Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
13:36:44 (695402): wrapper (7.7.26015): starting
13:36:44 (695402): wrapper: running run_atlas (--nthreads 4)
[2026-03-09 13:36:44] Arguments: --nthreads 4
[2026-03-09 13:36:44] Threads: 4
[2026-03-09 13:36:44] Checking for CVMFS
[2026-03-09 13:36:44] No cvmfs_config command found, will try listing directly
[2026-03-09 13:36:44] CVMFS is ok
[2026-03-09 13:36:44] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-09 13:36:44] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-09 13:36:44] Further information can be found at the LHC@home message board.
[2026-03-09 13:36:44] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-09 13:36:44] Checking for apptainer binary...
[2026-03-09 13:36:44] which: no apptainer in ((null))
[2026-03-09 13:36:44] apptainer is not installed, using version from CVMFS
[2026-03-09 13:36:44] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-09 13:36:45] WARNING: Environment variable TMPDIR already has value [/var/lib/boinc/var/slot20/slots/1/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut04.grid.cesnet.cz
[2026-03-09 13:36:45] apptainer works
[2026-03-09 13:36:45] Set ATHENA_PROC_NUMBER=4
[2026-03-09 13:36:45] Set ATHENA_CORE_NUMBER=4
[2026-03-09 13:36:45] Starting ATLAS job with PandaID=7044774402
[2026-03-09 13:36:45] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc/var/slot20/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-09 21:44:11]  *** The last 200 lines of the pilot log: ***
[2026-03-09 21:44:11] 2026-03-09 20:43:04,768 | INFO     | total number of processed events: 400 (read)
[2026-03-09 21:44:11] 2026-03-09 20:43:04,787 | INFO     | using path: /var/lib/boinc/var/slot20/slots/1/PanDA_Pilot-7044774402/memory_monitor_summary.json (trf name=prmon)
[2026-03-09 21:44:11] 2026-03-09 20:43:04,788 | INFO     | extracted standard info from prmon json
[2026-03-09 21:44:11] 2026-03-09 20:43:04,788 | INFO     | extracted standard memory fields from prmon json
[2026-03-09 21:44:11] 2026-03-09 20:43:04,788 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-03-09 21:44:11] 2026-03-09 20:43:04,789 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-03-09 21:44:11] 2026-03-09 20:43:04,789 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-03-09 21:44:11] 2026-03-09 20:43:04,798 | INFO     | fitting pss+swap vs Time
[2026-03-09 21:44:11] 2026-03-09 20:43:04,799 | INFO     | sum of square deviations: 33865694979.49169
[2026-03-09 21:44:11] 2026-03-09 20:43:04,804 | INFO     | sum of deviations: 91138691874.18398
[2026-03-09 21:44:11] 2026-03-09 20:43:04,804 | INFO     | mean x: 1773074410.504184
[2026-03-09 21:44:11] 2026-03-09 20:43:04,804 | INFO     | mean y: 2333126.907949791
[2026-03-09 21:44:11] 2026-03-09 20:43:04,804 | INFO     | intersect: -4769329833.701598
[2026-03-09 21:44:11] 2026-03-09 20:43:04,805 | INFO     | chi2: 2.2683475312400994
[2026-03-09 21:44:11] 2026-03-09 20:43:04,806 | INFO     | sum of square deviations: 32814038661.991543
[2026-03-09 21:44:11] 2026-03-09 20:43:04,811 | INFO     | sum of deviations: 120149432219.01901
[2026-03-09 21:44:11] 2026-03-09 20:43:04,811 | INFO     | mean x: 1773074258.0042284
[2026-03-09 21:44:11] 2026-03-09 20:43:04,811 | INFO     | mean y: 2337296.4904862577
