Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
07:32:05 (1786583): wrapper (7.7.26015): starting
07:32:05 (1786583): wrapper: running run_atlas (--nthreads 4)
[2026-03-09 07:32:05] Arguments: --nthreads 4
[2026-03-09 07:32:05] Threads: 4
[2026-03-09 07:32:05] Checking for CVMFS
[2026-03-09 07:32:05] No cvmfs_config command found, will try listing directly
[2026-03-09 07:32:05] CVMFS is ok
[2026-03-09 07:32:06] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-09 07:32:06] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-09 07:32:06] Further information can be found at the LHC@home message board.
[2026-03-09 07:32:06] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-09 07:32:06] Checking for apptainer binary...
[2026-03-09 07:32:06] which: no apptainer in ((null))
[2026-03-09 07:32:06] apptainer is not installed, using version from CVMFS
[2026-03-09 07:32:06] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-09 07:32:07] WARNING: Environment variable TMPDIR already has value [/var/lib/boinc/var/slot64/slots/10/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut10.grid.cesnet.cz
[2026-03-09 07:32:07] apptainer works
[2026-03-09 07:32:07] Set ATHENA_PROC_NUMBER=4
[2026-03-09 07:32:07] Set ATHENA_CORE_NUMBER=4
[2026-03-09 07:32:07] Starting ATLAS job with PandaID=7039032746
[2026-03-09 07:32:07] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc/var/slot64/slots/10 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-09 10:54:38]  *** The last 200 lines of the pilot log: ***
[2026-03-09 10:54:38] 2026-03-09 09:53:39,147 | INFO     | using path: /var/lib/boinc/var/slot64/slots/10/PanDA_Pilot-7039032746/memory_monitor_summary.json (trf name=prmon)
[2026-03-09 10:54:38] 2026-03-09 09:53:39,148 | INFO     | extracted standard info from prmon json
[2026-03-09 10:54:38] 2026-03-09 09:53:39,148 | INFO     | extracted standard memory fields from prmon json
[2026-03-09 10:54:38] 2026-03-09 09:53:39,148 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-03-09 10:54:38] 2026-03-09 09:53:39,148 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-03-09 10:54:38] 2026-03-09 09:53:39,148 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-03-09 10:54:38] 2026-03-09 09:53:39,152 | INFO     | fitting pss+swap vs Time
[2026-03-09 10:54:38] 2026-03-09 09:53:39,152 | INFO     | sum of square deviations: 2370641658.0
[2026-03-09 10:54:38] 2026-03-09 09:53:39,154 | INFO     | sum of deviations: 8832941703.000004
[2026-03-09 10:54:38] 2026-03-09 09:53:39,154 | INFO     | mean x: 1773044024.0
[2026-03-09 10:54:38] 2026-03-09 09:53:39,154 | INFO     | mean y: 2301751.8578680204
[2026-03-09 10:54:38] 2026-03-09 09:53:39,154 | INFO     | intersect: -6604008589.476958
[2026-03-09 10:54:38] 2026-03-09 09:53:39,154 | INFO     | chi2: 2.603995834441576
[2026-03-09 10:54:38] 2026-03-09 09:53:39,155 | INFO     | sum of square deviations: 2194675568.0
[2026-03-09 10:54:38] 2026-03-09 09:53:39,156 | INFO     | sum of deviations: 20811509934.0
[2026-03-09 10:54:38] 2026-03-09 09:53:39,156 | INFO     | mean x: 1773043871.5
[2026-03-09 10:54:38] 2026-03-09 09:53:39,156 | INFO     | mean y: 2311912.2708333335
[2026-03-09 10:54:38] 2026-03-09 09:53:39,156 | INFO     | intersect: -16810979620.730852
