Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
17:53:40 (280730): wrapper (7.7.26015): starting
17:53:40 (280730): wrapper: running run_atlas (--nthreads 4)
[2026-03-07 17:53:40] Arguments: --nthreads 4
[2026-03-07 17:53:40] Threads: 4
[2026-03-07 17:53:40] Checking for CVMFS
[2026-03-07 17:53:40] No cvmfs_config command found, will try listing directly
[2026-03-07 17:53:40] CVMFS is ok
[2026-03-07 17:53:40] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-07 17:53:40] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-07 17:53:40] Further information can be found at the LHC@home message board.
[2026-03-07 17:53:40] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-07 17:53:40] Checking for apptainer binary...
[2026-03-07 17:53:40] which: no apptainer in ((null))
[2026-03-07 17:53:40] apptainer is not installed, using version from CVMFS
[2026-03-07 17:53:40] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-07 17:53:41] WARNING: Environment variable TMPDIR already has value [/var/lib/boinc/var/slot48/slots/2/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut18.grid.cesnet.cz
[2026-03-07 17:53:41] apptainer works
[2026-03-07 17:53:41] Set ATHENA_PROC_NUMBER=4
[2026-03-07 17:53:41] Set ATHENA_CORE_NUMBER=4
[2026-03-07 17:53:41] Starting ATLAS job with PandaID=7044575476
[2026-03-07 17:53:41] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc/var/slot48/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-07 19:27:12]  *** The last 200 lines of the pilot log: ***
[2026-03-07 19:27:12]  replicas=None
[2026-03-07 19:27:12]  scope=mc23_13p6TeV
[2026-03-07 19:27:12]  status=None
[2026-03-07 19:27:12]  status_code=0
[2026-03-07 19:27:12]  storage_token=
[2026-03-07 19:27:12]  surl=/var/lib/boinc/var/slot48/slots/2/PanDA_Pilot-7044575476/log.48958635._001495.job.log.tgz.1
[2026-03-07 19:27:12]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/4a/d6/log.48958635._001495.job.log.tgz.1
[2026-03-07 19:27:12]  workdir=None
[2026-03-07 19:27:12] ]
[2026-03-07 19:27:12] 2026-03-07 18:26:10,135 | INFO     | transferring file log.48958635._001495.job.log.tgz.1 from /var/lib/boinc/var/slot48/slots/2/PanDA_Pilot-7044575476/log.48958635._001495.job.log.tgz.1 to /var/lib/b
[2026-03-07 19:27:12] 2026-03-07 18:26:10,135 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc/var/slot48/slots/2/PanDA_Pilot-7044575476/log.48958635._001495.job.log.tgz.1 /var/lib/boinc/var/slot48/slots/2/lo
[2026-03-07 19:27:12] 2026-03-07 18:26:10,151 | INFO     | adding to output.list: log.48958635._001495.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/4a/d6/log.48958635._001495.job.log.tg
[2026-03-07 19:27:12] 2026-03-07 18:26:10,152 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-03-07 19:27:12] 2026-03-07 18:26:10,152 | INFO     | summary of transferred files:
[2026-03-07 19:27:12] 2026-03-07 18:26:10,152 | INFO     |  -- lfn=log.48958635._001495.job.log.tgz.1, status_code=0, status=transferred
[2026-03-07 19:27:12] 2026-03-07 18:26:10,153 | INFO     | stage-out finished correctly
[2026-03-07 19:27:12] 2026-03-07 18:26:10,293 | INFO     | time since job start (5533s) is within the limit (349056.0s)
[2026-03-07 19:27:12] 2026-03-07 18:26:11,427 | WARNING  | process 305521 can no longer be monitored (due to stat problems) - aborting
[2026-03-07 19:27:12] 2026-03-07 18:26:11,428 | INFO     | using path: /var/lib/boinc/var/slot48/slots/2/PanDA_Pilot-7044575476/memory_monitor_summary.json (trf name=prmon)
[2026-03-07 19:27:12] 2026-03-07 18:26:11,429 | INFO     | reaping zombies for max 20 seconds
[2026-03-07 19:27:12] 2026-03-07 18:26:11,442 | INFO     | checking for looping job (in state=finished)
[2026-03-07 19:27:12] 2026-03-07 18:26:11,442 | INFO     | using looping job limit: 7200 s