[2026-03-09 21:44:11] 2026-03-09 20:43:04,812 | INFO     | intersect: -6489818928.952232
[2026-03-09 21:44:11] 2026-03-09 20:43:04,812 | INFO     | chi2: 1.4696788495692295
[2026-03-09 21:44:11] 2026-03-09 20:43:04,812 | INFO     | current chi2=1.4696788495692295 (change=35.20927330012081 %)
[2026-03-09 21:44:11] 2026-03-09 20:43:04,813 | INFO     | sum of square deviations: 31784382756.991516
[2026-03-09 21:44:11] 2026-03-09 20:43:04,820 | INFO     | sum of deviations: 118417840798.9573
[2026-03-09 21:44:11] 2026-03-09 20:43:04,820 | INFO     | mean x: 1773074105.5042734
[2026-03-09 21:44:11] 2026-03-09 20:43:04,820 | INFO     | mean y: 2337040.0213675215
[2026-03-09 21:44:11] 2026-03-09 20:43:04,820 | INFO     | intersect: -6603536314.690032
[2026-03-09 21:44:11] 2026-03-09 20:43:04,821 | INFO     | chi2: 1.4696399395473647
[2026-03-09 21:44:11] 2026-03-09 20:43:04,821 | INFO     | current chi2=1.4696399395473647 (change=0.0026475186654649134 %)
[2026-03-09 21:44:11] 2026-03-09 20:43:04,821 | INFO     | right removable region: 467
[2026-03-09 21:44:11] 2026-03-09 20:43:04,822 | INFO     | sum of square deviations: 32814037441.991543
[2026-03-09 21:44:11] 2026-03-09 20:43:04,827 | INFO     | sum of deviations: 22182510962.50107
[2026-03-09 21:44:11] 2026-03-09 20:43:04,828 | INFO     | mean x: 1773074563.0042284
[2026-03-09 21:44:11] 2026-03-09 20:43:04,828 | INFO     | mean y: 2343078.2494714586
[2026-03-09 21:44:11] 2026-03-09 20:43:04,828 | INFO     | intersect: -1196267303.0759788
[2026-03-09 21:44:11] 2026-03-09 20:43:04,829 | INFO     | chi2: 0.843982083605945
[2026-03-09 21:44:11] 2026-03-09 20:43:04,829 | INFO     | current chi2=0.843982083605945 (change=62.79308739148352 %)
[2026-03-09 21:44:11] 2026-03-09 20:43:04,829 | INFO     | sum of square deviations: 31784380316.991516
[2026-03-09 21:44:11] 2026-03-09 20:43:04,837 | INFO     | sum of deviations: 9343309322.923088
[2026-03-09 21:44:11] 2026-03-09 20:43:04,837 | INFO     | mean x: 1773074715.5042734
[2026-03-09 21:44:11] 2026-03-09 20:43:04,837 | INFO     | mean y: 2344981.5384615385
[2026-03-09 21:44:11] 2026-03-09 20:43:04,837 | INFO     | intersect: -518866549.23201895
[2026-03-09 21:44:11] 2026-03-09 20:43:04,838 | INFO     | chi2: 0.8183580106544616
[2026-03-09 21:44:11] 2026-03-09 20:43:04,838 | INFO     | current chi2=0.8183580106544616 (change=3.0360920509122162 %)
[2026-03-09 21:44:11] 2026-03-09 20:43:04,838 | INFO     | left removable region: 20
[2026-03-09 21:44:11] 2026-03-09 20:43:04,839 | INFO     | sum of square deviations: 27694819109.99087
[2026-03-09 21:44:11] 2026-03-09 20:43:04,843 | INFO     | sum of deviations: 28257487058.5839
[2026-03-09 21:44:11] 2026-03-09 20:43:04,843 | INFO     | mean x: 1773074685.0044742
[2026-03-09 21:44:11] 2026-03-09 20:43:04,843 | INFO     | mean y: 2350701.2080536913
[2026-03-09 21:44:11] 2026-03-09 20:43:04,844 | INFO     | intersect: -1806747049.7623508
[2026-03-09 21:44:11] 2026-03-09 20:43:04,844 | INFO     | chi2: 0.002562645746213112
[2026-03-09 21:44:11] 2026-03-09 20:43:04,845 | INFO     | current memory leak: 1.02 B/s (using 447 data points, chi2=0.00)
[2026-03-09 21:44:11] 2026-03-09 20:43:04,846 | INFO     | could have reported an average CPU frequency of 2471 MHz (20 samples)
[2026-03-09 21:44:11] 2026-03-09 20:43:04,846 | INFO     | ..............................
