Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
04:52:32 (813006): wrapper (7.7.26015): starting
04:52:32 (813006): wrapper: running run_atlas (--nthreads 4)
[2026-03-09 04:52:32] Arguments: --nthreads 4
[2026-03-09 04:52:32] Threads: 4
[2026-03-09 04:52:32] Checking for CVMFS
[2026-03-09 04:52:32] No cvmfs_config command found, will try listing directly
[2026-03-09 04:52:32] CVMFS is ok
[2026-03-09 04:52:32] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-09 04:52:32] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-09 04:52:32] Further information can be found at the LHC@home message board.
[2026-03-09 04:52:32] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-09 04:52:32] Checking for apptainer binary...
[2026-03-09 04:52:32] which: no apptainer in ((null))
[2026-03-09 04:52:32] apptainer is not installed, using version from CVMFS
[2026-03-09 04:52:32] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-09 04:52:33] WARNING: Environment variable TMPDIR already has value [/var/lib/boinc/var/slot128/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut29.grid.cesnet.cz
[2026-03-09 04:52:33] apptainer works
[2026-03-09 04:52:33] Set ATHENA_PROC_NUMBER=4
[2026-03-09 04:52:33] Set ATHENA_CORE_NUMBER=4
[2026-03-09 04:52:33] Starting ATLAS job with PandaID=7039062983
[2026-03-09 04:52:33] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc/var/slot128/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-09 06:10:00]  *** The last 200 lines of the pilot log: ***
[2026-03-09 06:10:00]  lfn=log.48955006._015960.job.log.tgz.1
[2026-03-09 06:10:00]  mtime=0
[2026-03-09 06:10:00]  protocol_id=None
[2026-03-09 06:10:00]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2026-03-09 06:10:00]  replicas=None
[2026-03-09 06:10:00]  scope=mc23_13p6TeV
[2026-03-09 06:10:00]  status=None
[2026-03-09 06:10:00]  status_code=0
[2026-03-09 06:10:00]  storage_token=
[2026-03-09 06:10:00]  surl=/var/lib/boinc/var/slot128/slots/0/PanDA_Pilot-7039062983/log.48955006._015960.job.log.tgz.1
[2026-03-09 06:10:00]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/8c/3e/log.48955006._015960.job.log.tgz.1
[2026-03-09 06:10:00]  workdir=None
[2026-03-09 06:10:00] ]
[2026-03-09 06:10:00] 2026-03-09 05:09:21,045 | INFO     | transferring file log.48955006._015960.job.log.tgz.1 from /var/lib/boinc/var/slot128/slots/0/PanDA_Pilot-7039062983/log.48955006._015960.job.log.tgz.1 to /var/lib/
[2026-03-09 06:10:00] 2026-03-09 05:09:21,045 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc/var/slot128/slots/0/PanDA_Pilot-7039062983/log.48955006._015960.job.log.tgz.1 /var/lib/boinc/var/slot128/slots/0/
[2026-03-09 06:10:00] 2026-03-09 05:09:21,063 | INFO     | adding to output.list: log.48955006._015960.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/8c/3e/log.48955006._015960.job.log.tg
[2026-03-09 06:10:00] 2026-03-09 05:09:21,064 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-03-09 06:10:00] 2026-03-09 05:09:21,064 | INFO     | summary of transferred files:
[2026-03-09 06:10:00] 2026-03-09 05:09:21,064 | INFO     |  -- lfn=log.48955006._015960.job.log.tgz.1, status_code=0, status=transferred
[2026-03-09 06:10:00] 2026-03-09 05:09:21,069 | INFO     | stage-out finished correctly
[2026-03-09 06:10:00] 2026-03-09 05:09:21,471 | INFO     | PID=820302 has CPU usage=13.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-03-09 06:10:00] 2026-03-09 05:09:21,471 | INFO     | .. there are 50 such processes running
[2026-03-09 06:10:00] 2026-03-09 05:09:22,124 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-03-09 06:10:00] 2026-03-09 05:09:22,471 | INFO     | time since job start (4597s) is within the limit (349056.0s)
