Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
20:51:49 (1367552): wrapper (7.7.26015): starting
20:51:49 (1367552): wrapper: running run_atlas (--nthreads 4)
[2026-03-07 20:51:49] Arguments: --nthreads 4
[2026-03-07 20:51:49] Threads: 4
[2026-03-07 20:51:49] Checking for CVMFS
[2026-03-07 20:51:50] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-07 20:51:50] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-07 20:51:50] Running cvmfs_config stat atlas.cern.ch
[2026-03-07 20:51:50] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-07 20:51:50] 2.9.2.0 3731 8346 98936 157012 1 50 29466707 36864000 0 130560 0 3679402 99.984 302022 4832 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-03-07 20:51:50] CVMFS is ok
[2026-03-07 20:51:50] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-07 20:51:50] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-07 20:51:50] Further information can be found at the LHC@home message board.
[2026-03-07 20:51:50] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-07 20:51:50] Checking for apptainer binary...
[2026-03-07 20:51:50] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-07 20:51:50] Running /usr/bin/apptainer --version
[2026-03-07 20:51:50] apptainer version 1.4.1-1.1
[2026-03-07 20:51:50] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-07 20:51:50] belleA253c
[2026-03-07 20:51:50] apptainer works
[2026-03-07 20:51:50] Set ATHENA_PROC_NUMBER=4
[2026-03-07 20:51:50] Set ATHENA_CORE_NUMBER=4
[2026-03-07 20:51:50] Starting ATLAS job with PandaID=7038499051
[2026-03-07 20:51:50] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-07 21:59:13]  *** The last 200 lines of the pilot log: ***
[2026-03-07 21:59:13] 2026-03-07 20:58:40,986 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-07 21:59:13] 2026-03-07 20:58:40,986 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-07 21:59:13] 2026-03-07 20:58:40,986 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-07 21:59:13] 2026-03-07 20:58:40,986 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-07 21:59:13] 2026-03-07 20:58:40,986 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-07 21:59:13] 2026-03-07 20:58:40,986 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-07 21:59:13] 2026-03-07 20:58:40,986 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-07 21:59:13] 2026-03-07 20:58:40,986 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-07 21:59:13] 2026-03-07 20:58:40,986 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-07 21:59:13] 2026-03-07 20:58:40,986 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-07 21:59:13] 2026-03-07 20:58:40,986 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-07 21:59:13] 2026-03-07 20:58:40,986 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-07 21:59:13] 2026-03-07 20:58:40,986 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-07 21:59:13] 2026-03-07 20:58:40,986 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-07 21:59:13] 2026-03-07 20:58:40,986 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-07 21:59:13] 2026-03-07 20:58:40,986 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-07 21:59:13] 2026-03-07 20:58:40,986 | INFO     | job 7038499051 has completed (purged errors)
[2026-03-07 21:59:13] 2026-03-07 20:58:40,986 | INFO     | overall cleanup function is called
[2026-03-07 21:59:13] 2026-03-07 20:58:41,993 | INFO     | --- collectZombieJob: --- 10, [1376182]
[2026-03-07 21:59:13] 2026-03-07 20:58:41,994 | INFO     | zombie collector waiting for pid 1376182
[2026-03-07 21:59:13] 2026-03-07 20:58:41,994 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-07 21:59:13] 2026-03-07 20:58:41,994 | INFO     | collected zombie processes
[2026-03-07 21:59:13] 2026-03-07 20:58:41,994 | INFO     | will attempt to kill all subprocesses of pid=1376182