[2026-03-09 21:44:11] 2026-03-09 20:43:04,846 | INFO     | . Timing measurements:
[2026-03-09 21:44:11] 2026-03-09 20:43:04,847 | INFO     | . get job = 0 s
[2026-03-09 21:44:11] 2026-03-09 20:43:04,847 | INFO     | . initial setup = 11 s
[2026-03-09 21:44:11] 2026-03-09 20:43:04,847 | INFO     | . payload setup = 11 s
[2026-03-09 21:44:11] 2026-03-09 20:43:04,847 | INFO     | . stage-in = 0 s
[2026-03-09 21:44:11] 2026-03-09 20:43:04,847 | INFO     | . payload execution = 29124 s
[2026-03-09 21:44:11] 2026-03-09 20:43:04,847 | INFO     | . stage-out = 1 s
[2026-03-09 21:44:11] 2026-03-09 20:43:04,847 | INFO     | . log creation = 0 s
[2026-03-09 21:44:11] 2026-03-09 20:43:04,847 | INFO     | ..............................
[2026-03-09 21:44:11] 2026-03-09 20:43:04,944 | INFO     | 
[2026-03-09 21:44:11] 2026-03-09 20:43:04,945 | INFO     | job summary report
[2026-03-09 21:44:11] 2026-03-09 20:43:04,945 | INFO     | --------------------------------------------------
[2026-03-09 21:44:11] 2026-03-09 20:43:04,945 | INFO     | PanDA job id: 7044774402
[2026-03-09 21:44:11] 2026-03-09 20:43:04,945 | INFO     | task id: 48966951
[2026-03-09 21:44:11] 2026-03-09 20:43:04,945 | INFO     | errors: (none)
[2026-03-09 21:44:11] 2026-03-09 20:43:04,945 | INFO     | status: LOG_TRANSFER = DONE 
[2026-03-09 21:44:11] 2026-03-09 20:43:04,945 | INFO     | pilot state: finished 
[2026-03-09 21:44:11] 2026-03-09 20:43:04,945 | INFO     | transexitcode: 0
[2026-03-09 21:44:11] 2026-03-09 20:43:04,946 | INFO     | exeerrorcode: 0
[2026-03-09 21:44:11] 2026-03-09 20:43:04,946 | INFO     | exeerrordiag: 
[2026-03-09 21:44:11] 2026-03-09 20:43:04,946 | INFO     | exitcode: 0
[2026-03-09 21:44:11] 2026-03-09 20:43:04,946 | INFO     | exitmsg: OK
[2026-03-09 21:44:11] 2026-03-09 20:43:04,946 | INFO     | cpuconsumptiontime: 104498 s
[2026-03-09 21:44:11] 2026-03-09 20:43:04,947 | INFO     | nevents: 400
[2026-03-09 21:44:11] 2026-03-09 20:43:04,947 | INFO     | neventsw: 0
[2026-03-09 21:44:11] 2026-03-09 20:43:04,947 | INFO     | pid: 704350
[2026-03-09 21:44:11] 2026-03-09 20:43:04,947 | INFO     | pgrp: 704350
[2026-03-09 21:44:11] 2026-03-09 20:43:04,947 | INFO     | corecount: 4
[2026-03-09 21:44:11] 2026-03-09 20:43:04,947 | INFO     | event service: False
[2026-03-09 21:44:11] 2026-03-09 20:43:04,947 | INFO     | sizes: {0: 2279785, 1: 2280246, 29139: 2318882, 29142: 2327902, 29144: 2327958, 29147: 2328152}
[2026-03-09 21:44:11] 2026-03-09 20:43:04,948 | INFO     | --------------------------------------------------
[2026-03-09 21:44:11] 2026-03-09 20:43:04,948 | INFO     | 
[2026-03-09 21:44:11] 2026-03-09 20:43:04,948 | INFO     | executing command: ls -lF /var/lib/boinc/var/slot20/slots/1
[2026-03-09 21:44:11] 2026-03-09 20:43:04,973 | INFO     | queue jobs had 0 job(s) [purged]
[2026-03-09 21:44:11] 2026-03-09 20:43:04,974 | INFO     | queue payloads had 0 job(s) [purged]