[2026-03-09 06:10:00] 2026-03-09 05:09:23,750 | INFO     | job 7039062983 has state=finished
[2026-03-09 06:10:00] 2026-03-09 05:09:23,751 | INFO     | preparing for final server update for job 7039062983 in state='finished'
[2026-03-09 06:10:00] 2026-03-09 05:09:23,751 | INFO     | reading metadata from: /var/lib/boinc/var/slot128/slots/0/PanDA_Pilot-7039062983/jobReport.json
[2026-03-09 06:10:00] 2026-03-09 05:09:23,752 | INFO     | added worker_node to metadata from /var/lib/boinc/var/slot128/slots/0/workernode_map.json
[2026-03-09 06:10:00] 2026-03-09 05:09:23,752 | INFO     | this job has now completed (state=finished)
[2026-03-09 06:10:00] 2026-03-09 05:09:23,752 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-03-09 06:10:00] 2026-03-09 05:09:23,752 | INFO     | log transfer has been attempted: DONE
[2026-03-09 06:10:00] 2026-03-09 05:09:23,752 | INFO     | job 7039062983 has finished - writing final server update
[2026-03-09 06:10:00] 2026-03-09 05:09:23,753 | WARNING  | failed to read HTCondor job classAd: [Errno 2] No such file or directory: '/scratch/condor/execute/dir_6935/.job.ad'
[2026-03-09 06:10:00] 2026-03-09 05:09:23,753 | INFO     | total number of processed events: 400 (read)
[2026-03-09 06:10:00] 2026-03-09 05:09:23,771 | INFO     | using path: /var/lib/boinc/var/slot128/slots/0/PanDA_Pilot-7039062983/memory_monitor_summary.json (trf name=prmon)
[2026-03-09 06:10:00] 2026-03-09 05:09:23,772 | INFO     | extracted standard info from prmon json
[2026-03-09 06:10:00] 2026-03-09 05:09:23,772 | INFO     | extracted standard memory fields from prmon json
[2026-03-09 06:10:00] 2026-03-09 05:09:23,772 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-03-09 06:10:00] 2026-03-09 05:09:23,772 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-03-09 06:10:00] 2026-03-09 05:09:23,772 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-03-09 06:10:00] 2026-03-09 05:09:23,773 | INFO     | fitting pss+swap vs Time
[2026-03-09 06:10:00] 2026-03-09 05:09:23,773 | INFO     | sum of square deviations: 97479037.0
[2026-03-09 06:10:00] 2026-03-09 05:09:23,774 | INFO     | sum of deviations: 348913412.0000001
[2026-03-09 06:10:00] 2026-03-09 05:09:23,774 | INFO     | mean x: 1773030735.5
[2026-03-09 06:10:00] 2026-03-09 05:09:23,774 | INFO     | mean y: 2325308.588235294
[2026-03-09 06:10:00] 2026-03-09 05:09:23,774 | INFO     | intersect: -6344005374.840395
[2026-03-09 06:10:00] 2026-03-09 05:09:23,774 | INFO     | chi2: 0.0002353953163774505
[2026-03-09 06:10:00] 2026-03-09 05:09:23,774 | INFO     | current memory leak: 3.58 B/s (using 68 data points, chi2=0.00)
[2026-03-09 06:10:00] 2026-03-09 05:09:23,774 | INFO     | could have reported an average CPU frequency of 3588 MHz (6 samples)
[2026-03-09 06:10:00] 2026-03-09 05:09:23,774 | INFO     | ..............................
[2026-03-09 06:10:00] 2026-03-09 05:09:23,774 | INFO     | . Timing measurements:
[2026-03-09 06:10:00] 2026-03-09 05:09:23,774 | INFO     | . get job = 0 s
[2026-03-09 06:10:00] 2026-03-09 05:09:23,774 | INFO     | . initial setup = 5 s
[2026-03-09 06:10:00] 2026-03-09 05:09:23,774 | INFO     | . payload setup = 5 s
[2026-03-09 06:10:00] 2026-03-09 05:09:23,774 | INFO     | . stage-in = 0 s
[2026-03-09 06:10:00] 2026-03-09 05:09:23,774 | INFO     | . payload execution = 4574 s
[2026-03-09 06:10:00] 2026-03-09 05:09:23,774 | INFO     | . stage-out = 0 s
[2026-03-09 06:10:00] 2026-03-09 05:09:23,774 | INFO     | . log creation = 0 s
[2026-03-09 06:10:00] 2026-03-09 05:09:23,774 | INFO     | ..............................