[2026-03-07 19:27:12] 2026-03-07 18:26:11,965 | INFO     | number of running child processes to parent process 305521: 1
[2026-03-07 19:27:12] 2026-03-07 18:26:11,965 | INFO     | maximum number of monitored processes: 6
[2026-03-07 19:27:12] 2026-03-07 18:26:12,290 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-03-07 19:27:12] 2026-03-07 18:26:12,302 | INFO     | time since job start (5535s) is within the limit (349056.0s)
[2026-03-07 19:27:12] 2026-03-07 18:26:14,270 | INFO     | job 7044575476 has state=finished
[2026-03-07 19:27:12] 2026-03-07 18:26:14,271 | INFO     | preparing for final server update for job 7044575476 in state='finished'
[2026-03-07 19:27:12] 2026-03-07 18:26:14,318 | INFO     | time since job start (5537s) is within the limit (349056.0s)
[2026-03-07 19:27:12] 2026-03-07 18:26:14,467 | INFO     | monitor loop #389: job 0:7044575476 is in state 'finished'
[2026-03-07 19:27:12] 2026-03-07 18:26:14,467 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-03-07 19:27:12] 2026-03-07 18:26:14,818 | INFO     | sent prmon JSON dictionary to logstash server (urllib method)
[2026-03-07 19:27:12] 2026-03-07 18:26:14,818 | INFO     | reading metadata from: /var/lib/boinc/var/slot48/slots/2/PanDA_Pilot-7044575476/jobReport.json
[2026-03-07 19:27:12] 2026-03-07 18:26:14,820 | INFO     | added worker_node to metadata from /var/lib/boinc/var/slot48/slots/2/workernode_map.json
[2026-03-07 19:27:12] 2026-03-07 18:26:14,820 | INFO     | this job has now completed (state=finished)
[2026-03-07 19:27:12] 2026-03-07 18:26:14,820 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-03-07 19:27:12] 2026-03-07 18:26:14,820 | INFO     | log transfer has been attempted: DONE
[2026-03-07 19:27:12] 2026-03-07 18:26:14,820 | INFO     | job 7044575476 has finished - writing final server update
[2026-03-07 19:27:12] 2026-03-07 18:26:14,820 | WARNING  | failed to read HTCondor job classAd: [Errno 2] No such file or directory: '/scratch/condor/execute/dir_2274779/.job.ad'
[2026-03-07 19:27:12] 2026-03-07 18:26:14,820 | INFO     | total number of processed events: 400 (read)
[2026-03-07 19:27:12] 2026-03-07 18:26:14,838 | INFO     | using path: /var/lib/boinc/var/slot48/slots/2/PanDA_Pilot-7044575476/memory_monitor_summary.json (trf name=prmon)
[2026-03-07 19:27:12] 2026-03-07 18:26:14,839 | INFO     | extracted standard info from prmon json
[2026-03-07 19:27:12] 2026-03-07 18:26:14,839 | INFO     | extracted standard memory fields from prmon json
[2026-03-07 19:27:12] 2026-03-07 18:26:14,839 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-03-07 19:27:12] 2026-03-07 18:26:14,839 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-03-07 19:27:12] 2026-03-07 18:26:14,839 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-03-07 19:27:12] 2026-03-07 18:26:14,840 | INFO     | fitting pss+swap vs Time
[2026-03-07 19:27:12] 2026-03-07 18:26:14,840 | INFO     | sum of square deviations: 183761585.0
[2026-03-07 19:27:12] 2026-03-07 18:26:14,840 | INFO     | sum of deviations: 549901671.5
[2026-03-07 19:27:12] 2026-03-07 18:26:14,841 | INFO     | mean x: 1772905305.5
[2026-03-07 19:27:12] 2026-03-07 18:26:14,841 | INFO     | mean y: 2334784.9166666665
[2026-03-07 19:27:12] 2026-03-07 18:26:14,841 | INFO     | intersect: -5303037341.176326
[2026-03-07 19:27:12] 2026-03-07 18:26:14,841 | INFO     | chi2: 0.00027886847327271685
[2026-03-07 19:27:12] 2026-03-07 18:26:14,841 | INFO     | current memory leak: 2.99 B/s (using 84 data points, chi2=0.00)
[2026-03-07 19:27:12] 2026-03-07 18:26:14,841 | INFO     | could have reported an average CPU frequency of 3507 MHz (7 samples)
[2026-03-07 19:27:12] 2026-03-07 18:26:14,841 | INFO     | ..............................