[2026-03-09 10:54:38] 2026-03-09 09:53:39,157 | INFO     | chi2: 1.8042422430540654
[2026-03-09 10:54:38] 2026-03-09 09:53:39,157 | INFO     | current chi2=1.8042422430540654 (change=30.712552639663375 %)
[2026-03-09 10:54:38] 2026-03-09 09:53:39,157 | INFO     | sum of square deviations: 2027639878.0
[2026-03-09 10:54:38] 2026-03-09 09:53:39,158 | INFO     | sum of deviations: 20182134748.0
[2026-03-09 10:54:38] 2026-03-09 09:53:39,158 | INFO     | mean x: 1773043719.0
[2026-03-09 10:54:38] 2026-03-09 09:53:39,159 | INFO     | mean y: 2311337.4866310162
[2026-03-09 10:54:38] 2026-03-09 09:53:39,159 | INFO     | intersect: -17645697877.171875
[2026-03-09 10:54:38] 2026-03-09 09:53:39,159 | INFO     | chi2: 1.8058125438834778
[2026-03-09 10:54:38] 2026-03-09 09:53:39,159 | INFO     | current chi2=1.8058125438834778 (change=-0.08703381352795905 %)
[2026-03-09 10:54:38] 2026-03-09 09:53:39,159 | INFO     | right removable region: 186
[2026-03-09 10:54:38] 2026-03-09 09:53:39,159 | INFO     | sum of square deviations: 2194675568.0
[2026-03-09 10:54:38] 2026-03-09 09:53:39,161 | INFO     | sum of deviations: -23986219920.0
[2026-03-09 10:54:38] 2026-03-09 09:53:39,161 | INFO     | mean x: 1773044176.5
[2026-03-09 10:54:38] 2026-03-09 09:53:39,161 | INFO     | mean y: 2329923.53125
[2026-03-09 10:54:38] 2026-03-09 09:53:39,161 | INFO     | intersect: 19380423052.877235
[2026-03-09 10:54:38] 2026-03-09 09:53:39,161 | INFO     | chi2: 0.8904613310298488
[2026-03-09 10:54:38] 2026-03-09 09:53:39,162 | INFO     | current chi2=0.8904613310298488 (change=65.80404164813854 %)
[2026-03-09 10:54:38] 2026-03-09 09:53:39,162 | INFO     | sum of square deviations: 2027639878.0
[2026-03-09 10:54:38] 2026-03-09 09:53:39,163 | INFO     | sum of deviations: -23285271543.0
[2026-03-09 10:54:38] 2026-03-09 09:53:39,163 | INFO     | mean x: 1773044329.0
[2026-03-09 10:54:38] 2026-03-09 09:53:39,163 | INFO     | mean y: 2329240.449197861
[2026-03-09 10:54:38] 2026-03-09 09:53:39,163 | INFO     | intersect: 20363843682.187374
[2026-03-09 10:54:38] 2026-03-09 09:53:39,164 | INFO     | chi2: 0.8785980842691037
[2026-03-09 10:54:38] 2026-03-09 09:53:39,164 | INFO     | current chi2=0.8785980842691037 (change=1.332258498751976 %)
[2026-03-09 10:54:38] 2026-03-09 09:53:39,164 | INFO     | left removable region: 20
[2026-03-09 10:54:38] 2026-03-09 09:53:39,164 | INFO     | sum of square deviations: 1418361477.5
[2026-03-09 10:54:38] 2026-03-09 09:53:39,165 | INFO     | sum of deviations: -2701126360.000001
[2026-03-09 10:54:38] 2026-03-09 09:53:39,165 | INFO     | mean x: 1773044298.5
[2026-03-09 10:54:38] 2026-03-09 09:53:39,165 | INFO     | mean y: 2331795.6626506024
[2026-03-09 10:54:38] 2026-03-09 09:53:39,166 | INFO     | intersect: 3378915810.4566226
[2026-03-09 10:54:38] 2026-03-09 09:53:39,166 | INFO     | chi2: 0.016376953275252758
[2026-03-09 10:54:38] 2026-03-09 09:53:39,166 | INFO     | current memory leak: -1.90 B/s (using 166 data points, chi2=0.02)
[2026-03-09 10:54:38] 2026-03-09 09:53:39,166 | INFO     | could have reported an average CPU frequency of 1496 MHz (10 samples)
[2026-03-09 10:54:38] 2026-03-09 09:53:39,167 | INFO     | ..............................