[2026-03-09 06:10:00] 2026-03-09 05:09:24,032 | INFO     | 
[2026-03-09 06:10:00] 2026-03-09 05:09:24,032 | INFO     | job summary report
[2026-03-09 06:10:00] 2026-03-09 05:09:24,032 | INFO     | --------------------------------------------------
[2026-03-09 06:10:00] 2026-03-09 05:09:24,032 | INFO     | PanDA job id: 7039062983
[2026-03-09 06:10:00] 2026-03-09 05:09:24,032 | INFO     | task id: 48955006
[2026-03-09 06:10:00] 2026-03-09 05:09:24,032 | INFO     | errors: (none)
[2026-03-09 06:10:00] 2026-03-09 05:09:24,032 | INFO     | status: LOG_TRANSFER = DONE 
[2026-03-09 06:10:00] 2026-03-09 05:09:24,032 | INFO     | pilot state: finished 
[2026-03-09 06:10:00] 2026-03-09 05:09:24,032 | INFO     | transexitcode: 0
[2026-03-09 06:10:00] 2026-03-09 05:09:24,033 | INFO     | exeerrorcode: 0
[2026-03-09 06:10:00] 2026-03-09 05:09:24,033 | INFO     | exeerrordiag: 
[2026-03-09 06:10:00] 2026-03-09 05:09:24,033 | INFO     | exitcode: 0
[2026-03-09 06:10:00] 2026-03-09 05:09:24,033 | INFO     | exitmsg: OK
[2026-03-09 06:10:00] 2026-03-09 05:09:24,033 | INFO     | cpuconsumptiontime: 17291 s
[2026-03-09 06:10:00] 2026-03-09 05:09:24,033 | INFO     | nevents: 400
[2026-03-09 06:10:00] 2026-03-09 05:09:24,033 | INFO     | neventsw: 0
[2026-03-09 06:10:00] 2026-03-09 05:09:24,033 | INFO     | pid: 832754
[2026-03-09 06:10:00] 2026-03-09 05:09:24,033 | INFO     | pgrp: 832754
[2026-03-09 06:10:00] 2026-03-09 05:09:24,033 | INFO     | corecount: 4
[2026-03-09 06:10:00] 2026-03-09 05:09:24,033 | INFO     | event service: False
[2026-03-09 06:10:00] 2026-03-09 05:09:24,033 | INFO     | sizes: {0: 2280240, 11: 2280240, 4583: 2306524, 4584: 2315546, 4585: 2315602, 4587: 2315796}
[2026-03-09 06:10:00] 2026-03-09 05:09:24,033 | INFO     | --------------------------------------------------
[2026-03-09 06:10:00] 2026-03-09 05:09:24,033 | INFO     | 
[2026-03-09 06:10:00] 2026-03-09 05:09:24,033 | INFO     | executing command: ls -lF /var/lib/boinc/var/slot128/slots/0
[2026-03-09 06:10:00] 2026-03-09 05:09:24,053 | INFO     | queue jobs had 0 job(s) [purged]
[2026-03-09 06:10:00] 2026-03-09 05:09:24,053 | INFO     | queue payloads had 0 job(s) [purged]
[2026-03-09 06:10:00] 2026-03-09 05:09:24,053 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-09 06:10:00] 2026-03-09 05:09:24,053 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-09 06:10:00] 2026-03-09 05:09:24,053 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-09 06:10:00] 2026-03-09 05:09:24,053 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-09 06:10:00] 2026-03-09 05:09:24,053 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-09 06:10:00] 2026-03-09 05:09:24,054 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-09 06:10:00] 2026-03-09 05:09:24,054 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-09 06:10:00] 2026-03-09 05:09:24,054 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-09 06:10:00] 2026-03-09 05:09:24,054 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-09 06:10:00] 2026-03-09 05:09:24,054 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-09 06:10:00] 2026-03-09 05:09:24,054 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-09 06:10:00] 2026-03-09 05:09:24,054 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-09 06:10:00] 2026-03-09 05:09:24,054 