[2026-03-07 19:27:12] 2026-03-07 18:26:14,841 | INFO     | . Timing measurements:
[2026-03-07 19:27:12] 2026-03-07 18:26:14,841 | INFO     | . get job = 0 s
[2026-03-07 19:27:12] 2026-03-07 18:26:14,842 | INFO     | . initial setup = 5 s
[2026-03-07 19:27:12] 2026-03-07 18:26:14,842 | INFO     | . payload setup = 11 s
[2026-03-07 19:27:12] 2026-03-07 18:26:14,842 | INFO     | . stage-in = 0 s
[2026-03-07 19:27:12] 2026-03-07 18:26:14,842 | INFO     | . payload execution = 5504 s
[2026-03-07 19:27:12] 2026-03-07 18:26:14,842 | INFO     | . stage-out = 0 s
[2026-03-07 19:27:12] 2026-03-07 18:26:14,842 | INFO     | . log creation = 0 s
[2026-03-07 19:27:12] 2026-03-07 18:26:14,842 | INFO     | ..............................
[2026-03-07 19:27:12] 2026-03-07 18:26:14,904 | INFO     | 
[2026-03-07 19:27:12] 2026-03-07 18:26:14,904 | INFO     | job summary report
[2026-03-07 19:27:12] 2026-03-07 18:26:14,904 | INFO     | --------------------------------------------------
[2026-03-07 19:27:12] 2026-03-07 18:26:14,904 | INFO     | PanDA job id: 7044575476
[2026-03-07 19:27:12] 2026-03-07 18:26:14,905 | INFO     | task id: 48958635
[2026-03-07 19:27:12] 2026-03-07 18:26:14,905 | INFO     | errors: (none)
[2026-03-07 19:27:12] 2026-03-07 18:26:14,905 | INFO     | status: LOG_TRANSFER = DONE 
[2026-03-07 19:27:12] 2026-03-07 18:26:14,905 | INFO     | pilot state: finished 
[2026-03-07 19:27:12] 2026-03-07 18:26:14,905 | INFO     | transexitcode: 0
[2026-03-07 19:27:12] 2026-03-07 18:26:14,905 | INFO     | exeerrorcode: 0
[2026-03-07 19:27:12] 2026-03-07 18:26:14,905 | INFO     | exeerrordiag: 
[2026-03-07 19:27:12] 2026-03-07 18:26:14,905 | INFO     | exitcode: 0
[2026-03-07 19:27:12] 2026-03-07 18:26:14,905 | INFO     | exitmsg: OK
[2026-03-07 19:27:12] 2026-03-07 18:26:14,905 | INFO     | cpuconsumptiontime: 20693 s
[2026-03-07 19:27:12] 2026-03-07 18:26:14,905 | INFO     | nevents: 400
[2026-03-07 19:27:12] 2026-03-07 18:26:14,905 | INFO     | neventsw: 0
[2026-03-07 19:27:12] 2026-03-07 18:26:14,905 | INFO     | pid: 305521
[2026-03-07 19:27:12] 2026-03-07 18:26:14,905 | INFO     | pgrp: 305521
[2026-03-07 19:27:12] 2026-03-07 18:26:14,905 | INFO     | corecount: 4
[2026-03-07 19:27:12] 2026-03-07 18:26:14,905 | INFO     | event service: False
[2026-03-07 19:27:12] 2026-03-07 18:26:14,905 | INFO     | sizes: {0: 2295339, 1: 2295800, 11: 2295800, 5520: 2322606, 5521: 2322605, 5522: 2331681, 5524: 2331865, 5527: 2332059}
[2026-03-07 19:27:12] 2026-03-07 18:26:14,905 | INFO     | --------------------------------------------------
[2026-03-07 19:27:12] 2026-03-07 18:26:14,905 | INFO     | 
[2026-03-07 19:27:12] 2026-03-07 18:26:14,905 | INFO     | executing command: ls -lF /var/lib/boinc/var/slot48/slots/2
[2026-03-07 19:27:12] 2026-03-07 18:26:14,920 | INFO     | queue jobs had 0 job(s) [purged]
[2026-03-07 19:27:12] 2026-03-07 18:26:14,920 | INFO     | queue payloads had 0 job(s) [purged]