[2026-03-09 21:44:11] 2026-03-09 20:43:04,974 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-09 21:44:11] 2026-03-09 20:43:04,974 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-09 21:44:11] 2026-03-09 20:43:04,974 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-09 21:44:11] 2026-03-09 20:43:04,974 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-09 21:44:11] 2026-03-09 20:43:04,975 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-09 21:44:11] 2026-03-09 20:43:04,975 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-09 21:44:11] 2026-03-09 20:43:04,975 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-09 21:44:11] 2026-03-09 20:43:04,975 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-09 21:44:11] 2026-03-09 20:43:04,975 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-09 21:44:11] 2026-03-09 20:43:04,975 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-09 21:44:11] 2026-03-09 20:43:04,975 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-09 21:44:11] 2026-03-09 20:43:04,975 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-09 21:44:11] 2026-03-09 20:43:04,975 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-09 21:44:11] 2026-03-09 20:43:04,975 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-09 21:44:11] 2026-03-09 20:43:04,975 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-09 21:44:11] 2026-03-09 20:43:04,976 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-09 21:44:11] 2026-03-09 20:43:04,976 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-09 21:44:11] 2026-03-09 20:43:04,976 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-09 21:44:11] 2026-03-09 20:43:04,976 | INFO     | job 7044774402 has completed (purged errors)
[2026-03-09 21:44:11] 2026-03-09 20:43:04,976 | INFO     | overall cleanup function is called
[2026-03-09 21:44:11] 2026-03-09 20:43:05,290 | INFO     | PID=699566 has CPU usage=12.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-03-09 21:44:11] 2026-03-09 20:43:05,290 | INFO     | .. there are 15 such processes running
[2026-03-09 21:44:11] 2026-03-09 20:43:05,986 | INFO     | --- collectZombieJob: --- 10, [704350]
[2026-03-09 21:44:11] 2026-03-09 20:43:05,986 | INFO     | zombie collector waiting for pid 704350
[2026-03-09 21:44:11] 2026-03-09 20:43:05,986 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-09 21:44:11] 2026-03-09 20:43:05,986 | INFO     | collected zombie processes
[2026-03-09 21:44:11] 2026-03-09 20:43:05,986 | INFO     | will attempt to kill all subprocesses of pid=704350
[2026-03-09 21:44:11] 2026-03-09 20:43:06,361 | INFO     | process IDs to be killed: [704350] (in reverse order)
[2026-03-09 21:44:11] 2026-03-09 20:43:06,515 | WARNING  | found no corresponding commands to process id(s)
[2026-03-09 21:44:11] 2026-03-09 20:43:06,516 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-09 21:44:11] 2026-03-09 20:43:06,528 | INFO     | did not find any defunct processes belonging to 704350
[2026-03-09 21:44:11] 2026-03-09 20:43:06,539 | INFO     | did not find any defunct processes belonging to 704350
[2026-03-09 21:44:11] 2026-03-09 20:43:06,539 | INFO     | ready for new job
[2026-03-09 21:44:11] 2026-03-09 20:43:06,540 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-09 21:44:11] 2026-03-09 20:43:06,543 | INFO     | **************************************
[2026-03-09 21:44:11] 2026-03-09 20:43:06,543 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-03-09 21:44:11] 2026-03-09 20:43:06,543 | INFO     | **************************************
[2026-03-09 21:44:11] 2026-03-09 20:43:06,543 | INFO     | 
[2026-03-09 21:44:11] 2026-03-09 20:43:06,547 | INFO     | architecture information:
[2026-03-09 21:44:11] 2026-03-09 20:43:06,547 | INFO     | executing command: cat /etc/os-release
[2026-03-09 21:44:11] 2026-03-09 20:43:06,569 | INFO     | cat /etc/os-release:
[2026-03-09 21:44:11] NAME="CentOS Linux"