[2026-03-07 21:59:13] 2026-03-07 20:58:42,048 | INFO     | process IDs to be killed: [1376182] (in reverse order)
[2026-03-07 21:59:13] 2026-03-07 20:58:42,086 | WARNING  | found no corresponding commands to process id(s)
[2026-03-07 21:59:13] 2026-03-07 20:58:42,087 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-07 21:59:13] 2026-03-07 20:58:42,089 | INFO     | did not find any defunct processes belonging to 1376182
[2026-03-07 21:59:13] 2026-03-07 20:58:42,090 | INFO     | did not find any defunct processes belonging to 1376182
[2026-03-07 21:59:13] 2026-03-07 20:58:42,090 | INFO     | ready for new job
[2026-03-07 21:59:13] 2026-03-07 20:58:42,090 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-07 21:59:13] 2026-03-07 20:58:42,091 | INFO     | **************************************
[2026-03-07 21:59:13] 2026-03-07 20:58:42,091 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-03-07 21:59:13] 2026-03-07 20:58:42,091 | INFO     | **************************************
[2026-03-07 21:59:13] 2026-03-07 20:58:42,091 | INFO     | 
[2026-03-07 21:59:13] 2026-03-07 20:58:42,092 | INFO     | architecture information:
[2026-03-07 21:59:13] 2026-03-07 20:58:42,092 | INFO     | executing command: cat /etc/os-release
[2026-03-07 21:59:13] 2026-03-07 20:58:42,108 | INFO     | cat /etc/os-release:
[2026-03-07 21:59:13] NAME="CentOS Linux"
[2026-03-07 21:59:13] VERSION="7 (Core)"
[2026-03-07 21:59:13] ID="centos"
[2026-03-07 21:59:13] ID_LIKE="rhel fedora"
[2026-03-07 21:59:13] VERSION_ID="7"
[2026-03-07 21:59:13] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-07 21:59:13] ANSI_COLOR="0;31"
[2026-03-07 21:59:13] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-07 21:59:13] HOME_URL="https://www.centos.org/"
[2026-03-07 21:59:13] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-07 21:59:13] 
[2026-03-07 21:59:13] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-07 21:59:13] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-07 21:59:13] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-07 21:59:13] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-07 21:59:13] 
[2026-03-07 21:59:13] 2026-03-07 20:58:42,108 | INFO     | **************************************
[2026-03-07 21:59:13] 2026-03-07 20:58:42,612 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-03-07 21:59:13] 2026-03-07 20:58:42,631 | INFO     | sufficient remaining disk space (328472723456 B)
[2026-03-07 21:59:13] 2026-03-07 20:58:42,631 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-07 21:59:13] 2026-03-07 20:58:42,632 | INFO     | current server update state: UPDATING_FINAL
[2026-03-07 21:59:13] 2026-03-07 20:58:42,632 | INFO     | update_server=False
[2026-03-07 21:59:13] 2026-03-07 20:58:42,632 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-07 21:59:13] 2026-03-07 20:58:42,632 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-07 21:59:13] 2026-03-07 20:58:42,729 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-07 21:59:13] 2026-03-07 20:58:43,048 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-03-07 21:59:13] 2026-03-07 20:58:43,049 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-03-07 21:59:13] 2026-03-07 20:58:43,049 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-07 21:59:13] 2026-03-07 20:58:43,049 | INFO     | will abort loop
[2026-03-07 21:59:13] 2026-03-07 20:58:43,523 | INFO     | all data control threads have been joined
[2026-03-07 21:59:13] 2026-03-07 20:58:43,637 | INFO     | [job] queue monitor thread has finished
[2026-03-07 21:59:13] 2026-03-07 20:58:43,638 | INFO     | [job] retrieve thread has finished
[2026-03-07 21:59:13] 2026-03-07 20:58:43,677 | INFO     | [job] create_data_payload thread has finished
[2026-03-07 21:59:13] 2026-03-07 20:58:43,826 | INFO     | [payload] validate_pre thread has finished
[2026-03-07 21:59:13] 2026-03-07 20:58:43,876 | INFO     | [data] copytool_in thread has finished