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-09 06:10:00] 2026-03-09 05:09:24,054 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-09 06:10:00] 2026-03-09 05:09:24,054 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-09 06:10:00] 2026-03-09 05:09:24,054 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-09 06:10:00] 2026-03-09 05:09:24,054 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-09 06:10:00] 2026-03-09 05:09:24,054 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-09 06:10:00] 2026-03-09 05:09:24,054 | INFO     | job 7039062983 has completed (purged errors)
[2026-03-09 06:10:00] 2026-03-09 05:09:24,054 | INFO     | overall cleanup function is called
[2026-03-09 06:10:00] 2026-03-09 05:09:25,061 | INFO     | --- collectZombieJob: --- 10, [832754]
[2026-03-09 06:10:00] 2026-03-09 05:09:25,061 | INFO     | zombie collector waiting for pid 832754
[2026-03-09 06:10:00] 2026-03-09 05:09:25,061 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-09 06:10:00] 2026-03-09 05:09:25,061 | INFO     | collected zombie processes
[2026-03-09 06:10:00] 2026-03-09 05:09:25,061 | INFO     | will attempt to kill all subprocesses of pid=832754
[2026-03-09 06:10:00] 2026-03-09 05:09:25,918 | INFO     | process IDs to be killed: [832754] (in reverse order)
[2026-03-09 06:10:00] 2026-03-09 05:09:26,117 | WARNING  | process 832754 can no longer be monitored (due to stat problems) - aborting
[2026-03-09 06:10:00] 2026-03-09 05:09:26,210 | WARNING  | found no corresponding commands to process id(s)
[2026-03-09 06:10:00] 2026-03-09 05:09:26,214 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-09 06:10:00] 2026-03-09 05:09:26,286 | INFO     | did not find any defunct processes belonging to 832754
[2026-03-09 06:10:00] 2026-03-09 05:09:26,394 | INFO     | did not find any defunct processes belonging to 832754
[2026-03-09 06:10:00] 2026-03-09 05:09:26,395 | INFO     | ready for new job
[2026-03-09 06:10:00] 2026-03-09 05:09:26,395 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-09 06:10:00] 2026-03-09 05:09:26,396 | INFO     | **************************************
[2026-03-09 06:10:00] 2026-03-09 05:09:26,396 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-03-09 06:10:00] 2026-03-09 05:09:26,396 | INFO     | **************************************
[2026-03-09 06:10:00] 2026-03-09 05:09:26,396 | INFO     | 
[2026-03-09 06:10:00] 2026-03-09 05:09:26,405 | INFO     | architecture information:
[2026-03-09 06:10:00] 2026-03-09 05:09:26,405 | INFO     | executing command: cat /etc/os-release
[2026-03-09 06:10:00] 2026-03-09 05:09:26,424 | INFO     | cat /etc/os-release:
[2026-03-09 06:10:00] NAME="CentOS Linux"
[2026-03-09 06:10:00] VERSION="7 (Core)"
[2026-03-09 06:10:00] ID="centos"
[2026-03-09 06:10:00] ID_LIKE="rhel fedora"
[2026-03-09 06:10:00] VERSION_ID="7"
[2026-03-09 06:10:00] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-09 06:10:00] ANSI_COLOR="0;31"
[2026-03-09 06:10:00] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-09 06:10:00] HOME_URL="https://www.centos.org/"
[2026-03-09 06:10:00] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-09 06:10:00] 
[2026-03-09 06:10:00] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-09 06:10:00] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-09 06:10:00] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-09 06:10:00] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-09 06:10:00] 
