-03-07 12:17:42]     "exeErrorCode": 0,
[2026-03-07 12:17:42]     "exeErrorDiag": "",
[2026-03-07 12:17:42]     "pilotErrorCode": 0,
[2026-03-07 12:17:42]     "pilotErrorDiag": "",
[2026-03-07 12:17:42]  *** Listing of results directory ***
[2026-03-07 12:17:42] total 615496
[2026-03-07 12:17:42] -rwx------ 1 whitlerd whitlerd     36322 Mar  7 05:23 runpilot2-wrapper.sh
[2026-03-07 12:17:42] -rw-r--r-- 1 whitlerd whitlerd      5111 Mar  7 05:23 queuedata.json
[2026-03-07 12:17:42] -rw-r--r-- 1 whitlerd whitlerd    584627 Mar  7 05:23 pilot3.tar.gz
[2026-03-07 12:17:42] -rw-rw-r-- 1 whitlerd whitlerd       100 Mar  7 09:52 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-07 12:17:42] -rwxr-xr-x 1 whitlerd whitlerd      7986 Mar  7 09:52 run_atlas
[2026-03-07 12:17:42] -rw-rw-r-- 1 whitlerd whitlerd       105 Mar  7 09:52 job.xml
[2026-03-07 12:17:42] -rw-r--r-- 2 whitlerd whitlerd 439082548 Mar  7 09:52 EVNT.46701403._002187.pool.root.1
[2026-03-07 12:17:42] -rw-r--r-- 2 whitlerd whitlerd     15845 Mar  7 09:52 start_atlas.sh
[2026-03-07 12:17:42] drwxrwx--x 2 whitlerd whitlerd      4096 Mar  7 09:52 shared
[2026-03-07 12:17:42] -rw-r--r-- 2 whitlerd whitlerd    597964 Mar  7 09:52 input.tar.gz
[2026-03-07 12:17:42] -rw-rw-r-- 1 whitlerd whitlerd         0 Mar  7 09:52 boinc_setup_complete
[2026-03-07 12:17:42] -rw-rw-r-- 1 whitlerd whitlerd      9566 Mar  7 09:52 init_data.xml
[2026-03-07 12:17:42] -rw-rw-r-- 1 whitlerd whitlerd         0 Mar  7 09:52 boinc_lockfile
[2026-03-07 12:17:42] -rw-rw-r-- 1 whitlerd whitlerd      2570 Mar  7 09:52 pandaJob.out
[2026-03-07 12:17:42] -rw------- 1 whitlerd whitlerd    999177 Mar  7 09:53 agis_schedconf.cvmfs.json
[2026-03-07 12:17:42] -rw------- 1 whitlerd whitlerd   1521291 Mar  7 09:53 agis_ddmendpoints.agis.ALL.json
[2026-03-07 12:17:42] -rw------- 1 whitlerd whitlerd       424 Mar  7 09:53 workernode_map.json
[2026-03-07 12:17:42] drwx------ 5 whitlerd whitlerd      4096 Mar  7 09:53 pilot3
[2026-03-07 12:17:42] -rw------- 1 whitlerd whitlerd 184109157 Mar  7 12:16 HITS.48955015._006931.pool.root.1
[2026-03-07 12:17:42] -rw-rw-r-- 1 whitlerd whitlerd       530 Mar  7 12:16 boinc_task_state.xml
[2026-03-07 12:17:42] -rw------- 1 whitlerd whitlerd      1021 Mar  7 12:17 memory_monitor_summary.json
[2026-03-07 12:17:42] -rw------- 1 whitlerd whitlerd    346223 Mar  7 12:17 log.48955015._006931.job.log.tgz.1
[2026-03-07 12:17:42] -rw------- 1 whitlerd whitlerd      6282 Mar  7 12:17 heartbeat.json
[2026-03-07 12:17:42] -rw------- 1 whitlerd whitlerd        95 Mar  7 12:17 pilot_heartbeat.json
[2026-03-07 12:17:42] -rw-rw-r-- 1 whitlerd whitlerd      8192 Mar  7 12:17 boinc_mmap_file
[2026-03-07 12:17:42] -rw-rw-r-- 1 whitlerd whitlerd        27 Mar  7 12:17 wrapper_checkpoint.txt
[2026-03-07 12:17:42] -rw------- 1 whitlerd whitlerd       822 Mar  7 12:17 pilotlog.txt
[2026-03-07 12:17:42] -rw------- 1 whitlerd whitlerd   1222350 Mar  7 12:17 log.48955015._006931.job.log.1
[2026-03-07 12:17:42] -rw------- 1 whitlerd whitlerd       357 Mar  7 12:17 output.list
[2026-03-07 12:17:42] -rw-rw-r-- 1 whitlerd whitlerd       620 Mar  7 12:17 runtime_log
[2026-03-07 12:17:42] -rw------- 1 whitlerd whitlerd   1587200 Mar  7 12:17 result.tar.gz
[2026-03-07 12:17:42] -rw-rw-r-- 1 whitlerd whitlerd      9040 Mar  7 12:17 runtime_log.err
[2026-03-07 12:17:42] -rw------- 1 whitlerd whitlerd       648 Mar  7 12:17 CuLMDmI03I9n9Rq4apOajLDm4fhM0noT9bVooX4SDmCJTLDm2hQhPm.diag
[2026-03-07 12:17:42] -rw-rw-r-- 1 whitlerd whitlerd     21241 Mar  7 12:17 stderr.txt
[2026-03-07 12:17:42] HITS file was successfully produced:
[2026-03-07 12:17:42] -rw------- 1 whitlerd whitlerd 184109157 Mar  7 12:16 shared/HITS.pool.root.1
[2026-03-07 12:17:42]  *** Contents of shared directory: ***
[2026-03-07 12:17:42] total 610748
[2026-03-07 12:17:42] -rw-r--r-- 2 whitlerd whitlerd 439082548 Mar  7 09:52 ATLAS.root_0
[2026-03-07 12:17:42] -rw-r--r-- 2 whitlerd whitlerd     15845 Mar  7 09:52 start_atlas.sh
[2026-03-07 12:17:42] -rw-r--r-- 2 whitlerd whitlerd    597964 Mar  7 09:52 input.tar.gz
[2026-03-07 12:17:42] -rw------- 1 whitlerd whitlerd 184109157 Mar  7 12:16 HITS.pool.root.1
[2026-03-07 12:17:42] -rw------- 1 whitlerd whitlerd   1587200 Mar  7 12:17 result.tar.gz
12:17:44 (2619579): run_atlas exited; CPU time 33889.370002
12:17:44 (2619579): called boinc_finish(0)

</stderr_txt>
]]>

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