[2026-03-09 21:44:11] VERSION="7 (Core)"
[2026-03-09 21:44:11] ID="centos"
[2026-03-09 21:44:11] ID_LIKE="rhel fedora"
[2026-03-09 21:44:11] VERSION_ID="7"
[2026-03-09 21:44:11] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-09 21:44:11] ANSI_COLOR="0;31"
[2026-03-09 21:44:11] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-09 21:44:11] HOME_URL="https://www.centos.org/"
[2026-03-09 21:44:11] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-09 21:44:11] 
[2026-03-09 21:44:11] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-09 21:44:11] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-09 21:44:11] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-09 21:44:11] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-09 21:44:11] 
[2026-03-09 21:44:11] 2026-03-09 20:43:06,570 | INFO     | **************************************
[2026-03-09 21:44:11] 2026-03-09 20:43:07,073 | INFO     | executing command: df -mP /var/lib/boinc/var/slot20/slots/1
[2026-03-09 21:44:11] 2026-03-09 20:43:07,093 | INFO     | sufficient remaining disk space (20605566976 B)
[2026-03-09 21:44:11] 2026-03-09 20:43:07,093 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-09 21:44:11] 2026-03-09 20:43:07,093 | INFO     | current server update state: UPDATING_FINAL
[2026-03-09 21:44:11] 2026-03-09 20:43:07,094 | INFO     | update_server=False
[2026-03-09 21:44:11] 2026-03-09 20:43:07,094 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-09 21:44:11] 2026-03-09 20:43:07,094 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-09 21:44:11] 2026-03-09 20:43:07,094 | INFO     | aborting loop
[2026-03-09 21:44:11] 2026-03-09 20:43:07,132 | INFO     | all data control threads have been joined
[2026-03-09 21:44:11] 2026-03-09 20:43:07,684 | INFO     | all payload control threads have been joined
[2026-03-09 21:44:11] 2026-03-09 20:43:08,072 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-09 21:44:11] 2026-03-09 20:43:08,100 | INFO     | [job] retrieve thread has finished
[2026-03-09 21:44:11] 2026-03-09 20:43:08,101 | INFO     | [job] job monitor thread has finished
[2026-03-09 21:44:11] 2026-03-09 20:43:08,128 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-09 21:44:11] 2026-03-09 20:43:08,137 | INFO     | [data] control thread has finished
[2026-03-09 21:44:11] 2026-03-09 20:43:08,248 | INFO     | all job control threads have been joined
[2026-03-09 21:44:11] 2026-03-09 20:43:08,324 | INFO     | [payload] failed_post thread has finished
[2026-03-09 21:44:11] 2026-03-09 20:43:08,578 | INFO     | [payload] validate_pre thread has finished
[2026-03-09 21:44:11] 2026-03-09 20:43:08,658 | INFO     | [data] copytool_in thread has finished
[2026-03-09 21:44:11] 2026-03-09 20:43:08,689 | INFO     | [payload] control thread has finished
[2026-03-09 21:44:11] 2026-03-09 20:43:08,706 | INFO     | [payload] execute_payloads thread has finished
[2026-03-09 21:44:11] 2026-03-09 20:43:09,253 | INFO     | [job] control thread has finished
[2026-03-09 21:44:11] 2026-03-09 20:43:09,384 | INFO     | [job] validate thread has finished
[2026-03-09 21:44:11] 2026-03-09 20:43:09,384 | INFO     | [job] create_data_payload thread has finished
[2026-03-09 21:44:11] 2026-03-09 20:43:09,523 | INFO     | [payload] validate_post thread has finished
[2026-03-09 21:44:11] 2026-03-09 20:43:09,954 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-09 21:44:11] 2026-03-09 20:43:10,133 | INFO     | [data] copytool_out thread has finished