[2026-03-09 06:10:00] 2026-03-09 05:09:26,424 | INFO     | **************************************
[2026-03-09 06:10:00] 2026-03-09 05:09:26,524 | INFO     | using path: /var/lib/boinc/var/slot128/slots/0/memory_monitor_summary.json (trf name=prmon)
[2026-03-09 06:10:00] 2026-03-09 05:09:26,927 | INFO     | executing command: df -mP /var/lib/boinc/var/slot128/slots/0
[2026-03-09 06:10:00] 2026-03-09 05:09:26,948 | INFO     | sufficient remaining disk space (20018364416 B)
[2026-03-09 06:10:00] 2026-03-09 05:09:26,950 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-09 06:10:00] 2026-03-09 05:09:26,950 | INFO     | current server update state: UPDATING_FINAL
[2026-03-09 06:10:00] 2026-03-09 05:09:26,950 | INFO     | update_server=False
[2026-03-09 06:10:00] 2026-03-09 05:09:26,950 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-09 06:10:00] 2026-03-09 05:09:26,950 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-09 06:10:00] 2026-03-09 05:09:27,071 | INFO     | number of running child processes to parent process 832754: 1
[2026-03-09 06:10:00] 2026-03-09 05:09:27,071 | INFO     | maximum number of monitored processes: 6
[2026-03-09 06:10:00] 2026-03-09 05:09:27,071 | INFO     | aborting job monitoring since job object (job id=7039062983) has expired
[2026-03-09 06:10:00] 2026-03-09 05:09:27,072 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-09 06:10:00] 2026-03-09 05:09:27,072 | INFO     | will abort loop
[2026-03-09 06:10:00] 2026-03-09 05:09:27,155 | INFO     | all data control threads have been joined
[2026-03-09 06:10:00] 2026-03-09 05:09:27,234 | INFO     | all payload control threads have been joined
[2026-03-09 06:10:00] 2026-03-09 05:09:27,954 | INFO     | [job] retrieve thread has finished
[2026-03-09 06:10:00] 2026-03-09 05:09:28,001 | INFO     | all job control threads have been joined
[2026-03-09 06:10:00] 2026-03-09 05:09:28,076 | INFO     | [job] job monitor thread has finished
[2026-03-09 06:10:00] 2026-03-09 05:09:28,081 | INFO     | [payload] failed_post thread has finished
[2026-03-09 06:10:00] 2026-03-09 05:09:28,123 | INFO     | [job] validate thread has finished
[2026-03-09 06:10:00] 2026-03-09 05:09:28,160 | INFO     | [data] control thread has finished
[2026-03-09 06:10:00] 2026-03-09 05:09:28,180 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-09 06:10:00] 2026-03-09 05:09:28,239 | INFO     | [payload] control thread has finished
[2026-03-09 06:10:00] 2026-03-09 05:09:28,547 | INFO     | [data] copytool_in thread has finished
[2026-03-09 06:10:00] 2026-03-09 05:09:28,556 | INFO     | [payload] validate_pre thread has finished
[2026-03-09 06:10:00] 2026-03-09 05:09:28,647 | INFO     | [job] create_data_payload thread has finished
[2026-03-09 06:10:00] 2026-03-09 05:09:28,794 | INFO     | [payload] execute_payloads thread has finished
[2026-03-09 06:10:00] 2026-03-09 05:09:28,830 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-09 06:10:00] 2026-03-09 05:09:28,955 | INFO     | [data] copytool_out thread has finished
[2026-03-09 06:10:00] 2026-03-09 05:09:29,006 | INFO     | [job] control thread has finished
[2026-03-09 06:10:00] 2026-03-09 05:09:29,340 | INFO     | [payload] validate_post thread has finished