[2026-03-09 10:54:38] 2026-03-09 09:53:39,167 | INFO     | . Timing measurements:
[2026-03-09 10:54:38] 2026-03-09 09:53:39,167 | INFO     | . get job = 0 s
[2026-03-09 10:54:38] 2026-03-09 09:53:39,167 | INFO     | . initial setup = 23 s
[2026-03-09 10:54:38] 2026-03-09 09:53:39,167 | INFO     | . payload setup = 26 s
[2026-03-09 10:54:38] 2026-03-09 09:53:39,167 | INFO     | . stage-in = 0 s
[2026-03-09 10:54:38] 2026-03-09 09:53:39,167 | INFO     | . payload execution = 11991 s
[2026-03-09 10:54:38] 2026-03-09 09:53:39,167 | INFO     | . stage-out = 1 s
[2026-03-09 10:54:38] 2026-03-09 09:53:39,167 | INFO     | . log creation = 0 s
[2026-03-09 10:54:38] 2026-03-09 09:53:39,167 | INFO     | ..............................
[2026-03-09 10:54:38] 2026-03-09 09:53:39,626 | INFO     | 
[2026-03-09 10:54:38] 2026-03-09 09:53:39,627 | INFO     | job summary report
[2026-03-09 10:54:38] 2026-03-09 09:53:39,627 | INFO     | --------------------------------------------------
[2026-03-09 10:54:38] 2026-03-09 09:53:39,627 | INFO     | PanDA job id: 7039032746
[2026-03-09 10:54:38] 2026-03-09 09:53:39,627 | INFO     | task id: 48955010
[2026-03-09 10:54:38] 2026-03-09 09:53:39,627 | INFO     | errors: (none)
[2026-03-09 10:54:38] 2026-03-09 09:53:39,627 | INFO     | status: LOG_TRANSFER = DONE 
[2026-03-09 10:54:38] 2026-03-09 09:53:39,627 | INFO     | pilot state: finished 
[2026-03-09 10:54:38] 2026-03-09 09:53:39,627 | INFO     | transexitcode: 0
[2026-03-09 10:54:38] 2026-03-09 09:53:39,627 | INFO     | exeerrorcode: 0
[2026-03-09 10:54:38] 2026-03-09 09:53:39,627 | INFO     | exeerrordiag: 
[2026-03-09 10:54:38] 2026-03-09 09:53:39,627 | INFO     | exitcode: 0
[2026-03-09 10:54:38] 2026-03-09 09:53:39,627 | INFO     | exitmsg: OK
[2026-03-09 10:54:38] 2026-03-09 09:53:39,628 | INFO     | cpuconsumptiontime: 44752 s
[2026-03-09 10:54:38] 2026-03-09 09:53:39,628 | INFO     | nevents: 400
[2026-03-09 10:54:38] 2026-03-09 09:53:39,628 | INFO     | neventsw: 0
[2026-03-09 10:54:38] 2026-03-09 09:53:39,628 | INFO     | pid: 1797319
[2026-03-09 10:54:38] 2026-03-09 09:53:39,628 | INFO     | pgrp: 1797319
[2026-03-09 10:54:38] 2026-03-09 09:53:39,628 | INFO     | corecount: 4
[2026-03-09 10:54:38] 2026-03-09 09:53:39,628 | INFO     | event service: False
[2026-03-09 10:54:38] 2026-03-09 09:53:39,628 | INFO     | sizes: {0: 2279756, 1: 2280217, 2: 2280245, 12021: 2310209, 12022: 2319259, 12024: 2319315, 12026: 2319637}
[2026-03-09 10:54:38] 2026-03-09 09:53:39,628 | INFO     | --------------------------------------------------
[2026-03-09 10:54:38] 2026-03-09 09:53:39,628 | INFO     | 
[2026-03-09 10:54:38] 2026-03-09 09:53:39,629 | INFO     | executing command: ls -lF /var/lib/boinc/var/slot64/slots/10
[2026-03-09 10:54:38] 2026-03-09 09:53:39,659 | INFO     | queue jobs had 0 job(s) [purged]
[2026-03-09 10:54:38] 2026-03-09 09:53:39,659 | INFO     | queue payloads had 0 job(s) [purged]