[2026-03-07 21:59:13] 2026-03-07 20:58:43,910 | INFO     | all job control threads have been joined
[2026-03-07 21:59:13] 2026-03-07 20:58:43,915 | INFO     | all payload control threads have been joined
[2026-03-07 21:59:13] 2026-03-07 20:58:44,054 | INFO     | [job] job monitor thread has finished
[2026-03-07 21:59:13] 2026-03-07 20:58:44,080 | INFO     | [payload] execute_payloads thread has finished
[2026-03-07 21:59:13] 2026-03-07 20:58:44,457 | INFO     | [payload] failed_post thread has finished
[2026-03-07 21:59:13] 2026-03-07 20:58:44,529 | INFO     | [data] control thread has finished
[2026-03-07 21:59:13] 2026-03-07 20:58:44,736 | INFO     | [data] copytool_out thread has finished
[2026-03-07 21:59:13] 2026-03-07 20:58:44,859 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-07 21:59:13] 2026-03-07 20:58:44,888 | INFO     | [payload] validate_post thread has finished
[2026-03-07 21:59:13] 2026-03-07 20:58:44,916 | INFO     | [job] control thread has finished
[2026-03-07 21:59:13] 2026-03-07 20:58:44,920 | INFO     | [payload] control thread has finished
[2026-03-07 21:59:13] 2026-03-07 20:58:45,070 | INFO     | [job] validate thread has finished
[2026-03-07 21:59:13] 2026-03-07 20:58:46,131 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-07 21:59:13] 2026-03-07 20:58:50,139 | INFO     | [data] queue_monitor thread has finished
[2026-03-07 21:59:13] 2026-03-07 20:59:08,522 | INFO     | [monitor] cgroup control has ended
[2026-03-07 21:59:13] 2026-03-07 20:59:08,684 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140719328421696)>', '<ExcThread(monitor, started 140718513297152)>']
[2026-03-07 21:59:13] 2026-03-07 20:59:13,499 | INFO     | PID=1371666 has CPU usage=2.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-03-07 21:59:13] 2026-03-07 20:59:13,499 | INFO     | found 0 job(s) in 20 queues
[2026-03-07 21:59:13] 2026-03-07 20:59:13,499 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-07 21:59:13] 2026-03-07 20:59:13,500 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-07 21:59:13] 2026-03-07 20:59:13,500 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-07 21:59:13] 2026-03-07 20:59:13,500 | INFO     | [monitor] control thread has ended
[2026-03-07 21:59:13] 2026-03-07 20:59:13,710 | INFO     | all workflow threads have been joined
[2026-03-07 21:59:13] 2026-03-07 20:59:13,710 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-07 21:59:13] 2026-03-07 20:59:13,710 | INFO     | traces error code: 0
[2026-03-07 21:59:13] 2026-03-07 20:59:13,710 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-07 21:59:13] 2026-03-07 20:59:13,793 [wrapper] ==== pilot stdout END ====
[2026-03-07 21:59:13] 2026-03-07 20:59:13,798 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-07 21:59:13] 2026-03-07 20:59:13,802 [wrapper] pilotpid: 1371666
[2026-03-07 21:59:13] 2026-03-07 20:59:13,806 [wrapper] Pilot exit status: 0
[2026-03-07 21:59:13] 2026-03-07 20:59:13,818 [wrapper] pandaids: 7038499051
[2026-03-07 21:59:13] 2026-03-07 20:59:13,843 [wrapper] cleanup supervisor_pilot 1381459 1371667
[2026-03-07 21:59:13] 2026-03-07 20:59:13,847 [wrapper] Test setup, not cleaning
[2026-03-07 21:59:13] 2026-03-07 20:59:13,851 [wrapper] apfmon messages muted
[2026-03-07 21:59:13] 2026-03-07 20:59:13,855 [wrapper] ==== wrapper stdout END ====
[2026-03-07 21:59:13] 2026-03-07 20:59:13,859 [wrapper] ==== wrapper stderr END ====
[2026-03-07 21:59:13]  *** Error codes and diagnostics ***
[2026-03-07 21:59:13]     "exeErrorCode": 0,
[2026-03-07 21:59:13]     "exeErrorDiag": "",
[2026-03-07 21:59:13]     "pilotErrorCode": 0,
[2026-03-07 21:59:13]     "pilotErrorDiag": "",
[2026-03-07 21:59:13]  *** Listing of results directory ***
[2026-03-07 21:59:13] total 616360
[2026-03-07 21:59:13] -rw-r--r-- 1 boinc boinc    584627 Mar  4 14:58 pilot3.tar.gz