[2026-03-07 19:27:12] 2026-03-07 18:26:14,920 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-07 19:27:12] 2026-03-07 18:26:14,920 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-07 19:27:12] 2026-03-07 18:26:14,921 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-07 19:27:12] 2026-03-07 18:26:14,921 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-07 19:27:12] 2026-03-07 18:26:14,921 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-07 19:27:12] 2026-03-07 18:26:14,921 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-07 19:27:12] 2026-03-07 18:26:14,921 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-07 19:27:12] 2026-03-07 18:26:14,921 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-07 19:27:12] 2026-03-07 18:26:14,921 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-07 19:27:12] 2026-03-07 18:26:14,921 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-07 19:27:12] 2026-03-07 18:26:14,921 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-07 19:27:12] 2026-03-07 18:26:14,921 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-07 19:27:12] 2026-03-07 18:26:14,921 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-07 19:27:12] 2026-03-07 18:26:14,921 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-07 19:27:12] 2026-03-07 18:26:14,921 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-07 19:27:12] 2026-03-07 18:26:14,921 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-07 19:27:12] 2026-03-07 18:26:14,921 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-07 19:27:12] 2026-03-07 18:26:14,921 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-07 19:27:12] 2026-03-07 18:26:14,921 | INFO     | job 7044575476 has completed (purged errors)
[2026-03-07 19:27:12] 2026-03-07 18:26:14,921 | INFO     | overall cleanup function is called
[2026-03-07 19:27:12] 2026-03-07 18:26:15,929 | INFO     | --- collectZombieJob: --- 10, [305521]
[2026-03-07 19:27:12] 2026-03-07 18:26:15,929 | INFO     | zombie collector waiting for pid 305521
[2026-03-07 19:27:12] 2026-03-07 18:26:15,929 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-07 19:27:12] 2026-03-07 18:26:15,929 | INFO     | collected zombie processes
[2026-03-07 19:27:12] 2026-03-07 18:26:15,930 | INFO     | will attempt to kill all subprocesses of pid=305521
[2026-03-07 19:27:12] 2026-03-07 18:26:16,441 | INFO     | process IDs to be killed: [305521] (in reverse order)
[2026-03-07 19:27:12] 2026-03-07 18:26:16,677 | WARNING  | found no corresponding commands to process id(s)
[2026-03-07 19:27:12] 2026-03-07 18:26:16,677 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-07 19:27:12] 2026-03-07 18:26:16,709 | INFO     | did not find any defunct processes belonging to 305521
[2026-03-07 19:27:12] 2026-03-07 18:26:16,746 | INFO     | did not find any defunct processes belonging to 305521
[2026-03-07 19:27:12] 2026-03-07 18:26:16,746 | INFO     | ready for new job
[2026-03-07 19:27:12] 2026-03-07 18:26:16,746 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-07 19:27:12] 2026-03-07 18:26:16,747 | INFO     | **************************************
[2026-03-07 19:27:12] 2026-03-07 18:26:16,747 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-03-07 19:27:12] 2026-03-07 18:26:16,748 | INFO     | **************************************
[2026-03-07 19:27:12] 2026-03-07 18:26:16,748 | INFO     | 
[2026-03-07 19:27:12] 2026-03-07 18:26:16,752 | INFO     | architecture information:
[2026-03-07 19:27:12] 2026-03-07 18:26:16,753 | INFO     | executing command: cat /etc/os-release
[2026-03-07 19:27:12] 2026-03-07 18:26:16,762 | INFO     | cat /etc/os-release:
[2026-03-07 19:27:12] NAME="CentOS Linux"
[2026-03-07 19:27:12] VERSION="7 (Core)"
[2026-03-07 19:27:12] ID="centos"