[2026-03-09 21:44:11] 2026-03-09 20:43:10,959 | INFO     | [job] queue monitor thread has finished
[2026-03-09 21:44:11] 2026-03-09 20:43:12,077 | INFO     | [data] queue_monitor thread has finished
[2026-03-09 21:44:11] 2026-03-09 20:43:17,372 | INFO     | job.realtimelogging is not enabled
[2026-03-09 21:44:11] 2026-03-09 20:43:18,377 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-09 21:44:11] 2026-03-09 20:43:37,828 | INFO     | PID=699566 has CPU usage=2.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-03-09 21:44:11] 2026-03-09 20:43:37,828 | INFO     | .. there are 15 such processes running
[2026-03-09 21:44:11] 2026-03-09 20:43:37,829 | INFO     | found 0 job(s) in 20 queues
[2026-03-09 21:44:11] 2026-03-09 20:43:37,829 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-09 21:44:11] 2026-03-09 20:43:37,829 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-09 21:44:11] 2026-03-09 20:44:05,564 | INFO     | [monitor] cgroup control has ended
[2026-03-09 21:44:11] 2026-03-09 20:44:06,426 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23306669049664)>', '<ExcThread(monitor, started 23306363188992)>']
[2026-03-09 21:44:11] 2026-03-09 20:44:06,974 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-09 21:44:11] 2026-03-09 20:44:06,974 | INFO     | [monitor] control thread has ended
[2026-03-09 21:44:11] 2026-03-09 20:44:11,451 | INFO     | all workflow threads have been joined
[2026-03-09 21:44:11] 2026-03-09 20:44:11,451 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-09 21:44:11] 2026-03-09 20:44:11,451 | INFO     | traces error code: 0
[2026-03-09 21:44:11] 2026-03-09 20:44:11,451 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-09 21:44:11] 2026-03-09 20:44:11,596 [wrapper] ==== pilot stdout END ====
[2026-03-09 21:44:11] 2026-03-09 20:44:11,599 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-09 21:44:11] 2026-03-09 20:44:11,602 [wrapper] pilotpid: 699566
[2026-03-09 21:44:11] 2026-03-09 20:44:11,605 [wrapper] Pilot exit status: 0
[2026-03-09 21:44:11] 2026-03-09 20:44:11,618 [wrapper] pandaids: 7044774402
[2026-03-09 21:44:11] 2026-03-09 20:44:11,692 [wrapper] cleanup supervisor_pilot 1374715 699567
[2026-03-09 21:44:11] 2026-03-09 20:44:11,696 [wrapper] Test setup, not cleaning
[2026-03-09 21:44:11] 2026-03-09 20:44:11,699 [wrapper] apfmon messages muted
[2026-03-09 21:44:11] 2026-03-09 20:44:11,702 [wrapper] ==== wrapper stdout END ====
[2026-03-09 21:44:11] 2026-03-09 20:44:11,705 [wrapper] ==== wrapper stderr END ====
[2026-03-09 21:44:11]  *** Error codes and diagnostics ***
[2026-03-09 21:44:11]     "exeErrorCode": 0,
[2026-03-09 21:44:11]     "exeErrorDiag": "",
[2026-03-09 21:44:11]     "pilotErrorCode": 0,
[2026-03-09 21:44:11]     "pilotErrorDiag": "",
[2026-03-09 21:44:11]  *** Listing of results directory ***
[2026-03-09 21:44:11] total 518276
[2026-03-09 21:44:11] -rw-r--r--. 1 boinc boinc    584627 Mar  7 09:32 pilot3.tar.gz
[2026-03-09 21:44:11] -rw-r--r--. 1 boinc boinc      5111 Mar  7 09:33 queuedata.json
[2026-03-09 21:44:11] -rwx------. 1 boinc boinc     36322 Mar  7 09:33 runpilot2-wrapper.sh
[2026-03-09 21:44:11] -rw-r--r--. 1 boinc boinc       100 Mar  9 13:36 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-09 21:44:11] -rwxr-xr-x. 1 boinc boinc      7986 Mar  9 13:36 run_atlas