[2026-03-09 10:54:38] 2026-03-09 09:53:39,659 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-09 10:54:38] 2026-03-09 09:53:39,659 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-09 10:54:38] 2026-03-09 09:53:39,659 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-09 10:54:38] 2026-03-09 09:53:39,660 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-09 10:54:38] 2026-03-09 09:53:39,660 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-09 10:54:38] 2026-03-09 09:53:39,660 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-09 10:54:38] 2026-03-09 09:53:39,660 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-09 10:54:38] 2026-03-09 09:53:39,660 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-09 10:54:38] 2026-03-09 09:53:39,660 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-09 10:54:38] 2026-03-09 09:53:39,660 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-09 10:54:38] 2026-03-09 09:53:39,660 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-09 10:54:38] 2026-03-09 09:53:39,660 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-09 10:54:38] 2026-03-09 09:53:39,660 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-09 10:54:38] 2026-03-09 09:53:39,660 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-09 10:54:38] 2026-03-09 09:53:39,661 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-09 10:54:38] 2026-03-09 09:53:39,661 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-09 10:54:38] 2026-03-09 09:53:39,661 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-09 10:54:38] 2026-03-09 09:53:39,661 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-09 10:54:38] 2026-03-09 09:53:39,661 | INFO     | job 7039032746 has completed (purged errors)
[2026-03-09 10:54:38] 2026-03-09 09:53:39,661 | INFO     | overall cleanup function is called
[2026-03-09 10:54:38] 2026-03-09 09:53:40,670 | INFO     | --- collectZombieJob: --- 10, [1797319]
[2026-03-09 10:54:38] 2026-03-09 09:53:40,670 | INFO     | zombie collector waiting for pid 1797319
[2026-03-09 10:54:38] 2026-03-09 09:53:40,671 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-09 10:54:38] 2026-03-09 09:53:40,671 | INFO     | collected zombie processes
[2026-03-09 10:54:38] 2026-03-09 09:53:40,671 | INFO     | will attempt to kill all subprocesses of pid=1797319
[2026-03-09 10:54:38] 2026-03-09 09:53:41,494 | INFO     | PID=1791139 has CPU usage=27.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2026-03-09 10:54:38] 2026-03-09 09:53:41,494 | INFO     | .. there are 24 such processes running
[2026-03-09 10:54:38] 2026-03-09 09:53:42,024 | INFO     | process IDs to be killed: [1797319] (in reverse order)
[2026-03-09 10:54:38] 2026-03-09 09:53:42,390 | WARNING  | found no corresponding commands to process id(s)
[2026-03-09 10:54:38] 2026-03-09 09:53:42,391 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-09 10:54:38] 2026-03-09 09:53:42,423 | INFO     | did not find any defunct processes belonging to 1797319
[2026-03-09 10:54:38] 2026-03-09 09:53:42,452 | INFO     | did not find any defunct processes belonging to 1797319
[2026-03-09 10:54:38] 2026-03-09 09:53:42,452 | INFO     | ready for new job
[2026-03-09 10:54:38] 2026-03-09 09:53:42,453 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-09 10:54:38] 2026-03-09 09:53:42,455 | INFO     | **************************************
[2026-03-09 10:54:38] 2026-03-09 09:53:42,455 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-03-09 10:54:38] 2026-03-09 09:53:42,455 | INFO     | **************************************
[2026-03-09 10:54:38] 2026-03-09 09:53:42,455 | INFO     | 
[2026-03-09 10:54:38] 2026-03-09 09:53:42,467 | INFO     | architecture information:
[2026-03-09 10:54:38] 2026-03-09 09:53:42,468 | INFO     | executing command: cat /etc/os-release
[2026-03-09 10:54:38] 2026-03-09 09:53:42,492 | INFO     | cat /etc/os-release:
[2026-03-09 10:54:38] NAME="CentOS Linux"