[2026-03-07 19:27:12] ID_LIKE="rhel fedora"
[2026-03-07 19:27:12] VERSION_ID="7"
[2026-03-07 19:27:12] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-07 19:27:12] ANSI_COLOR="0;31"
[2026-03-07 19:27:12] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-07 19:27:12] HOME_URL="https://www.centos.org/"
[2026-03-07 19:27:12] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-07 19:27:12] 
[2026-03-07 19:27:12] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-07 19:27:12] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-07 19:27:12] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-07 19:27:12] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-07 19:27:12] 
[2026-03-07 19:27:12] 2026-03-07 18:26:16,762 | INFO     | **************************************
[2026-03-07 19:27:12] 2026-03-07 18:26:17,266 | INFO     | executing command: df -mP /var/lib/boinc/var/slot48/slots/2
[2026-03-07 19:27:12] 2026-03-07 18:26:17,282 | INFO     | sufficient remaining disk space (117718384640 B)
[2026-03-07 19:27:12] 2026-03-07 18:26:17,284 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-07 19:27:12] 2026-03-07 18:26:17,284 | INFO     | current server update state: UPDATING_FINAL
[2026-03-07 19:27:12] 2026-03-07 18:26:17,284 | INFO     | update_server=False
[2026-03-07 19:27:12] 2026-03-07 18:26:17,284 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-07 19:27:12] 2026-03-07 18:26:17,652 | INFO     | all data control threads have been joined
[2026-03-07 19:27:12] 2026-03-07 18:26:17,975 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-07 19:27:12] 2026-03-07 18:26:17,976 | INFO     | aborting loop
[2026-03-07 19:27:12] 2026-03-07 18:26:18,130 | INFO     | all payload control threads have been joined
[2026-03-07 19:27:12] 2026-03-07 18:26:18,212 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-07 19:27:12] 2026-03-07 18:26:18,296 | INFO     | [job] retrieve thread has finished
[2026-03-07 19:27:12] 2026-03-07 18:26:18,332 | INFO     | [payload] validate_post thread has finished
[2026-03-07 19:27:12] 2026-03-07 18:26:18,344 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-07 19:27:12] 2026-03-07 18:26:18,357 | INFO     | all job control threads have been joined
[2026-03-07 19:27:12] 2026-03-07 18:26:18,411 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-07 19:27:12] 2026-03-07 18:26:18,519 | INFO     | [job] validate thread has finished
[2026-03-07 19:27:12] 2026-03-07 18:26:18,657 | INFO     | [data] control thread has finished
[2026-03-07 19:27:12] 2026-03-07 18:26:18,761 | INFO     | [payload] execute_payloads thread has finished
[2026-03-07 19:27:12] 2026-03-07 18:26:18,980 | INFO     | [job] job monitor thread has finished
[2026-03-07 19:27:12] 2026-03-07 18:26:19,135 | INFO     | [payload] control thread has finished
[2026-03-07 19:27:12] 2026-03-07 18:26:19,230 | INFO     | [payload] validate_pre thread has finished
[2026-03-07 19:27:12] 2026-03-07 18:26:19,248 | INFO     | [job] create_data_payload thread has finished
[2026-03-07 19:27:12] 2026-03-07 18:26:19,284 | INFO     | [payload] failed_post thread has finished
[2026-03-07 19:27:12] 2026-03-07 18:26:19,362 | INFO     | [job] control thread has finished
[2026-03-07 19:27:12] 2026-03-07 18:26:19,537 | INFO     | [data] copytool_in thread has finished