[2026-03-09 21:44:11] -rw-r--r--. 1 boinc boinc       105 Mar  9 13:36 job.xml
[2026-03-09 21:44:11] -rw-r--r--. 2 boinc boinc 237126630 Mar  9 13:36 EVNT.48966948._000068.pool.root.1
[2026-03-09 21:44:11] -rw-r--r--. 1 boinc boinc      6563 Mar  9 13:36 init_data.xml
[2026-03-09 21:44:11] -rw-r--r--. 2 boinc boinc     15845 Mar  9 13:36 start_atlas.sh
[2026-03-09 21:44:11] drwxrwx--x. 2 boinc boinc      4096 Mar  9 13:36 shared
[2026-03-09 21:44:11] -rw-r--r--. 2 boinc boinc    597936 Mar  9 13:36 input.tar.gz
[2026-03-09 21:44:11] -rw-r--r--. 1 boinc boinc         0 Mar  9 13:36 boinc_lockfile
[2026-03-09 21:44:11] -rw-r--r--. 1 boinc boinc      2541 Mar  9 13:36 pandaJob.out
[2026-03-09 21:44:11] -rw-------. 1 boinc boinc    990710 Mar  9 13:37 agis_schedconf.cvmfs.json
[2026-03-09 21:44:11] -rw-------. 1 boinc boinc       447 Mar  9 13:37 workernode_map.json
[2026-03-09 21:44:11] drwx------. 5 boinc boinc      4096 Mar  9 13:37 pilot3
[2026-03-09 21:44:11] -rw-------. 1 boinc boinc 280294176 Mar  9 21:42 HITS.48966951._001677.pool.root.1
[2026-03-09 21:44:11] -rw-r--r--. 1 boinc boinc       531 Mar  9 21:42 boinc_task_state.xml
[2026-03-09 21:44:11] -rw-------. 1 boinc boinc      1035 Mar  9 21:42 memory_monitor_summary.json
[2026-03-09 21:44:11] -rw-------. 1 boinc boinc   1511578 Mar  9 21:42 agis_ddmendpoints.agis.ALL.json
[2026-03-09 21:44:11] -rw-------. 1 boinc boinc    627383 Mar  9 21:42 log.48966951._001677.job.log.tgz.1
[2026-03-09 21:44:11] -rw-------. 1 boinc boinc      6403 Mar  9 21:43 heartbeat.json
[2026-03-09 21:44:11] -rw-------. 1 boinc boinc        95 Mar  9 21:43 pilot_heartbeat.json
[2026-03-09 21:44:11] -rw-r--r--. 1 boinc boinc      8192 Mar  9 21:43 boinc_mmap_file
[2026-03-09 21:44:11] -rw-r--r--. 1 boinc boinc        29 Mar  9 21:43 wrapper_checkpoint.txt
[2026-03-09 21:44:11] -rw-------. 1 boinc boinc      4900 Mar  9 21:44 pilotlog.txt
[2026-03-09 21:44:11] -rw-------. 1 boinc boinc   4056169 Mar  9 21:44 log.48966951._001677.job.log.1
[2026-03-09 21:44:11] -rw-------. 1 boinc boinc       357 Mar  9 21:44 output.list
[2026-03-09 21:44:11] -rw-r--r--. 1 boinc boinc       620 Mar  9 21:44 runtime_log
[2026-03-09 21:44:11] -rw-------. 1 boinc boinc   4700160 Mar  9 21:44 result.tar.gz
[2026-03-09 21:44:11] -rw-r--r--. 1 boinc boinc      9205 Mar  9 21:44 runtime_log.err
[2026-03-09 21:44:11] -rw-------. 1 boinc boinc       667 Mar  9 21:44 1u9KDm8G2I9nsSi4ap6QjLDmwznN0nGgGQJmIVkRDmNEVLDmsxvOFo.diag
[2026-03-09 21:44:11] -rw-r--r--. 1 boinc boinc     20978 Mar  9 21:44 stderr.txt
[2026-03-09 21:44:11] HITS file was successfully produced:
[2026-03-09 21:44:11] -rw-------. 1 boinc boinc 280294176 Mar  9 21:42 shared/HITS.pool.root.1
[2026-03-09 21:44:11]  *** Contents of shared directory: ***
[2026-03-09 21:44:11] total 510500
[2026-03-09 21:44:11] -rw-r--r--. 2 boinc boinc 237126630 Mar  9 13:36 ATLAS.root_0
[2026-03-09 21:44:11] -rw-r--r--. 2 boinc boinc     15845 Mar  9 13:36 start_atlas.sh
[2026-03-09 21:44:11] -rw-r--r--. 2 boinc boinc    597936 Mar  9 13:36 input.tar.gz
[2026-03-09 21:44:11] -rw-------. 1 boinc boinc 280294176 Mar  9 21:42 HITS.pool.root.1
[2026-03-09 21:44:11] -rw-------. 1 boinc boinc   4700160 Mar  9 21:44 result.tar.gz
21:44:13 (695402): run_atlas exited; CPU time 105819.040617
21:44:13 (695402): called boinc_finish(0)

</stderr_txt>
]]>

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