[2026-03-09 10:54:38] VERSION="7 (Core)"
[2026-03-09 10:54:38] ID="centos"
[2026-03-09 10:54:38] ID_LIKE="rhel fedora"
[2026-03-09 10:54:38] VERSION_ID="7"
[2026-03-09 10:54:38] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-09 10:54:38] ANSI_COLOR="0;31"
[2026-03-09 10:54:38] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-09 10:54:38] HOME_URL="https://www.centos.org/"
[2026-03-09 10:54:38] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-09 10:54:38] 
[2026-03-09 10:54:38] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-09 10:54:38] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-09 10:54:38] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-09 10:54:38] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-09 10:54:38] 
[2026-03-09 10:54:38] 2026-03-09 09:53:42,492 | INFO     | **************************************
[2026-03-09 10:54:38] 2026-03-09 09:53:42,994 | INFO     | executing command: df -mP /var/lib/boinc/var/slot64/slots/10
[2026-03-09 10:54:38] 2026-03-09 09:53:43,034 | INFO     | sufficient remaining disk space (175963635712 B)
[2026-03-09 10:54:38] 2026-03-09 09:53:43,036 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-09 10:54:38] 2026-03-09 09:53:43,036 | INFO     | current server update state: UPDATING_FINAL
[2026-03-09 10:54:38] 2026-03-09 09:53:43,036 | INFO     | update_server=False
[2026-03-09 10:54:38] 2026-03-09 09:53:43,036 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-09 10:54:38] 2026-03-09 09:53:43,037 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-09 10:54:38] 2026-03-09 09:53:43,156 | INFO     | all data control threads have been joined
[2026-03-09 10:54:38] 2026-03-09 09:53:43,439 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-03-09 10:54:38] 2026-03-09 09:53:43,439 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-03-09 10:54:38] 2026-03-09 09:53:43,440 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-09 10:54:38] 2026-03-09 09:53:43,440 | INFO     | will abort loop
[2026-03-09 10:54:38] 2026-03-09 09:53:43,448 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-09 10:54:38] 2026-03-09 09:53:44,041 | INFO     | [job] retrieve thread has finished
[2026-03-09 10:54:38] 2026-03-09 09:53:44,161 | INFO     | [data] control thread has finished
[2026-03-09 10:54:38] 2026-03-09 09:53:44,187 | INFO     | all payload control threads have been joined
[2026-03-09 10:54:38] 2026-03-09 09:53:44,271 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-09 10:54:38] 2026-03-09 09:53:44,288 | INFO     | [payload] failed_post thread has finished
[2026-03-09 10:54:38] 2026-03-09 09:53:44,444 | INFO     | [job] job monitor thread has finished
[2026-03-09 10:54:38] 2026-03-09 09:53:44,534 | INFO     | [payload] validate_post thread has finished
[2026-03-09 10:54:38] 2026-03-09 09:53:44,554 | INFO     | all job control threads have been joined
[2026-03-09 10:54:38] 2026-03-09 09:53:44,571 | INFO     | [payload] validate_pre thread has finished
[2026-03-09 10:54:38] 2026-03-09 09:53:44,629 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-09 10:54:38] 2026-03-09 09:53:44,677 | INFO     | [job] create_data_payload thread has finished
[2026-03-09 10:54:38] 2026-03-09 09:53:45,192 | INFO     | [payload] control thread has finished
[2026-03-09 10:54:38] 2026-03-09 09:53:45,276 | INFO     | [job] queue monitor thread has finished
[2026-03-09 10:54:38] 2026-03-09 09:53:45,318 | INFO     | [payload] execute_payloads thread has finished