[2026-03-07 19:27:12] 2026-03-07 18:26:19,900 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-07 19:27:12] 2026-03-07 18:26:20,214 | INFO     | [data] copytool_out thread has finished
[2026-03-07 19:27:12] 2026-03-07 18:26:20,905 | INFO     | [job] queue monitor thread has finished
[2026-03-07 19:27:12] 2026-03-07 18:26:22,350 | INFO     | [data] queue_monitor thread has finished
[2026-03-07 19:27:12] 2026-03-07 18:26:48,032 | INFO     | PID=290735 has CPU usage=7.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-03-07 19:27:12] 2026-03-07 18:26:48,032 | INFO     | .. there are 56 such processes running
[2026-03-07 19:27:12] 2026-03-07 18:26:48,032 | INFO     | found 0 job(s) in 20 queues
[2026-03-07 19:27:12] 2026-03-07 18:26:48,032 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-07 19:27:12] 2026-03-07 18:26:48,032 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-07 19:27:12] 2026-03-07 18:27:06,422 | INFO     | [monitor] cgroup control has ended
[2026-03-07 19:27:12] 2026-03-07 18:27:06,663 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 22608790824768)>', '<ExcThread(monitor, started 22608545580800)>']
[2026-03-07 19:27:12] 2026-03-07 18:27:07,127 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-07 19:27:12] 2026-03-07 18:27:07,127 | INFO     | [monitor] control thread has ended
[2026-03-07 19:27:12] 2026-03-07 18:27:11,688 | INFO     | all workflow threads have been joined
[2026-03-07 19:27:12] 2026-03-07 18:27:11,688 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-07 19:27:12] 2026-03-07 18:27:11,689 | INFO     | traces error code: 0
[2026-03-07 19:27:12] 2026-03-07 18:27:11,689 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-07 19:27:12] 2026-03-07 18:27:11,815 [wrapper] ==== pilot stdout END ====
[2026-03-07 19:27:12] 2026-03-07 18:27:11,817 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-07 19:27:12] 2026-03-07 18:27:11,819 [wrapper] pilotpid: 290735
[2026-03-07 19:27:12] 2026-03-07 18:27:11,822 [wrapper] Pilot exit status: 0
[2026-03-07 19:27:12] 2026-03-07 18:27:11,829 [wrapper] pandaids: 7044575476
[2026-03-07 19:27:12] 2026-03-07 18:27:11,967 [wrapper] cleanup supervisor_pilot 1147068 290736
[2026-03-07 19:27:12] 2026-03-07 18:27:11,970 [wrapper] Test setup, not cleaning
[2026-03-07 19:27:12] 2026-03-07 18:27:11,973 [wrapper] apfmon messages muted
[2026-03-07 19:27:12] 2026-03-07 18:27:11,975 [wrapper] ==== wrapper stdout END ====
[2026-03-07 19:27:12] 2026-03-07 18:27:11,978 [wrapper] ==== wrapper stderr END ====
[2026-03-07 19:27:12]  *** Error codes and diagnostics ***
[2026-03-07 19:27:12]     "exeErrorCode": 0,
[2026-03-07 19:27:12]     "exeErrorDiag": "",
[2026-03-07 19:27:12]     "pilotErrorCode": 0,
[2026-03-07 19:27:12]     "pilotErrorDiag": "",
[2026-03-07 19:27:12]  *** Listing of results directory ***
[2026-03-07 19:27:12] total 444621
[2026-03-07 19:27:12] -rw-r--r--. 1 boinc boinc      5111 Mar  7 06:09 queuedata.json
[2026-03-07 19:27:12] -rw-r--r--. 1 boinc boinc    584627 Mar  7 06:09 pilot3.tar.gz
[2026-03-07 19:27:12] -rwx------. 1 boinc boinc     36322 Mar  7 06:10 runpilot2-wrapper.sh
[2026-03-07 19:27:12] -rw-r--r--. 1 boinc boinc       100 Mar  7 17:53 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-07 19:27:12] -rwxr-xr-x. 1 boinc boinc      7986 Mar  7 17:53 run_atlas
[2026-03-07 19:27:12] -rw-r--r--. 1 boinc boinc       105 Mar  7 17:53 job.xml