[2026-03-09 06:10:00] 2026-03-09 05:09:29,835 | INFO     | [job] queue monitor thread has finished
[2026-03-09 06:10:00] 2026-03-09 05:09:32,185 | INFO     | [data] queue_monitor thread has finished
[2026-03-09 06:10:00] 2026-03-09 05:09:37,687 | INFO     | job.realtimelogging is not enabled
[2026-03-09 06:10:00] 2026-03-09 05:09:38,693 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-09 06:10:00] 2026-03-09 05:09:53,132 | INFO     | [monitor] cgroup control has ended
[2026-03-09 06:10:00] 2026-03-09 05:09:54,613 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 22737999234880)>', '<ExcThread(monitor, started 22737688979200)>']
[2026-03-09 06:10:00] 2026-03-09 05:09:56,130 | INFO     | PID=820302 has CPU usage=8.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-03-09 06:10:00] 2026-03-09 05:09:56,130 | INFO     | .. there are 50 such processes running
[2026-03-09 06:10:00] 2026-03-09 05:09:56,131 | INFO     | found 0 job(s) in 20 queues
[2026-03-09 06:10:00] 2026-03-09 05:09:56,131 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-09 06:10:00] 2026-03-09 05:09:56,131 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-09 06:10:00] 2026-03-09 05:09:56,131 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-09 06:10:00] 2026-03-09 05:09:56,131 | INFO     | [monitor] control thread has ended
[2026-03-09 06:10:00] 2026-03-09 05:09:59,638 | INFO     | all workflow threads have been joined
[2026-03-09 06:10:00] 2026-03-09 05:09:59,638 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-09 06:10:00] 2026-03-09 05:09:59,638 | INFO     | traces error code: 0
[2026-03-09 06:10:00] 2026-03-09 05:09:59,639 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-09 06:10:00] 2026-03-09 05:09:59,831 [wrapper] ==== pilot stdout END ====
[2026-03-09 06:10:00] 2026-03-09 05:09:59,837 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-09 06:10:00] 2026-03-09 05:09:59,840 [wrapper] pilotpid: 820302
[2026-03-09 06:10:00] 2026-03-09 05:09:59,843 [wrapper] Pilot exit status: 0
[2026-03-09 06:10:00] 2026-03-09 05:09:59,852 [wrapper] pandaids: 7039062983
[2026-03-09 06:10:00] 2026-03-09 05:09:59,982 [wrapper] cleanup supervisor_pilot 1446981 820303
[2026-03-09 06:10:00] 2026-03-09 05:09:59,988 [wrapper] Test setup, not cleaning
[2026-03-09 06:10:00] 2026-03-09 05:09:59,991 [wrapper] apfmon messages muted
[2026-03-09 06:10:00] 2026-03-09 05:09:59,993 [wrapper] ==== wrapper stdout END ====
[2026-03-09 06:10:00] 2026-03-09 05:09:59,995 [wrapper] ==== wrapper stderr END ====
[2026-03-09 06:10:00]  *** Error codes and diagnostics ***
[2026-03-09 06:10:00]     "exeErrorCode": 0,
[2026-03-09 06:10:00]     "exeErrorDiag": "",
[2026-03-09 06:10:00]     "pilotErrorCode": 0,
[2026-03-09 06:10:00]     "pilotErrorDiag": "",
[2026-03-09 06:10:00]  *** Listing of results directory ***
[2026-03-09 06:10:00] total 608428
[2026-03-09 06:10:00] -rw-r--r--. 1 boinc boinc    584627 Mar  7 10:08 pilot3.tar.gz
[2026-03-09 06:10:00] -rw-r--r--. 1 boinc boinc      5111 Mar  7 10:40 queuedata.json
[2026-03-09 06:10:00] -rwx------. 1 boinc boinc     36322 Mar  7 10:41 runpilot2-wrapper.sh
[2026-03-09 06:10:00] -rw-r--r--. 1 boinc boinc       100 Mar  9 04:52 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-09 06:10:00] -rwxr-xr-x. 1 boinc boinc      7986 Mar  9 04:52 run_atlas
[2026-03-09 06:10:00] -rw-r--r--. 1 boinc boinc       105 Mar  9 04:52 job.xml