[2026-03-09 10:54:38] 2026-03-09 09:53:45,374 | INFO     | [job] validate thread has finished
[2026-03-09 10:54:38] 2026-03-09 09:53:45,453 | INFO     | [data] copytool_out thread has finished
[2026-03-09 10:54:38] 2026-03-09 09:53:45,495 | INFO     | [data] copytool_in thread has finished
[2026-03-09 10:54:38] 2026-03-09 09:53:45,559 | INFO     | [job] control thread has finished
[2026-03-09 10:54:38] 2026-03-09 09:53:47,043 | INFO     | [data] queue_monitor thread has finished
[2026-03-09 10:54:38] 2026-03-09 09:54:14,512 | INFO     | PID=1791139 has CPU usage=7.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-03-09 10:54:38] 2026-03-09 09:54:14,515 | INFO     | .. there are 23 such processes running
[2026-03-09 10:54:38] 2026-03-09 09:54:14,515 | INFO     | found 0 job(s) in 20 queues
[2026-03-09 10:54:38] 2026-03-09 09:54:14,515 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-09 10:54:38] 2026-03-09 09:54:14,515 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-09 10:54:38] 2026-03-09 09:54:30,469 | INFO     | [monitor] cgroup control has ended
[2026-03-09 10:54:38] 2026-03-09 09:54:32,530 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23373540202304)>', '<ExcThread(monitor, started 23373295126272)>']
[2026-03-09 10:54:38] 2026-03-09 09:54:32,606 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-09 10:54:38] 2026-03-09 09:54:32,606 | INFO     | [monitor] control thread has ended
[2026-03-09 10:54:38] 2026-03-09 09:54:37,561 | INFO     | all workflow threads have been joined
[2026-03-09 10:54:38] 2026-03-09 09:54:37,563 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-09 10:54:38] 2026-03-09 09:54:37,563 | INFO     | traces error code: 0
[2026-03-09 10:54:38] 2026-03-09 09:54:37,563 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-09 10:54:38] 2026-03-09 09:54:37,773 [wrapper] ==== pilot stdout END ====
[2026-03-09 10:54:38] 2026-03-09 09:54:37,777 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-09 10:54:38] 2026-03-09 09:54:37,781 [wrapper] pilotpid: 1791139
[2026-03-09 10:54:38] 2026-03-09 09:54:37,785 [wrapper] Pilot exit status: 0
[2026-03-09 10:54:38] 2026-03-09 09:54:37,799 [wrapper] pandaids: 7039032746
[2026-03-09 10:54:38] 2026-03-09 09:54:38,001 [wrapper] cleanup supervisor_pilot 2254471 1791140
[2026-03-09 10:54:38] 2026-03-09 09:54:38,008 [wrapper] Test setup, not cleaning
[2026-03-09 10:54:38] 2026-03-09 09:54:38,013 [wrapper] apfmon messages muted
[2026-03-09 10:54:38] 2026-03-09 09:54:38,017 [wrapper] ==== wrapper stdout END ====
[2026-03-09 10:54:38] 2026-03-09 09:54:38,023 [wrapper] ==== wrapper stderr END ====
[2026-03-09 10:54:38]  *** Error codes and diagnostics ***
[2026-03-09 10:54:38]     "exeErrorCode": 0,
[2026-03-09 10:54:38]     "exeErrorDiag": "",
[2026-03-09 10:54:38]     "pilotErrorCode": 0,
[2026-03-09 10:54:38]     "pilotErrorDiag": "",
[2026-03-09 10:54:38]  *** Listing of results directory ***
[2026-03-09 10:54:38] total 618332
[2026-03-09 10:54:38] -rw-r--r--. 1 boinc boinc    584627 Mar  7 10:08 pilot3.tar.gz
[2026-03-09 10:54:38] -rwx------. 1 boinc boinc     36322 Mar  7 10:09 runpilot2-wrapper.sh
[2026-03-09 10:54:38] -rw-r--r--. 1 boinc boinc      5111 Mar  7 10:09 queuedata.json
[2026-03-09 10:54:38] -rw-r--r--. 1 boinc boinc       100 Mar  9 07:31 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-09 10:54:38] -rwxr-xr-x. 1 boinc boinc      7986 Mar  9 07:31 run_atlas