[2026-03-07 19:27:12] -rw-r--r--. 2 boinc boinc 267884779 Mar  7 17:53 EVNT.48958633._000060.pool.root.1
[2026-03-07 19:27:12] -rw-r--r--. 2 boinc boinc     15845 Mar  7 17:53 start_atlas.sh
[2026-03-07 19:27:12] drwxrwx--x. 2 boinc boinc         5 Mar  7 17:53 shared
[2026-03-07 19:27:12] -rw-r--r--. 2 boinc boinc    597929 Mar  7 17:53 input.tar.gz
[2026-03-07 19:27:12] -rw-r--r--. 1 boinc boinc      6704 Mar  7 17:53 init_data.xml
[2026-03-07 19:27:12] -rw-r--r--. 1 boinc boinc         0 Mar  7 17:53 boinc_lockfile
[2026-03-07 19:27:12] -rw-r--r--. 1 boinc boinc      2526 Mar  7 17:53 pandaJob.out
[2026-03-07 19:27:12] -rw-------. 1 boinc boinc    999185 Mar  7 17:53 agis_schedconf.cvmfs.json
[2026-03-07 19:27:12] -rw-------. 1 boinc boinc   1521291 Mar  7 17:53 agis_ddmendpoints.agis.ALL.json
[2026-03-07 19:27:12] -rw-------. 1 boinc boinc       444 Mar  7 17:53 workernode_map.json
[2026-03-07 19:27:12] drwx------. 5 boinc boinc        22 Mar  7 17:53 pilot3
[2026-03-07 19:27:12] -rw-------. 1 boinc boinc 184939034 Mar  7 19:25 HITS.48958635._001495.pool.root.1
[2026-03-07 19:27:12] -rw-r--r--. 1 boinc boinc       529 Mar  7 19:25 boinc_task_state.xml
[2026-03-07 19:27:12] -rw-------. 1 boinc boinc      1059 Mar  7 19:26 memory_monitor_summary.json
[2026-03-07 19:27:12] -rw-------. 1 boinc boinc        95 Mar  7 19:26 pilot_heartbeat.json
[2026-03-07 19:27:12] -rw-------. 1 boinc boinc    268173 Mar  7 19:26 log.48958635._001495.job.log.tgz.1
[2026-03-07 19:27:12] -rw-------. 1 boinc boinc      6379 Mar  7 19:26 heartbeat.json
[2026-03-07 19:27:12] -rw-r--r--. 1 boinc boinc      8192 Mar  7 19:27 boinc_mmap_file
[2026-03-07 19:27:12] -rw-r--r--. 1 boinc boinc        27 Mar  7 19:27 wrapper_checkpoint.txt
[2026-03-07 19:27:12] -rw-------. 1 boinc boinc      4829 Mar  7 19:27 pilotlog.txt
[2026-03-07 19:27:12] -rw-------. 1 boinc boinc    795545 Mar  7 19:27 log.48958635._001495.job.log.1
[2026-03-07 19:27:12] -rw-------. 1 boinc boinc       357 Mar  7 19:27 output.list
[2026-03-07 19:27:12] -rw-r--r--. 1 boinc boinc       620 Mar  7 19:27 runtime_log
[2026-03-07 19:27:12] -rw-------. 1 boinc boinc   1085440 Mar  7 19:27 result.tar.gz
[2026-03-07 19:27:12] -rw-r--r--. 1 boinc boinc      9204 Mar  7 19:27 runtime_log.err
[2026-03-07 19:27:12] -rw-------. 1 boinc boinc       669 Mar  7 19:27 bYlLDmc6yI9n9Rq4apOajLDm4fhM0noT9bVooX4SDmRTSLDm1a06zm.diag
[2026-03-07 19:27:12] -rw-r--r--. 1 boinc boinc     21706 Mar  7 19:27 stderr.txt
[2026-03-07 19:27:12] HITS file was successfully produced:
[2026-03-07 19:27:12] -rw-------. 1 boinc boinc 184939034 Mar  7 19:25 shared/HITS.pool.root.1
[2026-03-07 19:27:12]  *** Contents of shared directory: ***
[2026-03-07 19:27:12] total 443139
[2026-03-07 19:27:12] -rw-r--r--. 2 boinc boinc 267884779 Mar  7 17:53 ATLAS.root_0
[2026-03-07 19:27:12] -rw-r--r--. 2 boinc boinc     15845 Mar  7 17:53 start_atlas.sh
[2026-03-07 19:27:12] -rw-r--r--. 2 boinc boinc    597929 Mar  7 17:53 input.tar.gz
[2026-03-07 19:27:12] -rw-------. 1 boinc boinc 184939034 Mar  7 19:25 HITS.pool.root.1
[2026-03-07 19:27:12] -rw-------. 1 boinc boinc   1085440 Mar  7 19:27 result.tar.gz
19:27:13 (280730): run_atlas exited; CPU time 20976.676282
19:27:13 (280730): called boinc_finish(0)

</stderr_txt>
]]>

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