[2026-03-09 06:10:00] -rw-r--r--. 1 boinc boinc      6706 Mar  9 04:52 init_data.xml
[2026-03-09 06:10:00] -rw-r--r--. 2 boinc boinc 439548151 Mar  9 04:52 EVNT.46701403._000320.pool.root.1
[2026-03-09 06:10:00] -rw-r--r--. 2 boinc boinc     15845 Mar  9 04:52 start_atlas.sh
[2026-03-09 06:10:00] drwxrwx--x. 2 boinc boinc      4096 Mar  9 04:52 shared
[2026-03-09 06:10:00] -rw-r--r--. 2 boinc boinc    597964 Mar  9 04:52 input.tar.gz
[2026-03-09 06:10:00] -rw-r--r--. 1 boinc boinc         0 Mar  9 04:52 boinc_lockfile
[2026-03-09 06:10:00] -rw-r--r--. 1 boinc boinc      2563 Mar  9 04:52 pandaJob.out
[2026-03-09 06:10:00] -rw-------. 1 boinc boinc    999108 Mar  9 04:52 agis_schedconf.cvmfs.json
[2026-03-09 06:10:00] -rw-------. 1 boinc boinc   1511578 Mar  9 04:52 agis_ddmendpoints.agis.ALL.json
[2026-03-09 06:10:00] -rw-------. 1 boinc boinc       444 Mar  9 04:52 workernode_map.json
[2026-03-09 06:10:00] drwx------. 5 boinc boinc      4096 Mar  9 04:52 pilot3
[2026-03-09 06:10:00] -rw-------. 1 boinc boinc 177682508 Mar  9 06:08 HITS.48955006._015960.pool.root.1
[2026-03-09 06:10:00] -rw-r--r--. 1 boinc boinc       530 Mar  9 06:09 boinc_task_state.xml
[2026-03-09 06:10:00] -rw-------. 1 boinc boinc      1026 Mar  9 06:09 memory_monitor_summary.json
[2026-03-09 06:10:00] -rw-------. 1 boinc boinc    259190 Mar  9 06:09 log.48955006._015960.job.log.tgz.1
[2026-03-09 06:10:00] -rw-------. 1 boinc boinc      6364 Mar  9 06:09 heartbeat.json
[2026-03-09 06:10:00] -rw-r--r--. 1 boinc boinc      8192 Mar  9 06:09 boinc_mmap_file
[2026-03-09 06:10:00] -rw-r--r--. 1 boinc boinc        27 Mar  9 06:09 wrapper_checkpoint.txt
[2026-03-09 06:10:00] -rw-------. 1 boinc boinc        95 Mar  9 06:09 pilot_heartbeat.json
[2026-03-09 06:10:00] -rw-------. 1 boinc boinc      5319 Mar  9 06:09 pilotlog.txt
[2026-03-09 06:10:00] -rw-------. 1 boinc boinc    674318 Mar  9 06:09 log.48955006._015960.job.log.1
[2026-03-09 06:10:00] -rw-------. 1 boinc boinc       357 Mar  9 06:10 output.list
[2026-03-09 06:10:00] -rw-r--r--. 1 boinc boinc       620 Mar  9 06:10 runtime_log
[2026-03-09 06:10:00] -rw-------. 1 boinc boinc    952320 Mar  9 06:10 result.tar.gz
[2026-03-09 06:10:00] -rw-r--r--. 1 boinc boinc      9221 Mar  9 06:10 runtime_log.err
[2026-03-09 06:10:00] -rw-------. 1 boinc boinc       660 Mar  9 06:10 fMxLDmIL3I9nsSi4ap6QjLDmwznN0nGgGQJmIVkRDm6PVLDm8e9DRn.diag
[2026-03-09 06:10:00] -rw-r--r--. 1 boinc boinc     21589 Mar  9 06:10 stderr.txt
[2026-03-09 06:10:00] HITS file was successfully produced:
[2026-03-09 06:10:00] -rw-------. 1 boinc boinc 177682508 Mar  9 06:08 shared/HITS.pool.root.1
[2026-03-09 06:10:00]  *** Contents of shared directory: ***
[2026-03-09 06:10:00] total 604308
[2026-03-09 06:10:00] -rw-r--r--. 2 boinc boinc 439548151 Mar  9 04:52 ATLAS.root_0
[2026-03-09 06:10:00] -rw-r--r--. 2 boinc boinc     15845 Mar  9 04:52 start_atlas.sh
[2026-03-09 06:10:00] -rw-r--r--. 2 boinc boinc    597964 Mar  9 04:52 input.tar.gz
[2026-03-09 06:10:00] -rw-------. 1 boinc boinc 177682508 Mar  9 06:08 HITS.pool.root.1
[2026-03-09 06:10:00] -rw-------. 1 boinc boinc    952320 Mar  9 06:10 result.tar.gz
06:10:01 (813006): run_atlas exited; CPU time 17499.162195
06:10:01 (813006): called boinc_finish(0)

</stderr_txt>
]]>

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