[2026-03-09 10:54:38] -rw-r--r--. 1 boinc boinc       105 Mar  9 07:31 job.xml
[2026-03-09 10:54:38] -rw-r--r--. 2 boinc boinc 441971904 Mar  9 07:32 EVNT.46701403._001194.pool.root.1
[2026-03-09 10:54:38] -rw-r--r--. 1 boinc boinc      6693 Mar  9 07:32 init_data.xml
[2026-03-09 10:54:38] -rw-r--r--. 2 boinc boinc     15845 Mar  9 07:32 start_atlas.sh
[2026-03-09 10:54:38] drwxrwx--x. 2 boinc boinc      4096 Mar  9 07:32 shared
[2026-03-09 10:54:38] -rw-r--r--. 2 boinc boinc    597951 Mar  9 07:32 input.tar.gz
[2026-03-09 10:54:38] -rw-r--r--. 1 boinc boinc         0 Mar  9 07:32 boinc_lockfile
[2026-03-09 10:54:38] -rw-r--r--. 1 boinc boinc      2562 Mar  9 07:32 pandaJob.out
[2026-03-09 10:54:38] -rw-------. 1 boinc boinc    999108 Mar  9 07:32 agis_schedconf.cvmfs.json
[2026-03-09 10:54:38] -rw-------. 1 boinc boinc       443 Mar  9 07:33 workernode_map.json
[2026-03-09 10:54:38] drwx------. 5 boinc boinc      4096 Mar  9 07:33 pilot3
[2026-03-09 10:54:38] -rw-------. 1 boinc boinc 183342364 Mar  9 10:53 HITS.48955010._009662.pool.root.1
[2026-03-09 10:54:38] -rw-r--r--. 1 boinc boinc       531 Mar  9 10:53 boinc_task_state.xml
[2026-03-09 10:54:38] -rw-------. 1 boinc boinc      1027 Mar  9 10:53 memory_monitor_summary.json
[2026-03-09 10:54:38] -rw-------. 1 boinc boinc   1511578 Mar  9 10:53 agis_ddmendpoints.agis.ALL.json
[2026-03-09 10:54:38] -rw-------. 1 boinc boinc    361266 Mar  9 10:53 log.48955010._009662.job.log.tgz.1
[2026-03-09 10:54:38] -rw-------. 1 boinc boinc        95 Mar  9 10:53 pilot_heartbeat.json
[2026-03-09 10:54:38] -rw-------. 1 boinc boinc      6353 Mar  9 10:53 heartbeat.json
[2026-03-09 10:54:38] -rw-r--r--. 1 boinc boinc      8192 Mar  9 10:54 boinc_mmap_file
[2026-03-09 10:54:38] -rw-r--r--. 1 boinc boinc        28 Mar  9 10:54 wrapper_checkpoint.txt
[2026-03-09 10:54:38] -rw-------. 1 boinc boinc      5017 Mar  9 10:54 pilotlog.txt
[2026-03-09 10:54:38] -rw-------. 1 boinc boinc   1602249 Mar  9 10:54 log.48955010._009662.job.log.1
[2026-03-09 10:54:38] -rw-------. 1 boinc boinc       357 Mar  9 10:54 output.list
[2026-03-09 10:54:38] -rw-r--r--. 1 boinc boinc       620 Mar  9 10:54 runtime_log
[2026-03-09 10:54:38] -rw-------. 1 boinc boinc   1976320 Mar  9 10:54 result.tar.gz
[2026-03-09 10:54:38] -rw-r--r--. 1 boinc boinc      9222 Mar  9 10:54 runtime_log.err
[2026-03-09 10:54:38] -rw-------. 1 boinc boinc       666 Mar  9 10:54 rYBLDmCq2I9nsSi4ap6QjLDmwznN0nGgGQJmIVkRDmYKVLDmDCDCXn.diag
[2026-03-09 10:54:38] -rw-r--r--. 1 boinc boinc     20952 Mar  9 10:54 stderr.txt
[2026-03-09 10:54:38] HITS file was successfully produced:
[2026-03-09 10:54:38] -rw-------. 1 boinc boinc 183342364 Mar  9 10:53 shared/HITS.pool.root.1
[2026-03-09 10:54:38]  *** Contents of shared directory: ***
[2026-03-09 10:54:38] total 613204
[2026-03-09 10:54:38] -rw-r--r--. 2 boinc boinc 441971904 Mar  9 07:32 ATLAS.root_0
[2026-03-09 10:54:38] -rw-r--r--. 2 boinc boinc     15845 Mar  9 07:32 start_atlas.sh
[2026-03-09 10:54:38] -rw-r--r--. 2 boinc boinc    597951 Mar  9 07:32 input.tar.gz
[2026-03-09 10:54:38] -rw-------. 1 boinc boinc 183342364 Mar  9 10:53 HITS.pool.root.1
[2026-03-09 10:54:38] -rw-------. 1 boinc boinc   1976320 Mar  9 10:54 result.tar.gz
10:54:39 (1786583): run_atlas exited; CPU time 45813.234737
10:54:39 (1786583): called boinc_finish(0)

</stderr_txt>
]]>

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