[2026-03-07 21:59:13] -rwx------ 1 boinc boinc     36322 Mar  4 14:59 runpilot2-wrapper.sh
[2026-03-07 21:59:13] -rw-r--r-- 1 boinc boinc      5111 Mar  4 15:01 queuedata.json
[2026-03-07 21:59:13] -rw-r--r-- 1 boinc boinc       100 Mar  7 20:51 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-07 21:59:13] -rwxr-xr-x 1 boinc boinc      7986 Mar  7 20:51 run_atlas
[2026-03-07 21:59:13] -rw-r--r-- 1 boinc boinc       105 Mar  7 20:51 job.xml
[2026-03-07 21:59:13] -rw-r--r-- 2 boinc boinc 441486859 Mar  7 20:51 EVNT.46701403._002052.pool.root.1
[2026-03-07 21:59:13] -rw-r--r-- 2 boinc boinc    597954 Mar  7 20:51 input.tar.gz
[2026-03-07 21:59:13] -rw-r--r-- 2 boinc boinc     15845 Mar  7 20:51 start_atlas.sh
[2026-03-07 21:59:13] drwxrwx--x 2 boinc boinc      4096 Mar  7 20:51 shared
[2026-03-07 21:59:13] -rw-r--r-- 1 boinc boinc         0 Mar  7 20:51 boinc_setup_complete
[2026-03-07 21:59:13] -rw-r--r-- 1 boinc boinc      6379 Mar  7 20:51 init_data.xml
[2026-03-07 21:59:13] -rw-r--r-- 1 boinc boinc         0 Mar  7 20:51 boinc_lockfile
[2026-03-07 21:59:13] -rw-r--r-- 1 boinc boinc      2569 Mar  7 20:51 pandaJob.out
[2026-03-07 21:59:13] -rw------- 1 boinc boinc    999177 Mar  7 20:51 agis_schedconf.cvmfs.json
[2026-03-07 21:59:13] -rw------- 1 boinc boinc   1521291 Mar  7 20:51 agis_ddmendpoints.agis.ALL.json
[2026-03-07 21:59:13] -rw------- 1 boinc boinc       431 Mar  7 20:52 workernode_map.json
[2026-03-07 21:59:13] drwx------ 5 boinc boinc      4096 Mar  7 20:52 pilot3
[2026-03-07 21:59:13] -rw------- 1 boinc boinc 183965003 Mar  7 21:58 HITS.48955015._000495.pool.root.1
[2026-03-07 21:59:13] -rw------- 1 boinc boinc        95 Mar  7 21:58 pilot_heartbeat.json
[2026-03-07 21:59:13] -rw-r--r-- 1 boinc boinc       530 Mar  7 21:58 boinc_task_state.xml
[2026-03-07 21:59:13] -rw------- 1 boinc boinc      1038 Mar  7 21:58 memory_monitor_summary.json
[2026-03-07 21:59:13] -rw------- 1 boinc boinc    291365 Mar  7 21:58 log.48955015._000495.job.log.tgz.1
[2026-03-07 21:59:13] -rw------- 1 boinc boinc      6333 Mar  7 21:58 heartbeat.json
[2026-03-07 21:59:13] -rw-r--r-- 1 boinc boinc        27 Mar  7 21:58 wrapper_checkpoint.txt
[2026-03-07 21:59:13] -rw-r--r-- 1 boinc boinc      8192 Mar  7 21:58 boinc_mmap_file
[2026-03-07 21:59:13] -rw------- 1 boinc boinc      4934 Mar  7 21:59 pilotlog.txt
[2026-03-07 21:59:13] -rw------- 1 boinc boinc    596512 Mar  7 21:59 log.48955015._000495.job.log.1
[2026-03-07 21:59:13] -rw------- 1 boinc boinc       357 Mar  7 21:59 output.list
[2026-03-07 21:59:13] -rw-r--r-- 1 boinc boinc       620 Mar  7 21:59 runtime_log
[2026-03-07 21:59:13] -rw------- 1 boinc boinc    901120 Mar  7 21:59 result.tar.gz
[2026-03-07 21:59:13] -rw-r--r-- 1 boinc boinc      8916 Mar  7 21:59 runtime_log.err
[2026-03-07 21:59:13] -rw------- 1 boinc boinc       661 Mar  7 21:59 BQYNDmyv1H9n9Rq4apOajLDm4fhM0noT9bVooX4SDmBeILDmicUgjm.diag
[2026-03-07 21:59:13] -rw-r--r-- 1 boinc boinc     12679 Mar  7 21:59 stderr.txt
[2026-03-07 21:59:13] HITS file was successfully produced:
[2026-03-07 21:59:13] -rw------- 1 boinc boinc 183965003 Mar  7 21:58 shared/HITS.pool.root.1
[2026-03-07 21:59:13]  *** Contents of shared directory: ***
[2026-03-07 21:59:13] total 612284
[2026-03-07 21:59:13] -rw-r--r-- 2 boinc boinc 441486859 Mar  7 20:51 ATLAS.root_0
[2026-03-07 21:59:13] -rw-r--r-- 2 boinc boinc    597954 Mar  7 20:51 input.tar.gz
[2026-03-07 21:59:13] -rw-r--r-- 2 boinc boinc     15845 Mar  7 20:51 start_atlas.sh
[2026-03-07 21:59:13] -rw------- 1 boinc boinc 183965003 Mar  7 21:58 HITS.pool.root.1
[2026-03-07 21:59:13] -rw------- 1 boinc boinc    901120 Mar  7 21:59 result.tar.gz
21:59:14 (1367552): run_atlas exited; CPU time 14953.042846
21:59:14 (1367552): called boinc_finish(0)

</stderr_txt>
]]>

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